Wall clock time and date at job start Tue Mar 31 2020 17:59:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35923 * 116.99622 * 2 1 4 4 C 1.38853 * 120.40722 * 359.97438 * 3 2 1 5 5 N 1.31882 * 121.00290 * 180.02562 * 4 3 2 6 6 C 1.31689 * 121.93784 * 359.69685 * 5 4 3 7 7 C 1.39523 * 120.68825 * 0.59444 * 6 5 4 8 8 C 1.47858 * 120.52881 * 179.70004 * 7 6 5 9 9 O 1.21551 * 119.99819 * 174.40567 * 8 7 6 10 10 N 1.34777 * 119.99975 * 354.40331 * 8 7 6 11 11 C 1.46494 * 119.99911 * 180.02562 * 10 8 7 12 12 H 1.08999 * 109.50078 * 35.06269 * 11 10 8 13 13 C 1.53189 * 109.49797 * 274.99834 * 11 10 8 14 14 N 1.46921 * 108.77615 * 294.68656 * 13 11 10 15 15 C 1.36933 * 120.63417 * 126.40975 * 14 13 11 16 16 H 1.08004 * 119.99776 * 335.31576 * 15 14 13 17 17 C 1.38811 * 120.00183 * 155.30960 * 15 14 13 18 18 N 1.31620 * 120.00119 * 156.35063 * 17 15 14 19 19 Si 1.86807 * 119.99997 * 336.35256 * 17 15 14 20 20 H 1.48494 * 109.47066 * 92.29984 * 19 17 15 21 21 H 1.48498 * 109.47182 * 212.30101 * 19 17 15 22 22 H 1.48496 * 109.47223 * 332.29899 * 19 17 15 23 23 C 1.46924 * 118.73788 * 306.38852 * 14 13 11 24 24 C 1.53191 * 108.89439 * 53.53709 * 23 14 13 25 25 C 1.53043 * 109.49720 * 155.16021 * 11 10 8 26 26 H 1.08999 * 109.45626 * 178.59058 * 25 11 10 27 27 C 1.52997 * 109.45993 * 298.56441 * 25 11 10 28 28 C 1.38843 * 120.40371 * 180.02562 * 3 2 1 29 29 C 1.50703 * 120.88109 * 359.95401 * 28 3 2 30 30 H 1.08994 * 109.47207 * 60.00319 * 1 2 3 31 31 H 1.09001 * 109.46698 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46876 * 299.99676 * 1 2 3 33 33 H 1.08001 * 119.49632 * 0.04611 * 4 3 2 34 34 H 1.07996 * 119.65912 * 180.29184 * 6 5 4 35 35 H 0.96998 * 119.99870 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.59016 * 174.89633 * 13 11 10 37 37 H 1.09001 * 109.58647 * 54.47548 * 13 11 10 38 38 H 0.96997 * 119.99990 * 179.97438 * 18 17 15 39 39 H 1.08996 * 109.59131 * 173.39523 * 23 14 13 40 40 H 1.09005 * 109.58903 * 293.67935 * 23 14 13 41 41 H 1.08999 * 109.50047 * 65.38604 * 24 23 14 42 42 H 1.08997 * 109.50020 * 185.48709 * 24 23 14 43 43 H 1.08996 * 109.47398 * 60.00211 * 27 25 11 44 44 H 1.08998 * 109.46863 * 180.02562 * 27 25 11 45 45 H 1.08999 * 109.47297 * 299.99637 * 27 25 11 46 46 H 1.08999 * 109.47005 * 263.14463 * 29 28 3 47 47 H 1.09002 * 109.46920 * 23.14140 * 29 28 3 48 48 H 1.08997 * 109.46953 * 143.13753 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2111 0.0000 4 6 1.2980 2.3809 -0.0005 5 7 1.8844 3.5622 -0.0010 6 6 3.1952 3.6893 0.0048 7 6 4.0197 2.5638 -0.0005 8 6 5.4910 2.7106 -0.0006 9 8 6.1998 1.7280 0.0974 10 7 6.0462 3.9339 -0.1092 11 6 7.5039 4.0793 -0.1098 12 1 7.9543 3.2276 -0.6196 13 6 8.0124 4.1384 1.3340 14 7 7.4990 5.3611 1.9665 15 6 6.8145 5.2993 3.1509 16 1 6.3027 4.3908 3.4321 17 6 6.7787 6.4043 3.9903 18 7 5.7967 6.5418 4.8558 19 14 8.1242 7.6965 3.8913 20 1 7.7119 8.7693 2.9511 21 1 8.3510 8.2790 5.2383 22 1 9.3791 7.0682 3.4060 23 6 7.7343 6.6513 1.3044 24 6 7.2314 6.5666 -0.1402 25 6 7.8881 5.3711 -0.8350 26 1 8.9712 5.4913 -0.8133 27 6 7.4120 5.3012 -2.2874 28 6 3.4320 1.2936 -0.0005 29 6 4.2810 0.0485 -0.0001 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2196 2.3225 -0.0002 34 1 3.6365 4.6750 0.0090 35 1 5.4805 4.7180 -0.1878 36 1 9.1023 4.1553 1.3372 37 1 7.6569 3.2662 1.8826 38 1 5.7719 7.3137 5.4426 39 1 7.1952 7.4373 1.8333 40 1 8.8012 6.8744 1.3073 41 1 6.1492 6.4363 -0.1417 42 1 7.4886 7.4841 -0.6694 43 1 6.3289 5.1805 -2.3093 44 1 7.6859 6.2210 -2.8041 45 1 7.8823 4.4523 -2.7835 46 1 4.5874 -0.1819 1.0203 47 1 3.7048 -0.7843 -0.4033 48 1 5.1648 0.2112 -0.6170 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966908561.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:11 Heat of formation + Delta-G solvation = -31.123810 kcal Electronic energy + Delta-G solvation = -30132.815372 eV Core-core repulsion = 26188.156581 eV Total energy + Delta-G solvation = -3944.658791 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14282 -40.98721 -39.47597 -38.78024 -36.15098 -34.78352 -34.34314 -33.36026 -32.19285 -30.75100 -29.17205 -28.76531 -28.46408 -25.81765 -25.03615 -24.22438 -23.35114 -22.92381 -21.93078 -20.36657 -19.49450 -18.71597 -18.39871 -17.54921 -17.38317 -17.19214 -17.00933 -16.72409 -16.19257 -15.66155 -15.35687 -15.19577 -15.16442 -15.11317 -14.89686 -14.40986 -14.21377 -13.99524 -13.85310 -13.80446 -13.73035 -13.59927 -13.16583 -13.03349 -12.92008 -12.72513 -12.62043 -12.37031 -12.29829 -12.21336 -11.83401 -11.56815 -11.35606 -11.13048 -11.11836 -10.70313 -10.63946 -10.42236 -9.98545 -9.53058 -8.88461 -8.13926 -5.41498 -0.49166 0.08531 1.30481 1.43949 1.52453 1.78902 1.94992 2.38909 2.43184 2.69345 3.07291 3.27281 3.35391 3.42203 3.62762 3.67354 3.78461 3.92135 4.03585 4.04285 4.12119 4.34615 4.36408 4.40429 4.53770 4.54130 4.58262 4.64281 4.69798 4.74467 4.76038 4.76682 4.87819 4.98085 5.01174 5.04088 5.06306 5.13932 5.17047 5.22184 5.36414 5.42372 5.49197 5.63550 5.86972 6.12778 6.13240 6.53074 6.72045 6.93890 7.18891 7.65852 8.03637 9.06009 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013550 B = 0.003853 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.893987 B = 7265.104756 C = 8180.013875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.317 6.317 3 C 0.068 3.932 4 C 0.043 3.957 5 N -0.471 5.471 6 C 0.100 3.900 7 C -0.163 4.163 8 C 0.562 3.438 9 O -0.560 6.560 10 N -0.688 5.688 11 C 0.142 3.858 12 H 0.093 0.907 13 C 0.135 3.865 14 N -0.610 5.610 15 C -0.238 4.238 16 H 0.038 0.962 17 C -0.034 4.034 18 N -0.956 5.956 19 Si 0.947 3.053 20 H -0.268 1.268 21 H -0.318 1.318 22 H -0.264 1.264 23 C 0.115 3.885 24 C -0.123 4.123 25 C -0.086 4.086 26 H 0.094 0.906 27 C -0.137 4.137 28 C -0.033 4.033 29 C -0.101 4.101 30 H 0.074 0.926 31 H 0.126 0.874 32 H 0.067 0.933 33 H 0.195 0.805 34 H 0.166 0.834 35 H 0.403 0.597 36 H 0.046 0.954 37 H 0.036 0.964 38 H 0.260 0.740 39 H 0.051 0.949 40 H 0.035 0.965 41 H 0.057 0.943 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.073 0.927 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.081 0.919 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.531 -7.714 -17.973 20.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.229 6.229 3 C 0.020 3.980 4 C -0.115 4.115 5 N -0.181 5.181 6 C -0.059 4.059 7 C -0.168 4.168 8 C 0.349 3.651 9 O -0.441 6.441 10 N -0.339 5.339 11 C 0.036 3.964 12 H 0.111 0.889 13 C 0.009 3.991 14 N -0.335 5.335 15 C -0.368 4.368 16 H 0.056 0.944 17 C -0.229 4.229 18 N -0.602 5.602 19 Si 0.776 3.224 20 H -0.195 1.195 21 H -0.247 1.247 22 H -0.189 1.189 23 C -0.009 4.009 24 C -0.162 4.162 25 C -0.105 4.105 26 H 0.112 0.888 27 C -0.194 4.194 28 C -0.042 4.042 29 C -0.157 4.157 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.085 0.915 33 H 0.212 0.788 34 H 0.183 0.817 35 H 0.241 0.759 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.109 0.891 43 H 0.070 0.930 44 H 0.092 0.908 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.507 -7.786 -17.805 20.493 hybrid contribution 0.445 0.421 1.107 1.265 sum -6.063 -7.365 -16.697 19.230 Atomic orbital electron populations 1.23517 0.75599 1.06397 1.02800 1.86085 1.23955 1.24570 1.88294 1.19736 0.91843 0.86967 0.99460 1.23592 1.02154 0.86305 0.99419 1.67576 1.11751 1.27017 1.11716 1.22939 0.88970 0.98348 0.95642 1.20738 0.94500 0.94421 1.07110 1.18049 0.87070 0.83667 0.76341 1.90680 1.63677 1.38300 1.51466 1.45777 1.08268 1.07704 1.72112 1.21487 0.79564 0.99259 0.96080 0.88920 1.21421 0.96463 0.88279 0.92932 1.44350 1.64748 1.02376 1.22009 1.18667 1.22791 0.99298 0.96012 0.94430 1.25795 0.99682 1.00477 0.96916 1.70015 1.31962 1.31253 1.26989 0.85930 0.81768 0.79628 0.75043 1.19461 1.24706 1.18908 1.21474 0.98052 0.87517 0.93889 1.22016 1.00217 0.99077 0.94892 1.21303 1.01592 0.92303 0.95297 0.88764 1.21766 1.01172 1.02663 0.93834 1.20023 0.91935 0.95793 0.96497 1.20768 0.99074 0.92800 1.03099 0.90750 0.85587 0.91479 0.78816 0.81742 0.75899 0.93624 0.94530 0.93137 0.93131 0.94734 0.92421 0.89060 0.93026 0.90826 0.92147 0.91486 0.90070 0.89566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.12 9.82 113.37 1.11 1.23 16 2 O -0.32 -6.59 9.56 -92.68 -0.89 -7.47 16 3 C 0.07 1.72 6.68 22.56 0.15 1.87 16 4 C 0.04 1.02 10.21 84.83 0.87 1.89 16 5 N -0.47 -13.73 10.34 -194.39 -2.01 -15.74 16 6 C 0.10 3.04 10.70 85.02 0.91 3.94 16 7 C -0.16 -5.21 5.89 -20.00 -0.12 -5.32 16 8 C 0.56 19.39 7.70 86.79 0.67 20.06 16 9 O -0.56 -21.52 13.16 -3.88 -0.05 -21.57 16 10 N -0.69 -21.67 4.21 -445.04 -1.87 -23.54 16 11 C 0.14 4.33 2.24 45.07 0.10 4.43 16 12 H 0.09 2.74 7.58 -2.39 -0.02 2.72 16 13 C 0.14 5.30 6.12 86.36 0.53 5.83 16 14 N -0.61 -27.65 2.72 -699.11 -1.90 -29.55 16 15 C -0.24 -13.49 10.04 84.03 0.84 -12.64 16 16 H 0.04 2.43 8.04 -2.91 -0.02 2.41 16 17 C -0.03 -1.99 5.19 84.86 0.44 -1.55 16 18 N -0.96 -60.35 13.97 21.65 0.30 -60.05 16 19 Si 0.95 46.07 24.38 68.60 1.67 47.75 16 20 H -0.27 -12.02 6.54 99.48 0.65 -11.37 16 21 H -0.32 -16.02 7.11 99.48 0.71 -15.31 16 22 H -0.26 -12.35 6.81 99.48 0.68 -11.68 16 23 C 0.12 4.47 4.23 86.36 0.37 4.84 16 24 C -0.12 -3.46 5.21 30.68 0.16 -3.31 16 25 C -0.09 -2.09 2.47 -10.76 -0.03 -2.12 16 26 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 27 C -0.14 -2.57 9.05 71.98 0.65 -1.92 16 28 C -0.03 -1.00 5.97 -19.30 -0.12 -1.12 16 29 C -0.10 -2.87 8.69 71.24 0.62 -2.26 16 30 H 0.07 0.57 7.67 -2.39 -0.02 0.56 16 31 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.64 7.67 -2.39 -0.02 0.62 16 33 H 0.20 3.06 6.30 -2.91 -0.02 3.04 16 34 H 0.17 4.66 6.45 -2.91 -0.02 4.65 16 35 H 0.40 11.95 4.74 -92.71 -0.44 11.51 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.04 1.65 7.92 -2.39 -0.02 1.63 16 38 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 39 H 0.05 2.22 4.33 -2.39 -0.01 2.21 16 40 H 0.03 1.29 7.25 -2.38 -0.02 1.27 16 41 H 0.06 1.67 6.41 -2.39 -0.02 1.65 16 42 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.05 1.00 7.54 -2.39 -0.02 0.98 16 44 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 47 H 0.08 1.95 7.43 -2.39 -0.02 1.93 16 48 H 0.09 2.64 5.98 -2.39 -0.01 2.62 16 Total: -1.00 -74.12 369.61 2.87 -71.25 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.46 Total: 25.07 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 7.16 Total: 13.86 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -5.48 Total: -128.88 kcal Atomic # 8 Polarization: -28.11 SS G_CDS: -0.94 Total: -29.05 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 1.67 Total: 47.75 kcal Total: -74.12 2.87 -71.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966908561.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.126 kcal (2) G-P(sol) polarization free energy of solvation -74.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds