Wall clock time and date at job start Tue Mar 31 2020 17:59:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35922 * 116.99428 * 2 1 4 4 C 1.38848 * 120.40695 * 0.02562 * 3 2 1 5 5 N 1.31886 * 121.00157 * 180.02562 * 4 3 2 6 6 C 1.31687 * 121.93867 * 359.66059 * 5 4 3 7 7 C 1.39530 * 120.68638 * 0.63174 * 6 5 4 8 8 C 1.47862 * 120.52790 * 179.68110 * 7 6 5 9 9 O 1.21541 * 119.99754 * 174.16481 * 8 7 6 10 10 N 1.34784 * 119.99757 * 353.88544 * 8 7 6 11 11 C 1.46500 * 119.99526 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.49677 * 324.99570 * 11 10 8 13 13 C 1.53189 * 109.49853 * 85.06315 * 11 10 8 14 14 N 1.46996 * 108.73642 * 65.34625 * 13 11 10 15 15 C 1.36938 * 120.61530 * 233.61332 * 14 13 11 16 16 H 1.07995 * 120.00525 * 151.12674 * 15 14 13 17 17 C 1.38817 * 119.99359 * 331.12056 * 15 14 13 18 18 N 1.31616 * 120.00399 * 342.97928 * 17 15 14 19 19 Si 1.86801 * 119.99725 * 162.97736 * 17 15 14 20 20 H 1.48503 * 109.47238 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47451 * 120.00331 * 19 17 15 22 22 H 1.48502 * 109.47154 * 240.00476 * 19 17 15 23 23 C 1.46930 * 118.75925 * 53.58572 * 14 13 11 24 24 C 1.53188 * 108.77477 * 306.39418 * 23 14 13 25 25 C 1.53040 * 109.31590 * 54.63315 * 24 23 14 26 26 H 1.09000 * 109.46004 * 58.65032 * 25 24 23 27 27 C 1.52996 * 109.46404 * 178.61156 * 25 24 23 28 28 C 1.38844 * 120.40141 * 180.02562 * 3 2 1 29 29 C 1.50692 * 120.88195 * 0.03756 * 28 3 2 30 30 H 1.09001 * 109.46488 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47501 * 300.00214 * 1 2 3 32 32 H 1.08994 * 109.47190 * 60.00841 * 1 2 3 33 33 H 1.08002 * 119.50409 * 359.97438 * 4 3 2 34 34 H 1.07994 * 119.65558 * 180.31429 * 6 5 4 35 35 H 0.96998 * 119.99946 * 0.02562 * 10 8 7 36 36 H 1.08998 * 109.58261 * 185.09698 * 13 11 10 37 37 H 1.08991 * 109.58885 * 305.52864 * 13 11 10 38 38 H 0.97001 * 120.00068 * 180.02562 * 18 17 15 39 39 H 1.08999 * 109.58610 * 186.60507 * 23 14 13 40 40 H 1.08999 * 109.69886 * 66.25212 * 23 14 13 41 41 H 1.09001 * 109.50032 * 294.68290 * 24 23 14 42 42 H 1.09002 * 109.49683 * 174.58397 * 24 23 14 43 43 H 1.08998 * 109.47006 * 180.02562 * 27 25 24 44 44 H 1.08994 * 109.47486 * 300.07064 * 27 25 24 45 45 H 1.09008 * 109.46603 * 60.07025 * 27 25 24 46 46 H 1.09001 * 109.46946 * 263.41626 * 29 28 3 47 47 H 1.08997 * 109.47532 * 23.41145 * 29 28 3 48 48 H 1.08994 * 109.47462 * 143.41796 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8844 3.5622 0.0000 6 6 3.1951 3.6893 0.0056 7 6 4.0197 2.5638 -0.0009 8 6 5.4910 2.7106 -0.0016 9 8 6.1998 1.7285 0.0997 10 7 6.0462 3.9331 -0.1204 11 6 7.5039 4.0785 -0.1217 12 1 7.9437 3.3408 0.5495 13 6 8.0382 3.8611 -1.5409 14 7 7.5380 4.9407 -2.4042 15 6 6.8738 4.6530 -3.5666 16 1 6.1313 5.3381 -3.9481 17 6 7.1552 3.4806 -4.2547 18 7 8.2624 2.8168 -3.9987 19 14 5.9621 2.8452 -5.5440 20 1 4.8023 3.7674 -5.6426 21 1 6.6478 2.7706 -6.8591 22 1 5.4878 1.4926 -5.1556 23 6 7.7636 6.3340 -1.9961 24 6 7.2325 6.5228 -0.5717 25 6 7.8772 5.4856 0.3505 26 1 8.9608 5.6013 0.3257 27 6 7.3753 5.6932 1.7809 28 6 3.4320 1.2936 -0.0005 29 6 4.2810 0.0486 -0.0020 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8900 33 1 0.2195 2.3226 0.0005 34 1 3.6363 4.6750 0.0101 35 1 5.4805 4.7165 -0.2050 36 1 9.1279 3.8792 -1.5278 37 1 7.6910 2.8996 -1.9188 38 1 8.4591 1.9978 -4.4798 39 1 7.2353 7.0036 -2.6749 40 1 8.8304 6.5560 -2.0208 41 1 6.1504 6.3915 -0.5665 42 1 7.4796 7.5249 -0.2211 43 1 7.8348 4.9548 2.4379 44 1 7.6411 6.6952 2.1174 45 1 6.2918 5.5768 1.8061 46 1 4.5834 -0.1860 1.0186 47 1 3.7064 -0.7825 -0.4107 48 1 5.1672 0.2138 -0.6146 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966908560.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:08 Heat of formation + Delta-G solvation = -36.297312 kcal Electronic energy + Delta-G solvation = -30434.989942 eV Core-core repulsion = 26490.106812 eV Total energy + Delta-G solvation = -3944.883131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.12419 -40.90384 -39.36908 -38.72375 -35.98130 -34.81219 -34.40276 -32.87321 -32.05457 -30.50393 -29.03179 -28.72124 -28.46250 -25.92868 -25.11502 -23.86817 -23.23986 -22.73578 -21.90801 -20.27939 -19.47146 -18.71837 -18.35132 -17.56370 -17.38272 -17.00914 -16.84070 -16.50206 -16.03559 -15.71091 -15.38918 -15.17987 -14.95695 -14.92269 -14.71230 -14.33645 -14.15239 -13.95098 -13.86022 -13.78016 -13.56035 -13.16573 -13.12805 -12.97466 -12.78932 -12.70629 -12.60976 -12.45632 -12.36427 -12.20744 -11.93864 -11.54146 -11.30124 -11.10100 -11.04530 -10.64240 -10.57228 -10.38725 -9.91897 -9.53053 -8.62549 -7.87026 -5.31543 -0.47838 0.08035 1.36307 1.40176 1.47697 1.80323 1.99984 2.40677 2.46803 2.72623 3.27621 3.29074 3.41930 3.62843 3.68327 3.70294 3.88537 4.01737 4.05473 4.12368 4.15452 4.35262 4.39773 4.51731 4.54243 4.63706 4.68440 4.70300 4.73915 4.75271 4.84428 4.91691 4.98797 5.01658 5.11107 5.16623 5.20083 5.27525 5.28399 5.39357 5.49530 5.54363 5.61449 5.72300 5.73671 6.13719 6.39851 6.60772 6.70817 7.15145 7.28155 7.88447 8.39071 9.17900 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010325 B = 0.004911 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.324686 B = 5700.682777 C = 7104.730256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.321 6.321 3 C 0.068 3.932 4 C 0.044 3.956 5 N -0.464 5.464 6 C 0.103 3.897 7 C -0.161 4.161 8 C 0.555 3.445 9 O -0.567 6.567 10 N -0.680 5.680 11 C 0.138 3.862 12 H 0.069 0.931 13 C 0.172 3.828 14 N -0.600 5.600 15 C -0.246 4.246 16 H 0.068 0.932 17 C -0.046 4.046 18 N -0.931 5.931 19 Si 0.945 3.055 20 H -0.262 1.262 21 H -0.290 1.290 22 H -0.303 1.303 23 C 0.135 3.865 24 C -0.117 4.117 25 C -0.087 4.087 26 H 0.078 0.922 27 C -0.136 4.136 28 C -0.039 4.039 29 C -0.103 4.103 30 H 0.124 0.876 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.198 0.802 34 H 0.178 0.822 35 H 0.405 0.595 36 H -0.001 1.001 37 H 0.046 0.954 38 H 0.245 0.755 39 H 0.056 0.944 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.092 0.908 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.056 0.944 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.552 2.254 13.545 20.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.233 6.233 3 C 0.020 3.980 4 C -0.113 4.113 5 N -0.174 5.174 6 C -0.056 4.056 7 C -0.166 4.166 8 C 0.342 3.658 9 O -0.448 6.448 10 N -0.330 5.330 11 C 0.032 3.968 12 H 0.087 0.913 13 C 0.045 3.955 14 N -0.323 5.323 15 C -0.377 4.377 16 H 0.086 0.914 17 C -0.242 4.242 18 N -0.578 5.578 19 Si 0.775 3.225 20 H -0.186 1.186 21 H -0.217 1.217 22 H -0.230 1.230 23 C 0.010 3.990 24 C -0.156 4.156 25 C -0.106 4.106 26 H 0.096 0.904 27 C -0.193 4.193 28 C -0.048 4.048 29 C -0.159 4.159 30 H 0.142 0.858 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.215 0.785 34 H 0.195 0.805 35 H 0.243 0.757 36 H 0.017 0.983 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.075 0.925 40 H 0.032 0.968 41 H 0.081 0.919 42 H 0.110 0.890 43 H 0.069 0.931 44 H 0.095 0.905 45 H 0.075 0.925 46 H 0.099 0.901 47 H 0.093 0.907 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -14.432 2.016 13.523 19.880 hybrid contribution 0.172 -1.219 -1.335 1.816 sum -14.259 0.797 12.188 18.775 Atomic orbital electron populations 1.23524 0.75498 1.06350 1.02938 1.86095 1.24086 1.24826 1.88318 1.19727 0.91563 0.87143 0.99525 1.23593 1.02141 0.86170 0.99413 1.67603 1.11526 1.26619 1.11618 1.23019 0.88775 0.98252 0.95522 1.20761 0.94226 0.94672 1.06913 1.18189 0.87315 0.83703 0.76592 1.90698 1.63991 1.38334 1.51745 1.45624 1.07887 1.07757 1.71780 1.21534 0.79732 0.98229 0.97331 0.91341 1.20874 0.93751 0.92671 0.88209 1.44190 1.65964 1.00702 1.21488 1.19426 1.13459 1.05141 0.99655 0.91408 1.25640 0.97431 1.01031 1.00082 1.70158 1.24243 1.18336 1.45054 0.85526 0.79797 0.77809 0.79398 1.18631 1.21729 1.23046 1.21152 0.97125 0.85446 0.95236 1.21975 0.99993 0.99058 0.94561 1.21277 1.00959 0.92286 0.96087 0.90360 1.21770 1.01240 1.02373 0.93926 1.20007 0.92140 0.95770 0.96895 1.20735 0.98678 0.93222 1.03306 0.85833 0.90561 0.91250 0.78522 0.80510 0.75716 0.98300 0.93502 0.94617 0.92532 0.96841 0.91940 0.88959 0.93101 0.90504 0.92483 0.90126 0.90678 0.91404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.32 -7.18 9.57 -92.67 -0.89 -8.06 16 3 C 0.07 1.80 6.68 22.56 0.15 1.95 16 4 C 0.04 1.01 10.21 84.83 0.87 1.88 16 5 N -0.46 -12.34 10.34 -194.39 -2.01 -14.35 16 6 C 0.10 2.91 10.69 85.03 0.91 3.82 16 7 C -0.16 -5.37 5.89 -20.00 -0.12 -5.49 16 8 C 0.56 21.42 7.69 86.79 0.67 22.08 16 9 O -0.57 -25.66 13.16 -3.84 -0.05 -25.71 16 10 N -0.68 -23.56 4.21 -445.02 -1.87 -25.43 16 11 C 0.14 5.12 2.23 45.07 0.10 5.22 16 12 H 0.07 2.68 7.58 -2.39 -0.02 2.66 16 13 C 0.17 8.41 4.90 86.35 0.42 8.83 16 14 N -0.60 -28.90 2.91 -698.94 -2.03 -30.93 16 15 C -0.25 -13.37 9.57 84.03 0.80 -12.56 16 16 H 0.07 3.57 7.89 -2.91 -0.02 3.55 16 17 C -0.05 -2.66 4.91 84.86 0.42 -2.24 16 18 N -0.93 -57.53 11.26 21.65 0.24 -57.29 16 19 Si 0.95 46.96 29.59 68.60 2.03 48.99 16 20 H -0.26 -12.19 7.11 99.48 0.71 -11.49 16 21 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 22 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 23 C 0.14 5.11 6.52 86.36 0.56 5.67 16 24 C -0.12 -3.21 5.20 30.67 0.16 -3.05 16 25 C -0.09 -2.45 2.48 -10.77 -0.03 -2.47 16 26 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 27 C -0.14 -2.90 9.05 71.98 0.65 -2.24 16 28 C -0.04 -1.27 5.97 -19.31 -0.12 -1.39 16 29 C -0.10 -3.45 8.70 71.23 0.62 -2.83 16 30 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.08 0.60 7.67 -2.39 -0.02 0.58 16 32 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 33 H 0.20 2.82 6.30 -2.91 -0.02 2.81 16 34 H 0.18 4.12 6.46 -2.91 -0.02 4.10 16 35 H 0.40 12.02 4.74 -92.71 -0.44 11.58 16 36 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 37 H 0.05 2.76 6.12 -2.39 -0.01 2.74 16 38 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 39 H 0.06 2.09 7.93 -2.39 -0.02 2.07 16 40 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.06 1.64 6.40 -2.39 -0.02 1.62 16 42 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 44 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.06 1.17 7.54 -2.38 -0.02 1.15 16 46 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 47 H 0.07 2.25 7.44 -2.39 -0.02 2.23 16 48 H 0.07 2.76 5.96 -2.39 -0.01 2.75 16 Total: -1.00 -74.53 376.01 3.15 -71.38 By element: Atomic # 1 Polarization: 22.46 SS G_CDS: 0.54 Total: 23.01 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: 7.19 Total: 18.41 kcal Atomic # 7 Polarization: -122.34 SS G_CDS: -5.67 Total: -128.01 kcal Atomic # 8 Polarization: -32.84 SS G_CDS: -0.94 Total: -33.78 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -74.53 3.15 -71.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908560.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.084 kcal (2) G-P(sol) polarization free energy of solvation -74.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds