Wall clock time and date at job start Tue Mar 31 2020 17:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35922 * 116.99428 * 2 1 4 4 C 1.38848 * 120.40695 * 0.02562 * 3 2 1 5 5 N 1.31886 * 121.00157 * 180.02562 * 4 3 2 6 6 C 1.31687 * 121.93867 * 359.66059 * 5 4 3 7 7 C 1.39530 * 120.68638 * 0.63174 * 6 5 4 8 8 C 1.47862 * 120.52790 * 179.68110 * 7 6 5 9 9 O 1.21541 * 119.99754 * 174.16481 * 8 7 6 10 10 N 1.34784 * 119.99757 * 353.88544 * 8 7 6 11 11 C 1.46500 * 119.99526 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.49677 * 324.99570 * 11 10 8 13 13 C 1.53189 * 109.49853 * 85.06315 * 11 10 8 14 14 N 1.46996 * 108.73642 * 65.34625 * 13 11 10 15 15 C 1.36938 * 120.61530 * 233.61332 * 14 13 11 16 16 H 1.07995 * 120.00525 * 151.12674 * 15 14 13 17 17 C 1.38817 * 119.99359 * 331.12056 * 15 14 13 18 18 N 1.31616 * 120.00399 * 342.97928 * 17 15 14 19 19 Si 1.86801 * 119.99725 * 162.97736 * 17 15 14 20 20 H 1.48503 * 109.47238 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47451 * 120.00331 * 19 17 15 22 22 H 1.48502 * 109.47154 * 240.00476 * 19 17 15 23 23 C 1.46930 * 118.75925 * 53.58572 * 14 13 11 24 24 C 1.53188 * 108.77477 * 306.39418 * 23 14 13 25 25 C 1.53040 * 109.31590 * 54.63315 * 24 23 14 26 26 H 1.09000 * 109.46004 * 58.65032 * 25 24 23 27 27 C 1.52996 * 109.46404 * 178.61156 * 25 24 23 28 28 C 1.38844 * 120.40141 * 180.02562 * 3 2 1 29 29 C 1.50692 * 120.88195 * 0.03756 * 28 3 2 30 30 H 1.09001 * 109.46488 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47501 * 300.00214 * 1 2 3 32 32 H 1.08994 * 109.47190 * 60.00841 * 1 2 3 33 33 H 1.08002 * 119.50409 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.65558 * 180.31429 * 6 5 4 35 35 H 0.96998 * 119.99946 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.58261 * 185.09698 * 13 11 10 37 37 H 1.08991 * 109.58885 * 305.52864 * 13 11 10 38 38 H 0.97001 * 120.00068 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.58610 * 186.60507 * 23 14 13 40 40 H 1.08999 * 109.69886 * 66.25212 * 23 14 13 41 41 H 1.09001 * 109.50032 * 294.68290 * 24 23 14 42 42 H 1.09002 * 109.49683 * 174.58397 * 24 23 14 43 43 H 1.08998 * 109.47006 * 180.02562 * 27 25 24 44 44 H 1.08994 * 109.47486 * 300.07064 * 27 25 24 45 45 H 1.09008 * 109.46603 * 60.07025 * 27 25 24 46 46 H 1.09001 * 109.46946 * 263.41626 * 29 28 3 47 47 H 1.08997 * 109.47532 * 23.41145 * 29 28 3 48 48 H 1.08994 * 109.47462 * 143.41796 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8844 3.5622 0.0000 6 6 3.1951 3.6893 0.0056 7 6 4.0197 2.5638 -0.0009 8 6 5.4910 2.7106 -0.0016 9 8 6.1998 1.7285 0.0997 10 7 6.0462 3.9331 -0.1204 11 6 7.5039 4.0785 -0.1217 12 1 7.9437 3.3408 0.5495 13 6 8.0382 3.8611 -1.5409 14 7 7.5380 4.9407 -2.4042 15 6 6.8738 4.6530 -3.5666 16 1 6.1313 5.3381 -3.9481 17 6 7.1552 3.4806 -4.2547 18 7 8.2624 2.8168 -3.9987 19 14 5.9621 2.8452 -5.5440 20 1 4.8023 3.7674 -5.6426 21 1 6.6478 2.7706 -6.8591 22 1 5.4878 1.4926 -5.1556 23 6 7.7636 6.3340 -1.9961 24 6 7.2325 6.5228 -0.5717 25 6 7.8772 5.4856 0.3505 26 1 8.9608 5.6013 0.3257 27 6 7.3753 5.6932 1.7809 28 6 3.4320 1.2936 -0.0005 29 6 4.2810 0.0486 -0.0020 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2195 2.3226 0.0005 34 1 3.6363 4.6750 0.0101 35 1 5.4805 4.7165 -0.2050 36 1 9.1279 3.8792 -1.5278 37 1 7.6910 2.8996 -1.9188 38 1 8.4591 1.9978 -4.4798 39 1 7.2353 7.0036 -2.6749 40 1 8.8304 6.5560 -2.0208 41 1 6.1504 6.3915 -0.5665 42 1 7.4796 7.5249 -0.2211 43 1 7.8348 4.9548 2.4379 44 1 7.6411 6.6952 2.1174 45 1 6.2918 5.5768 1.8061 46 1 4.5834 -0.1860 1.0186 47 1 3.7064 -0.7825 -0.4107 48 1 5.1672 0.2138 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966908560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:09 Heat of formation + Delta-G solvation = -15.221091 kcal Electronic energy + Delta-G solvation = -30434.076009 eV Core-core repulsion = 26490.106812 eV Total energy + Delta-G solvation = -3943.969197 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.97441 -39.55457 -38.19326 -37.37986 -34.23890 -33.57686 -32.93734 -31.12384 -30.75776 -29.04816 -27.82911 -27.67291 -27.18494 -24.27956 -23.79014 -22.52268 -21.94636 -21.10504 -20.63021 -18.71244 -18.33378 -17.41289 -16.65169 -16.39444 -16.29942 -16.10718 -15.07748 -14.97511 -14.56355 -14.28373 -14.05114 -13.84502 -13.61945 -13.53069 -13.25298 -12.96501 -12.88702 -12.64878 -12.62974 -12.49622 -12.19488 -11.98237 -11.73328 -11.63256 -11.58158 -11.38775 -11.04870 -10.91419 -10.73239 -10.51257 -10.20567 -9.95824 -9.86837 -9.66311 -9.50694 -9.39348 -9.06082 -8.50619 -8.45718 -8.37568 -6.63127 -5.76604 -3.19863 0.69413 1.21639 2.92440 3.16832 3.38276 3.46659 3.47458 3.66788 3.96809 4.30205 4.47483 4.51068 4.72965 4.79557 4.88688 4.94133 5.14876 5.18341 5.23418 5.26690 5.31981 5.34501 5.43012 5.55529 5.62203 5.83117 5.87304 5.92481 5.96777 5.99531 6.14672 6.20972 6.27679 6.28110 6.35617 6.43328 6.51426 6.61382 6.69722 6.76181 6.87872 6.98845 7.03731 7.35785 7.66058 7.80792 7.82278 8.03008 8.47595 8.69839 9.22470 9.86366 10.42378 11.31399 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.004911 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.324686 B = 5700.682777 C = 7104.730256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.063 3.937 4 C 0.034 3.966 5 N -0.458 5.458 6 C 0.103 3.897 7 C -0.141 4.141 8 C 0.561 3.439 9 O -0.531 6.531 10 N -0.689 5.689 11 C 0.126 3.874 12 H 0.078 0.922 13 C 0.161 3.839 14 N -0.587 5.587 15 C -0.253 4.253 16 H 0.063 0.937 17 C 0.009 3.991 18 N -0.896 5.896 19 Si 0.892 3.108 20 H -0.278 1.278 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.142 3.858 24 C -0.129 4.129 25 C -0.094 4.094 26 H 0.079 0.921 27 C -0.145 4.145 28 C -0.013 4.013 29 C -0.113 4.113 30 H 0.102 0.898 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.159 0.841 34 H 0.160 0.840 35 H 0.394 0.606 36 H 0.027 0.973 37 H 0.095 0.905 38 H 0.253 0.747 39 H 0.053 0.947 40 H 0.018 0.982 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.077 0.923 47 H 0.064 0.936 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.448 0.195 12.073 16.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.015 3.985 4 C -0.124 4.124 5 N -0.168 5.168 6 C -0.057 4.057 7 C -0.147 4.147 8 C 0.347 3.653 9 O -0.409 6.409 10 N -0.339 5.339 11 C 0.021 3.979 12 H 0.096 0.904 13 C 0.035 3.965 14 N -0.310 5.310 15 C -0.383 4.383 16 H 0.081 0.919 17 C -0.190 4.190 18 N -0.540 5.540 19 Si 0.722 3.278 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.215 1.215 23 C 0.016 3.984 24 C -0.169 4.169 25 C -0.113 4.113 26 H 0.097 0.903 27 C -0.202 4.202 28 C -0.022 4.022 29 C -0.169 4.169 30 H 0.121 0.879 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.176 0.824 34 H 0.177 0.823 35 H 0.230 0.770 36 H 0.044 0.956 37 H 0.114 0.886 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.096 0.904 47 H 0.083 0.917 48 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -11.296 -0.104 12.037 16.508 hybrid contribution -0.717 -0.544 -0.874 1.254 sum -12.013 -0.648 11.162 16.411 Atomic orbital electron populations 1.23116 0.78233 1.04292 1.01478 1.86097 1.21313 1.25689 1.88759 1.19752 0.92377 0.85916 1.00416 1.22984 1.00467 0.87178 1.01731 1.67499 1.11979 1.25904 1.11378 1.22804 0.88635 0.98175 0.96070 1.20876 0.95547 0.93532 1.04700 1.17736 0.86243 0.83943 0.77423 1.90712 1.62857 1.37183 1.50188 1.45750 1.08346 1.07600 1.72237 1.21848 0.79223 0.95788 1.01083 0.90378 1.21195 0.95364 0.94676 0.85305 1.43994 1.66124 0.98791 1.22068 1.19106 1.14060 1.05674 0.99447 0.91887 1.24999 0.96101 1.00139 0.97768 1.70004 1.22369 1.18096 1.43557 0.86380 0.81002 0.78932 0.81441 1.20305 1.21671 1.21547 1.20932 0.97035 0.88155 0.92315 1.22089 0.99787 0.97162 0.97840 1.21319 1.00800 0.95080 0.94116 0.90306 1.21855 1.01011 1.00841 0.96506 1.19857 0.90668 0.96108 0.95539 1.20918 0.99854 0.92357 1.03786 0.87939 0.92490 0.92411 0.82384 0.82322 0.76975 0.95554 0.88645 0.93658 0.92806 0.96406 0.92804 0.92681 0.93056 0.93082 0.93080 0.90411 0.91745 0.87877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 101.05 0.99 1.17 16 2 O -0.31 -3.76 9.57 -19.49 -0.19 -3.94 16 3 C 0.06 0.88 6.68 -39.13 -0.26 0.62 16 4 C 0.03 0.44 10.21 -17.30 -0.18 0.26 16 5 N -0.46 -6.72 10.34 -12.79 -0.13 -6.85 16 6 C 0.10 1.53 10.69 -17.13 -0.18 1.35 16 7 C -0.14 -2.36 5.89 -104.84 -0.62 -2.98 16 8 C 0.56 10.49 7.69 -12.32 -0.09 10.40 16 9 O -0.53 -11.28 13.16 5.33 0.07 -11.21 16 10 N -0.69 -11.95 4.21 -54.63 -0.23 -12.18 16 11 C 0.13 2.31 2.23 -67.81 -0.15 2.16 16 12 H 0.08 1.47 7.58 -51.93 -0.39 1.07 16 13 C 0.16 3.76 4.90 -3.67 -0.02 3.74 16 14 N -0.59 -13.94 2.91 -172.27 -0.50 -14.44 16 15 C -0.25 -6.79 9.57 -15.06 -0.14 -6.94 16 16 H 0.06 1.68 7.89 -52.49 -0.41 1.26 16 17 C 0.01 0.26 4.91 -17.43 -0.09 0.17 16 18 N -0.90 -26.30 11.26 55.49 0.62 -25.67 16 19 Si 0.89 22.25 29.59 -169.99 -5.03 17.22 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 C 0.14 2.77 6.52 -3.71 -0.02 2.75 16 24 C -0.13 -1.97 5.20 -26.61 -0.14 -2.11 16 25 C -0.09 -1.41 2.48 -90.58 -0.22 -1.64 16 26 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 27 C -0.14 -1.79 9.05 37.16 0.34 -1.45 16 28 C -0.01 -0.20 5.97 -103.76 -0.62 -0.82 16 29 C -0.11 -1.81 8.70 36.00 0.31 -1.49 16 30 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.34 7.67 -51.93 -0.40 -0.06 16 32 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 33 H 0.16 1.51 6.30 -52.49 -0.33 1.17 16 34 H 0.16 2.03 6.46 -52.49 -0.34 1.70 16 35 H 0.39 6.15 4.74 -40.82 -0.19 5.95 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.10 2.64 6.12 -51.93 -0.32 2.32 16 38 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 40 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.81 6.40 -51.93 -0.33 0.47 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.05 0.61 7.54 -51.92 -0.39 0.22 16 46 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 47 H 0.06 0.94 7.44 -51.93 -0.39 0.55 16 48 H 0.10 1.94 5.96 -51.93 -0.31 1.63 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -32.17 376.01 -7.95 -40.11 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.13 Total: 6.12 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.10 Total: 5.18 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: -0.24 Total: -59.15 kcal Atomic # 8 Polarization: -15.03 SS G_CDS: -0.12 Total: -15.15 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.17 -7.95 -40.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.894 kcal (2) G-P(sol) polarization free energy of solvation -32.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds