Wall clock time and date at job start Tue Mar 31 2020 17:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35923 * 116.99622 * 2 1 4 4 C 1.38853 * 120.40722 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00290 * 180.02562 * 4 3 2 6 6 C 1.31689 * 121.93784 * 359.69685 * 5 4 3 7 7 C 1.39523 * 120.68825 * 0.59444 * 6 5 4 8 8 C 1.47858 * 120.52881 * 179.70004 * 7 6 5 9 9 O 1.21551 * 119.99819 * 174.40567 * 8 7 6 10 10 N 1.34777 * 119.99975 * 354.40331 * 8 7 6 11 11 C 1.46494 * 119.99911 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.50078 * 35.06269 * 11 10 8 13 13 C 1.53189 * 109.49797 * 274.99834 * 11 10 8 14 14 N 1.46921 * 108.77615 * 294.68656 * 13 11 10 15 15 C 1.36933 * 120.63417 * 126.40975 * 14 13 11 16 16 H 1.08004 * 119.99776 * 335.31576 * 15 14 13 17 17 C 1.38811 * 120.00183 * 155.30960 * 15 14 13 18 18 N 1.31620 * 120.00119 * 156.35063 * 17 15 14 19 19 Si 1.86807 * 119.99997 * 336.35256 * 17 15 14 20 20 H 1.48494 * 109.47066 * 92.29984 * 19 17 15 21 21 H 1.48498 * 109.47182 * 212.30101 * 19 17 15 22 22 H 1.48496 * 109.47223 * 332.29899 * 19 17 15 23 23 C 1.46924 * 118.73788 * 306.38852 * 14 13 11 24 24 C 1.53191 * 108.89439 * 53.53709 * 23 14 13 25 25 C 1.53043 * 109.49720 * 155.16021 * 11 10 8 26 26 H 1.08999 * 109.45626 * 178.59058 * 25 11 10 27 27 C 1.52997 * 109.45993 * 298.56441 * 25 11 10 28 28 C 1.38843 * 120.40371 * 180.02562 * 3 2 1 29 29 C 1.50703 * 120.88109 * 359.95401 * 28 3 2 30 30 H 1.08994 * 109.47207 * 60.00319 * 1 2 3 31 31 H 1.09001 * 109.46698 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46876 * 299.99676 * 1 2 3 33 33 H 1.08001 * 119.49632 * 0.04611 * 4 3 2 34 34 H 1.07996 * 119.65912 * 180.29184 * 6 5 4 35 35 H 0.96998 * 119.99870 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.59016 * 174.89633 * 13 11 10 37 37 H 1.09001 * 109.58647 * 54.47548 * 13 11 10 38 38 H 0.96997 * 119.99990 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.59131 * 173.39523 * 23 14 13 40 40 H 1.09005 * 109.58903 * 293.67935 * 23 14 13 41 41 H 1.08999 * 109.50047 * 65.38604 * 24 23 14 42 42 H 1.08997 * 109.50020 * 185.48709 * 24 23 14 43 43 H 1.08996 * 109.47398 * 60.00211 * 27 25 11 44 44 H 1.08998 * 109.46863 * 180.02562 * 27 25 11 45 45 H 1.08999 * 109.47297 * 299.99637 * 27 25 11 46 46 H 1.08999 * 109.47005 * 263.14463 * 29 28 3 47 47 H 1.09002 * 109.46920 * 23.14140 * 29 28 3 48 48 H 1.08997 * 109.46953 * 143.13753 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8844 3.5622 -0.0010 6 6 3.1952 3.6893 0.0048 7 6 4.0197 2.5638 -0.0005 8 6 5.4910 2.7106 -0.0006 9 8 6.1998 1.7280 0.0974 10 7 6.0462 3.9339 -0.1092 11 6 7.5039 4.0793 -0.1098 12 1 7.9543 3.2276 -0.6196 13 6 8.0124 4.1384 1.3340 14 7 7.4990 5.3611 1.9665 15 6 6.8145 5.2993 3.1509 16 1 6.3027 4.3908 3.4321 17 6 6.7787 6.4043 3.9903 18 7 5.7967 6.5418 4.8558 19 14 8.1242 7.6965 3.8913 20 1 7.7119 8.7693 2.9511 21 1 8.3510 8.2790 5.2383 22 1 9.3791 7.0682 3.4060 23 6 7.7343 6.6513 1.3044 24 6 7.2314 6.5666 -0.1402 25 6 7.8881 5.3711 -0.8350 26 1 8.9712 5.4913 -0.8133 27 6 7.4120 5.3012 -2.2874 28 6 3.4320 1.2936 -0.0005 29 6 4.2810 0.0485 -0.0001 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2196 2.3225 -0.0002 34 1 3.6365 4.6750 0.0090 35 1 5.4805 4.7180 -0.1878 36 1 9.1023 4.1553 1.3372 37 1 7.6569 3.2662 1.8826 38 1 5.7719 7.3137 5.4426 39 1 7.1952 7.4373 1.8333 40 1 8.8012 6.8744 1.3073 41 1 6.1492 6.4363 -0.1417 42 1 7.4886 7.4841 -0.6694 43 1 6.3289 5.1805 -2.3093 44 1 7.6859 6.2210 -2.8041 45 1 7.8823 4.4523 -2.7835 46 1 4.5874 -0.1819 1.0203 47 1 3.7048 -0.7843 -0.4033 48 1 5.1648 0.2112 -0.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966908561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:12 Heat of formation + Delta-G solvation = -8.545332 kcal Electronic energy + Delta-G solvation = -30131.836296 eV Core-core repulsion = 26188.156581 eV Total energy + Delta-G solvation = -3943.679714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.03558 -39.74921 -38.31307 -37.56893 -34.51500 -33.63411 -32.99552 -31.43153 -30.96878 -29.44788 -27.91236 -27.78615 -27.40813 -24.34043 -23.66767 -22.85572 -22.19530 -21.35463 -20.75813 -18.92404 -18.41956 -17.44316 -16.72767 -16.42206 -16.32025 -16.13959 -15.44256 -15.24235 -14.89532 -14.34893 -14.23380 -13.92831 -13.75383 -13.73417 -13.44335 -13.18583 -12.96101 -12.70544 -12.63632 -12.54715 -12.31596 -12.23645 -11.97700 -11.81936 -11.67636 -11.58945 -11.49430 -11.24403 -10.68277 -10.61381 -10.26498 -9.98882 -9.88976 -9.72789 -9.46869 -9.40231 -9.20114 -8.84850 -8.53065 -8.43300 -6.99004 -5.94450 -3.26528 0.63899 1.19262 2.88405 3.04095 3.30581 3.49179 3.51519 3.52530 3.85779 4.29870 4.44432 4.53121 4.70488 4.74797 4.87488 4.89652 4.93078 4.95948 5.10228 5.16388 5.16963 5.17827 5.28261 5.42678 5.57502 5.70958 5.72321 5.76079 5.83608 5.88365 5.96410 6.05437 6.06907 6.13398 6.18643 6.24912 6.30409 6.36316 6.50681 6.52447 6.62039 6.66712 6.76983 6.94730 7.00555 7.79693 7.83722 7.94688 8.32692 8.49016 8.94646 9.73190 10.08780 11.21276 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003853 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.893987 B = 7265.104756 C = 8180.013875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.307 6.307 3 C 0.060 3.940 4 C 0.038 3.962 5 N -0.456 5.456 6 C 0.110 3.890 7 C -0.148 4.148 8 C 0.566 3.434 9 O -0.537 6.537 10 N -0.692 5.692 11 C 0.135 3.865 12 H 0.085 0.915 13 C 0.137 3.863 14 N -0.601 5.601 15 C -0.255 4.255 16 H 0.084 0.916 17 C 0.023 3.977 18 N -0.905 5.905 19 Si 0.878 3.122 20 H -0.289 1.289 21 H -0.305 1.305 22 H -0.272 1.272 23 C 0.122 3.878 24 C -0.131 4.131 25 C -0.095 4.095 26 H 0.080 0.920 27 C -0.145 4.145 28 C -0.013 4.013 29 C -0.111 4.111 30 H 0.057 0.943 31 H 0.102 0.898 32 H 0.058 0.942 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.399 0.601 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.262 0.738 39 H 0.075 0.925 40 H 0.025 0.975 41 H 0.060 0.940 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.051 0.949 46 H 0.080 0.920 47 H 0.063 0.937 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.454 -8.306 -15.220 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.219 6.219 3 C 0.013 3.987 4 C -0.119 4.119 5 N -0.165 5.165 6 C -0.049 4.049 7 C -0.153 4.153 8 C 0.352 3.648 9 O -0.416 6.416 10 N -0.343 5.343 11 C 0.029 3.971 12 H 0.103 0.897 13 C 0.010 3.990 14 N -0.324 5.324 15 C -0.383 4.383 16 H 0.102 0.898 17 C -0.175 4.175 18 N -0.547 5.547 19 Si 0.709 3.291 20 H -0.217 1.217 21 H -0.233 1.233 22 H -0.198 1.198 23 C -0.003 4.003 24 C -0.170 4.170 25 C -0.114 4.114 26 H 0.099 0.901 27 C -0.202 4.202 28 C -0.022 4.022 29 C -0.167 4.167 30 H 0.075 0.925 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.177 0.823 34 H 0.179 0.821 35 H 0.236 0.764 36 H 0.050 0.950 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.043 0.957 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -6.448 -8.382 -14.990 18.344 hybrid contribution 0.555 0.787 0.240 0.992 sum -5.893 -7.595 -14.750 17.606 Atomic orbital electron populations 1.23121 0.78160 1.04299 1.01565 1.86082 1.21371 1.25655 1.88818 1.19741 0.92365 0.85941 1.00657 1.23041 1.00575 0.87165 1.01102 1.67537 1.11992 1.25842 1.11160 1.22881 0.88630 0.98322 0.95117 1.20780 0.95195 0.93621 1.05676 1.17777 0.86458 0.83708 0.76894 1.90700 1.62999 1.37568 1.50293 1.45782 1.08122 1.07792 1.72594 1.21561 0.79665 0.97278 0.98548 0.89713 1.21333 0.95795 0.90757 0.91157 1.44325 1.64709 1.00338 1.23055 1.18871 1.23924 1.01217 0.94260 0.89847 1.25203 0.97824 0.97764 0.96743 1.69877 1.29854 1.29923 1.25088 0.87041 0.84833 0.81748 0.75471 1.21737 1.23315 1.19764 1.21362 0.97743 0.89758 0.91457 1.22096 1.00351 0.96694 0.97858 1.21332 1.00913 0.94923 0.94217 0.90140 1.21841 1.01267 1.01226 0.95873 1.19815 0.90689 0.95927 0.95764 1.20890 0.99338 0.92353 1.04101 0.92489 0.87929 0.92322 0.82322 0.82105 0.76390 0.95026 0.91224 0.92850 0.90715 0.95742 0.92133 0.92219 0.92847 0.92824 0.92941 0.90169 0.91787 0.88402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.48 9.56 -19.50 -0.19 -3.66 16 3 C 0.06 0.80 6.68 -39.13 -0.26 0.53 16 4 C 0.04 0.49 10.21 -17.30 -0.18 0.31 16 5 N -0.46 -6.79 10.34 -12.79 -0.13 -6.92 16 6 C 0.11 1.65 10.70 -17.13 -0.18 1.47 16 7 C -0.15 -2.31 5.89 -104.84 -0.62 -2.92 16 8 C 0.57 9.48 7.70 -12.32 -0.09 9.39 16 9 O -0.54 -9.94 13.16 5.32 0.07 -9.87 16 10 N -0.69 -10.88 4.21 -54.63 -0.23 -11.11 16 11 C 0.14 2.14 2.24 -67.81 -0.15 1.98 16 12 H 0.08 1.31 7.58 -51.93 -0.39 0.91 16 13 C 0.14 2.66 6.12 -3.71 -0.02 2.64 16 14 N -0.60 -13.56 2.72 -172.32 -0.47 -14.03 16 15 C -0.25 -6.95 10.04 -15.06 -0.15 -7.10 16 16 H 0.08 2.51 8.04 -52.48 -0.42 2.09 16 17 C 0.02 0.67 5.19 -17.43 -0.09 0.58 16 18 N -0.90 -27.48 13.97 55.49 0.78 -26.70 16 19 Si 0.88 22.00 24.38 -169.99 -4.14 17.85 16 20 H -0.29 -6.93 6.54 56.52 0.37 -6.56 16 21 H -0.30 -7.88 7.11 56.52 0.40 -7.47 16 22 H -0.27 -6.74 6.81 56.52 0.39 -6.35 16 23 C 0.12 2.49 4.23 -3.71 -0.02 2.48 16 24 C -0.13 -2.03 5.21 -26.59 -0.14 -2.17 16 25 C -0.09 -1.30 2.47 -90.56 -0.22 -1.53 16 26 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 27 C -0.14 -1.63 9.05 37.16 0.34 -1.30 16 28 C -0.01 -0.19 5.97 -103.75 -0.62 -0.81 16 29 C -0.11 -1.54 8.69 36.01 0.31 -1.22 16 30 H 0.06 0.32 7.67 -51.93 -0.40 -0.08 16 31 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.36 7.67 -51.93 -0.40 -0.03 16 33 H 0.16 1.49 6.30 -52.49 -0.33 1.16 16 34 H 0.16 2.23 6.45 -52.49 -0.34 1.89 16 35 H 0.40 5.95 4.74 -40.82 -0.19 5.75 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.50 7.92 -51.93 -0.41 1.09 16 38 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 39 H 0.07 1.70 4.33 -51.93 -0.22 1.48 16 40 H 0.02 0.50 7.25 -51.93 -0.38 0.12 16 41 H 0.06 0.94 6.41 -51.93 -0.33 0.61 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.05 0.60 7.54 -51.93 -0.39 0.21 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.06 0.78 7.43 -51.93 -0.39 0.39 16 48 H 0.10 1.45 5.98 -51.93 -0.31 1.14 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -32.62 369.61 -6.90 -39.53 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: -7.05 Total: 5.86 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: -1.11 Total: 3.48 kcal Atomic # 7 Polarization: -58.71 SS G_CDS: -0.06 Total: -58.77 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: -0.12 Total: -13.53 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.85 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.62 -6.90 -39.53 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.982 kcal (2) G-P(sol) polarization free energy of solvation -32.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds