Wall clock time and date at job start Tue Mar 31 2020 17:50:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 C 1.38351 * 119.40551 * 2 1 4 4 C 1.38343 * 119.45693 * 179.70096 * 3 2 1 5 5 C 1.50700 * 120.82594 * 180.29995 * 4 3 2 6 6 C 1.39985 * 118.34516 * 0.56186 * 4 3 2 7 7 C 1.47523 * 120.59618 * 179.76126 * 6 4 3 8 8 O 1.21590 * 119.99952 * 269.72228 * 7 6 4 9 9 N 1.34780 * 120.00052 * 89.71541 * 7 6 4 10 10 C 1.46507 * 119.99817 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.51850 * 35.08368 * 10 9 7 12 12 C 1.53191 * 109.49759 * 275.00603 * 10 9 7 13 13 N 1.46926 * 108.77328 * 185.41471 * 12 10 9 14 14 C 1.36940 * 120.62683 * 233.62606 * 13 12 10 15 15 H 1.08002 * 119.99558 * 152.58873 * 14 13 12 16 16 C 1.38808 * 120.00064 * 332.58705 * 14 13 12 17 17 N 1.31623 * 119.99861 * 159.37608 * 16 14 13 18 18 Si 1.86791 * 120.00164 * 339.37438 * 16 14 13 19 19 H 1.48496 * 109.47163 * 92.94622 * 18 16 14 20 20 H 1.48501 * 109.47160 * 212.94444 * 18 16 14 21 21 H 1.48496 * 109.47536 * 332.94120 * 18 16 14 22 22 C 1.46922 * 118.74037 * 53.60826 * 13 12 10 23 23 C 1.53201 * 108.77511 * 306.38887 * 22 13 12 24 24 C 1.53037 * 109.30822 * 54.63679 * 23 22 13 25 25 H 1.08999 * 109.46609 * 58.65898 * 24 23 22 26 26 C 1.53001 * 109.45958 * 178.61797 * 24 23 22 27 27 C 1.40276 * 118.80704 * 359.48448 * 6 4 3 28 28 O 1.35434 * 119.80064 * 180.25418 * 27 6 4 29 29 N 1.31883 * 119.40535 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47103 * 269.97649 * 1 2 3 31 31 H 1.09001 * 109.47113 * 29.97517 * 1 2 3 32 32 H 1.08993 * 109.46886 * 149.97900 * 1 2 3 33 33 H 1.08004 * 120.27014 * 0.02562 * 3 2 1 34 34 H 1.08998 * 109.46683 * 270.26832 * 5 4 3 35 35 H 1.08997 * 109.47091 * 30.26957 * 5 4 3 36 36 H 1.08996 * 109.47219 * 150.26931 * 5 4 3 37 37 H 0.96992 * 119.99762 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.58977 * 65.62295 * 12 10 9 39 39 H 1.09003 * 109.58193 * 305.20069 * 12 10 9 40 40 H 0.96992 * 120.00296 * 179.97438 * 17 16 14 41 41 H 1.08999 * 109.59014 * 186.60416 * 22 13 12 42 42 H 1.09004 * 109.70736 * 66.24217 * 22 13 12 43 43 H 1.09000 * 109.49725 * 174.58433 * 23 22 13 44 44 H 1.08998 * 109.49756 * 294.68577 * 23 22 13 45 45 H 1.08995 * 109.47436 * 59.99395 * 26 24 23 46 46 H 1.09000 * 109.47831 * 179.97438 * 26 24 23 47 47 H 1.09008 * 109.46971 * 299.99889 * 26 24 23 48 48 H 0.96697 * 114.00079 * 89.99618 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2065 0.0063 5 6 4.3408 2.5013 0.0132 6 6 4.2356 -0.0249 0.0004 7 6 5.7097 -0.0814 0.0014 8 8 6.3179 -0.1043 -1.0512 9 7 6.3823 -0.1076 1.1691 10 6 7.8463 -0.1633 1.1700 11 1 8.2332 0.4134 0.3298 12 6 8.3027 -1.6201 1.0435 13 7 9.7651 -1.6708 1.1766 14 6 10.5321 -2.2792 0.2192 15 1 11.5518 -1.9603 0.0612 16 6 9.9991 -3.3057 -0.5482 17 7 10.5471 -3.6161 -1.7040 18 14 8.5042 -4.2466 0.0593 19 1 7.2714 -3.6204 -0.4824 20 1 8.5862 -5.6563 -0.4001 21 1 8.4664 -4.2111 1.5434 22 6 10.3888 -1.0559 2.3563 23 6 9.9090 0.3947 2.4680 24 6 8.3789 0.4221 2.4799 25 1 8.0115 -0.1699 3.3181 26 6 7.8961 1.8666 2.6260 27 6 3.4758 -1.2041 -0.0005 28 8 4.0992 -2.4064 -0.0010 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5141 33 1 1.6411 2.1375 0.0004 34 1 4.5272 2.8186 -1.0127 35 1 3.7618 3.2662 0.5307 36 1 5.2911 2.3555 0.5268 37 1 5.8971 -0.0897 2.0087 38 1 8.0107 -2.0113 0.0689 39 1 7.8432 -2.2167 1.8316 40 1 10.1749 -4.3336 -2.2401 41 1 11.4732 -1.0747 2.2479 42 1 10.1015 -1.6058 3.2526 43 1 10.2879 0.8331 3.3912 44 1 10.2765 0.9661 1.6157 45 1 8.2638 2.4591 1.7884 46 1 6.8063 1.8865 2.6340 47 1 8.2743 2.2834 3.5596 48 1 4.2800 -2.7560 0.8822 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967601415.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:24 Heat of formation + Delta-G solvation = -22.920465 kcal Electronic energy + Delta-G solvation = -30235.129285 eV Core-core repulsion = 26290.826218 eV Total energy + Delta-G solvation = -3944.303067 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.10162 -39.50041 -37.79077 -37.47995 -34.55955 -34.39535 -33.22393 -32.00419 -31.34173 -29.70744 -28.40120 -27.89235 -27.38295 -23.99194 -23.77582 -22.83947 -21.80904 -21.15303 -20.40029 -19.60568 -18.57678 -17.70518 -17.32485 -16.85688 -16.13285 -15.65449 -15.22524 -14.88220 -14.49061 -14.34954 -14.11329 -13.91646 -13.73315 -13.56820 -13.38022 -13.30200 -13.23971 -13.10813 -12.69788 -12.42852 -12.37239 -12.23599 -12.06251 -11.99445 -11.86431 -11.77839 -11.40768 -10.89258 -10.69686 -10.55556 -10.28824 -10.22596 -9.99845 -9.77285 -9.72126 -9.51514 -9.37969 -8.98948 -8.90198 -8.48110 -6.95019 -5.89430 -3.26371 0.58106 0.86550 2.69322 3.09170 3.31365 3.40763 3.45686 3.51287 3.56696 4.22778 4.26751 4.60361 4.64360 4.74571 4.92000 4.94490 5.01282 5.05550 5.09687 5.15231 5.21869 5.23788 5.29304 5.32711 5.46987 5.54779 5.68280 5.71886 5.73848 5.78927 5.81139 5.87791 5.90802 6.00938 6.06726 6.21449 6.24508 6.28413 6.47360 6.51547 6.60734 6.64469 6.77435 6.93271 7.30405 7.62482 7.66601 7.99907 8.36802 8.38122 8.97512 9.77171 10.12120 11.26301 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013157 B = 0.004380 C = 0.003595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2127.711604 B = 6390.641118 C = 7787.217452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.189 4.189 4 C 0.010 3.990 5 C -0.124 4.124 6 C -0.198 4.198 7 C 0.568 3.432 8 O -0.508 6.508 9 N -0.717 5.717 10 C 0.132 3.868 11 H 0.093 0.907 12 C 0.120 3.880 13 N -0.600 5.600 14 C -0.266 4.266 15 H 0.086 0.914 16 C 0.029 3.971 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.280 1.280 20 H -0.303 1.303 21 H -0.273 1.273 22 C 0.145 3.855 23 C -0.127 4.127 24 C -0.092 4.092 25 H 0.068 0.932 26 C -0.144 4.144 27 C 0.356 3.644 28 O -0.469 6.469 29 N -0.506 5.506 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.393 0.607 38 H 0.081 0.919 39 H 0.023 0.977 40 H 0.263 0.737 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.060 0.940 44 H 0.065 0.935 45 H 0.054 0.946 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.236 13.871 11.212 25.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.209 4.209 4 C 0.002 3.998 5 C -0.180 4.180 6 C -0.205 4.205 7 C 0.351 3.649 8 O -0.382 6.382 9 N -0.368 5.368 10 C 0.027 3.973 11 H 0.111 0.889 12 C -0.007 4.007 13 N -0.324 5.324 14 C -0.394 4.394 15 H 0.104 0.896 16 C -0.170 4.170 17 N -0.546 5.546 18 Si 0.707 3.293 19 H -0.207 1.207 20 H -0.232 1.232 21 H -0.198 1.198 22 C 0.019 3.981 23 C -0.166 4.166 24 C -0.111 4.111 25 H 0.087 0.913 26 C -0.202 4.202 27 C 0.176 3.824 28 O -0.276 6.276 29 N -0.227 5.227 30 H 0.100 0.900 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.161 0.839 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.227 0.773 38 H 0.099 0.901 39 H 0.041 0.959 40 H 0.073 0.927 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.079 0.921 44 H 0.084 0.916 45 H 0.073 0.927 46 H 0.068 0.932 47 H 0.072 0.928 48 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -18.147 12.964 9.669 24.308 hybrid contribution -0.607 -0.135 1.028 1.201 sum -18.755 12.830 10.697 25.115 Atomic orbital electron populations 1.20789 0.88208 1.03909 1.03407 1.21171 0.96941 0.87111 0.92100 1.21748 0.93596 0.99533 1.06001 1.20259 0.93630 0.94153 0.91715 1.20941 1.00150 0.92967 1.03943 1.20966 0.95343 0.94068 1.10109 1.17756 0.85738 0.76833 0.84575 1.90903 1.68725 1.47468 1.31064 1.46146 1.08125 1.75029 1.07537 1.21858 0.77000 0.99943 0.98539 0.88927 1.21699 0.85418 0.92845 1.00713 1.44269 1.00683 1.65610 1.21819 1.18870 0.97791 1.12265 1.10520 0.89597 1.25255 0.97747 0.97641 0.96387 1.69827 1.42606 1.31593 1.10540 0.87000 0.83935 0.79169 0.79193 1.20709 1.23173 1.19802 1.20984 0.97428 0.90487 0.89185 1.22077 0.93479 0.99815 1.01278 1.21305 0.97113 0.95876 0.96801 0.91348 1.21847 1.00366 0.96432 1.01509 1.19066 0.86300 0.84676 0.92347 1.84832 1.76518 1.32443 1.33796 1.67063 1.09152 1.30400 1.16068 0.89963 0.90255 0.90121 0.83888 0.89525 0.90244 0.90535 0.77342 0.90117 0.95919 0.92722 0.91624 0.95963 0.92110 0.91593 0.92652 0.93238 0.92813 0.73787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 36.01 0.37 -0.35 16 2 C 0.16 1.75 6.78 -82.52 -0.56 1.19 16 3 C -0.19 -1.77 9.41 -39.50 -0.37 -2.14 16 4 C 0.01 0.12 5.95 -103.93 -0.62 -0.50 16 5 C -0.12 -1.13 9.69 36.01 0.35 -0.78 16 6 C -0.20 -2.91 5.66 -104.69 -0.59 -3.50 16 7 C 0.57 9.89 5.39 -12.47 -0.07 9.83 16 8 O -0.51 -11.66 16.77 5.29 0.09 -11.57 16 9 N -0.72 -10.67 4.37 -54.73 -0.24 -10.91 16 10 C 0.13 2.34 2.06 -67.81 -0.14 2.20 16 11 H 0.09 1.93 7.58 -51.93 -0.39 1.53 16 12 C 0.12 2.69 3.78 -3.71 -0.01 2.67 16 13 N -0.60 -14.41 2.77 -172.31 -0.48 -14.89 16 14 C -0.27 -7.67 10.03 -15.06 -0.15 -7.82 16 15 H 0.09 2.61 8.06 -52.49 -0.42 2.18 16 16 C 0.03 0.89 5.23 -17.43 -0.09 0.80 16 17 N -0.90 -28.99 13.97 55.49 0.78 -28.22 16 18 Si 0.88 23.52 24.35 -169.99 -4.14 19.38 16 19 H -0.28 -7.60 6.62 56.52 0.37 -7.23 16 20 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 21 H -0.27 -6.98 6.63 56.52 0.37 -6.61 16 22 C 0.15 2.76 6.52 -3.71 -0.02 2.74 16 23 C -0.13 -1.93 5.36 -26.61 -0.14 -2.07 16 24 C -0.09 -1.28 2.27 -90.58 -0.21 -1.49 16 25 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 26 C -0.14 -1.59 9.02 37.16 0.34 -1.25 16 27 C 0.36 5.43 7.77 -16.61 -0.13 5.30 16 28 O -0.47 -7.61 13.01 -17.99 -0.23 -7.84 16 29 N -0.51 -7.04 10.28 -9.21 -0.09 -7.14 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.36 8.07 -51.93 -0.42 -0.05 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 34 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.08 0.49 8.10 -51.93 -0.42 0.07 16 36 H 0.08 0.77 7.19 -51.93 -0.37 0.40 16 37 H 0.39 4.45 8.29 -40.82 -0.34 4.11 16 38 H 0.08 2.15 4.50 -51.93 -0.23 1.91 16 39 H 0.02 0.49 7.08 -51.93 -0.37 0.13 16 40 H 0.26 8.07 8.31 -40.82 -0.34 7.73 16 41 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.05 0.48 7.35 -51.93 -0.38 0.10 16 47 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 48 H 0.40 4.56 9.06 45.56 0.41 4.98 16 LS Contribution 383.80 15.07 5.78 5.78 Total: -1.00 -38.22 383.80 -7.36 -45.58 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -6.77 Total: 5.01 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -2.06 Total: 4.82 kcal Atomic # 7 Polarization: -61.12 SS G_CDS: -0.04 Total: -61.16 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.15 Total: -19.41 kcal Atomic # 14 Polarization: 23.52 SS G_CDS: -4.14 Total: 19.38 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -38.22 -7.36 -45.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967601415.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.656 kcal (2) G-P(sol) polarization free energy of solvation -38.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds