Wall clock time and date at job start Tue Mar 31 2020 17:50:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.37995 * 120.82032 * 2 1 4 4 C 1.39129 * 119.26436 * 180.27292 * 3 2 1 5 5 O 1.35500 * 119.52142 * 179.69900 * 4 3 2 6 6 N 1.32434 * 120.94621 * 359.71596 * 4 3 2 7 7 C 1.31627 * 121.80304 * 0.02562 * 6 4 3 8 8 C 1.50698 * 119.68882 * 180.02562 * 7 6 4 9 9 C 1.39558 * 120.62948 * 359.97438 * 7 6 4 10 10 C 1.47618 * 120.50426 * 180.02562 * 9 7 6 11 11 O 1.21577 * 119.99833 * 90.00099 * 10 9 7 12 12 N 1.34772 * 120.00042 * 270.00193 * 10 9 7 13 13 C 1.46501 * 120.00015 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.49911 * 324.93226 * 13 12 10 15 15 C 1.53189 * 109.50245 * 84.99892 * 13 12 10 16 16 N 1.46920 * 108.77909 * 174.61976 * 15 13 12 17 17 C 1.36929 * 120.63213 * 126.37271 * 16 15 13 18 18 H 1.08004 * 119.99857 * 331.85827 * 17 16 15 19 19 C 1.38820 * 120.00270 * 151.86167 * 17 16 15 20 20 N 1.31615 * 119.99767 * 343.06736 * 19 17 16 21 21 Si 1.86793 * 119.99937 * 163.06391 * 19 17 16 22 22 H 1.48504 * 109.47161 * 90.00124 * 21 19 17 23 23 H 1.48493 * 109.47380 * 209.99931 * 21 19 17 24 24 H 1.48499 * 109.47465 * 330.00224 * 21 19 17 25 25 C 1.46931 * 118.73966 * 306.39168 * 16 15 13 26 26 C 1.53195 * 108.77495 * 53.60626 * 25 16 15 27 27 C 1.53044 * 109.31267 * 305.36747 * 26 25 16 28 28 H 1.08995 * 109.45793 * 301.34092 * 27 26 25 29 29 C 1.53006 * 109.45801 * 181.38417 * 27 26 25 30 30 H 1.09000 * 109.47586 * 270.27355 * 1 2 3 31 31 H 1.09001 * 109.47187 * 30.27761 * 1 2 3 32 32 H 1.09002 * 109.47149 * 150.27885 * 1 2 3 33 33 H 1.08006 * 120.36956 * 359.96665 * 3 2 1 34 34 H 0.96707 * 113.99359 * 270.01368 * 5 4 3 35 35 H 1.09006 * 109.47178 * 269.97721 * 8 7 6 36 36 H 1.08997 * 109.47251 * 29.97362 * 8 7 6 37 37 H 1.09004 * 109.47435 * 149.97600 * 8 7 6 38 38 H 0.97000 * 120.00284 * 0.02562 * 12 10 9 39 39 H 1.09001 * 109.58088 * 54.83154 * 15 13 12 40 40 H 1.08997 * 109.58485 * 294.41588 * 15 13 12 41 41 H 0.97000 * 119.99945 * 180.02562 * 20 19 17 42 42 H 1.09002 * 109.58519 * 293.82387 * 25 16 15 43 43 H 1.08993 * 109.70385 * 173.46325 * 25 16 15 44 44 H 1.09008 * 109.49247 * 65.31603 * 26 25 16 45 45 H 1.08998 * 109.50140 * 185.41417 * 26 25 16 46 46 H 1.08993 * 109.47170 * 59.99641 * 29 27 26 47 47 H 1.08998 * 109.46619 * 180.02562 * 29 27 26 48 48 H 1.09001 * 109.46807 * 299.99543 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3042 2.3078 -0.0120 6 7 4.2547 -0.0066 -0.0056 7 6 3.6205 -1.1600 -0.0005 8 6 4.4080 -2.4448 0.0000 9 6 2.2256 -1.2044 0.0054 10 6 1.5172 -2.4994 0.0117 11 8 1.2299 -3.0300 1.0672 12 7 1.1889 -3.0936 -1.1526 13 6 0.4863 -4.3791 -1.1464 14 1 0.8335 -4.9794 -0.3054 15 6 -1.0207 -4.1377 -1.0145 16 7 -1.7186 -5.4244 -1.1396 17 6 -2.6010 -5.8361 -0.1769 18 1 -2.4796 -5.5051 0.8439 19 6 -3.6517 -6.6788 -0.5130 20 7 -4.0063 -6.8183 -1.7728 21 14 -4.5620 -7.6150 0.8226 22 1 -5.7013 -6.7974 1.3115 23 1 -5.0728 -8.8950 0.2697 24 1 -3.6359 -7.8967 1.9487 25 6 -1.4513 -6.2615 -2.3173 26 6 0.0605 -6.4792 -2.4346 27 6 0.7673 -5.1219 -2.4547 28 1 0.3976 -4.5324 -3.2936 29 6 2.2749 -5.3344 -2.6065 30 1 -0.3634 0.0049 1.0276 31 1 -0.3633 0.8875 -0.5181 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6935 2.1314 -0.0005 34 1 4.5033 2.6422 -0.8973 35 1 4.5940 -2.7574 -1.0276 36 1 5.3586 -2.2881 0.5097 37 1 3.8411 -3.2183 0.5181 38 1 1.4184 -2.6704 -1.9947 39 1 -1.3531 -3.4634 -1.8037 40 1 -1.2364 -3.6980 -0.0407 41 1 -4.7406 -7.4069 -2.0077 42 1 -1.8189 -5.7603 -3.2128 43 1 -1.9514 -7.2234 -2.2055 44 1 0.4117 -7.0597 -1.5814 45 1 0.2802 -7.0174 -3.3566 46 1 2.4753 -5.8624 -3.5387 47 1 2.7784 -4.3678 -2.6204 48 1 2.6449 -5.9245 -1.7680 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968677303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:00 Heat of formation + Delta-G solvation = -31.404639 kcal Electronic energy + Delta-G solvation = -29680.534906 eV Core-core repulsion = 25735.863938 eV Total energy + Delta-G solvation = -3944.670968 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.14604 -39.58071 -37.90963 -37.17209 -34.54683 -34.50335 -33.06921 -31.99631 -31.11236 -29.15615 -28.28421 -27.89769 -27.18856 -24.33956 -23.82951 -22.26148 -21.56324 -21.10829 -20.43603 -19.54366 -18.69451 -17.58244 -17.41686 -16.84486 -16.11508 -15.74056 -14.95192 -14.57109 -14.42658 -14.39244 -13.93955 -13.77937 -13.55031 -13.54129 -13.43452 -13.36431 -13.20733 -12.87162 -12.54887 -12.49008 -12.31730 -12.14034 -12.06237 -11.87155 -11.67942 -11.53447 -11.06840 -10.80158 -10.70380 -10.29836 -10.23327 -10.19722 -9.91038 -9.81120 -9.74396 -9.67762 -9.45663 -9.04697 -8.87043 -8.42399 -6.69031 -5.80241 -3.22619 0.52013 0.87272 2.62595 2.98730 3.33682 3.36839 3.38578 3.45444 3.49917 4.18405 4.28736 4.49267 4.63547 4.76938 4.94771 5.06120 5.10672 5.22256 5.24858 5.31660 5.35108 5.36866 5.40342 5.44404 5.57289 5.67372 5.71099 5.84924 5.87267 5.92514 5.95744 6.02512 6.13199 6.16727 6.18689 6.25855 6.51468 6.58677 6.61928 6.68926 6.79207 6.94169 7.12525 7.32919 7.57701 7.62712 7.63826 7.81715 8.29416 8.44639 9.20483 9.82650 10.38158 11.28500 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017685 B = 0.003084 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.893485 B = 9078.181879 C = 9882.169174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 C -0.196 4.196 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.193 3.807 8 C -0.113 4.113 9 C -0.187 4.187 10 C 0.568 3.432 11 O -0.522 6.522 12 N -0.711 5.711 13 C 0.131 3.869 14 H 0.088 0.912 15 C 0.142 3.858 16 N -0.587 5.587 17 C -0.251 4.251 18 H 0.066 0.934 19 C 0.003 3.997 20 N -0.904 5.904 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.278 1.278 25 C 0.167 3.833 26 C -0.133 4.133 27 C -0.091 4.091 28 H 0.067 0.933 29 C -0.145 4.145 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.395 0.605 39 H 0.017 0.983 40 H 0.058 0.942 41 H 0.253 0.747 42 H 0.018 0.982 43 H 0.089 0.911 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.047 0.953 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.223 13.513 -3.883 20.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.149 3.851 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.054 3.946 8 C -0.170 4.170 9 C -0.193 4.193 10 C 0.352 3.648 11 O -0.397 6.397 12 N -0.361 5.361 13 C 0.026 3.974 14 H 0.106 0.894 15 C 0.014 3.986 16 N -0.309 5.309 17 C -0.381 4.381 18 H 0.084 0.916 19 C -0.195 4.195 20 N -0.548 5.548 21 Si 0.731 3.269 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.204 1.204 25 C 0.042 3.958 26 C -0.173 4.173 27 C -0.110 4.110 28 H 0.085 0.915 29 C -0.202 4.202 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.260 0.740 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.229 0.771 39 H 0.035 0.965 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.036 0.964 43 H 0.107 0.893 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.718 13.023 -2.572 20.573 hybrid contribution -1.167 0.038 -0.278 1.200 sum 14.551 13.061 -2.850 19.760 Atomic orbital electron populations 1.20981 0.88991 1.04199 1.04139 1.20265 0.97142 0.90804 0.91165 1.21878 0.93672 0.99393 1.06821 1.19232 0.87026 0.85000 0.93819 1.84738 1.76061 1.34122 1.33927 1.66969 1.41871 0.97833 1.16157 1.21024 0.89196 0.93094 0.91265 1.20875 1.00571 0.91802 1.03745 1.20822 0.94827 0.94704 1.08933 1.17809 0.78641 0.83759 0.84594 1.90869 1.53669 1.64358 1.30816 1.46185 1.58741 1.23514 1.07646 1.21848 0.94587 0.82345 0.98631 0.89383 1.21180 0.88832 0.89277 0.99265 1.43972 1.47653 1.15542 1.23755 1.19197 1.03652 1.26461 0.88757 0.91618 1.25022 0.96464 1.01937 0.96086 1.70030 1.29149 1.39746 1.15878 0.86306 0.79683 0.79450 0.81437 1.21385 1.21552 1.20371 1.20837 0.89080 0.97437 0.88460 1.22252 0.99967 0.94533 1.00566 1.21306 0.94996 0.98103 0.96577 0.91475 1.21862 0.96073 1.00837 1.01429 0.89370 0.90222 0.90103 0.83651 0.74032 0.89597 0.89720 0.89853 0.77100 0.96538 0.92380 0.93656 0.96350 0.89277 0.92368 0.92696 0.92927 0.93429 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.30 9.69 36.01 0.35 -0.95 16 2 C 0.01 0.16 5.95 -103.96 -0.62 -0.46 16 3 C -0.20 -1.93 9.73 -39.34 -0.38 -2.31 16 4 C 0.33 3.57 7.74 -16.96 -0.13 3.44 16 5 O -0.48 -4.26 13.55 -18.19 -0.25 -4.50 16 6 N -0.51 -6.34 10.28 -9.20 -0.09 -6.44 16 7 C 0.19 2.37 6.82 -82.19 -0.56 1.81 16 8 C -0.11 -1.17 9.78 36.00 0.35 -0.82 16 9 C -0.19 -2.40 5.65 -104.82 -0.59 -2.99 16 10 C 0.57 8.45 4.29 -12.43 -0.05 8.40 16 11 O -0.52 -10.08 16.77 5.30 0.09 -9.99 16 12 N -0.71 -9.53 4.37 -54.70 -0.24 -9.77 16 13 C 0.13 2.19 2.06 -67.81 -0.14 2.05 16 14 H 0.09 1.72 7.58 -51.93 -0.39 1.32 16 15 C 0.14 2.95 6.09 -3.72 -0.02 2.92 16 16 N -0.59 -14.43 2.99 -172.32 -0.52 -14.95 16 17 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 18 H 0.07 1.83 7.89 -52.48 -0.41 1.41 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -25.84 11.19 55.49 0.62 -25.21 16 21 Si 0.90 21.78 29.59 -169.99 -5.03 16.75 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 C 0.17 3.82 5.30 -3.71 -0.02 3.80 16 26 C -0.13 -2.37 5.36 -26.61 -0.14 -2.51 16 27 C -0.09 -1.36 2.27 -90.57 -0.21 -1.56 16 28 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 29 C -0.14 -1.73 9.02 37.16 0.34 -1.40 16 30 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.61 8.10 -51.93 -0.42 0.19 16 32 H 0.08 0.95 7.18 -51.93 -0.37 0.57 16 33 H 0.15 1.06 8.06 -52.48 -0.42 0.63 16 34 H 0.40 1.39 9.06 45.56 0.41 1.81 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.97 7.06 -51.93 -0.37 0.61 16 38 H 0.40 4.26 8.29 -40.82 -0.34 3.92 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 1.29 7.93 -51.93 -0.41 0.88 16 41 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 2.30 6.06 -51.93 -0.31 1.99 16 44 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 47 H 0.05 0.49 7.35 -51.93 -0.38 0.11 16 48 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 388.60 15.07 5.86 5.86 Total: -1.00 -33.53 388.60 -8.41 -41.94 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -6.79 Total: 3.95 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: -2.06 Total: 2.37 kcal Atomic # 7 Polarization: -56.14 SS G_CDS: -0.23 Total: -56.37 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.16 Total: -14.49 kcal Atomic # 14 Polarization: 21.78 SS G_CDS: -5.03 Total: 16.75 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -33.53 -8.41 -41.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.537 kcal (2) G-P(sol) polarization free energy of solvation -33.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds