Wall clock time and date at job start Tue Mar 31 2020 17:50:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38003 * 120.82065 * 2 1 4 4 C 1.39125 * 119.26238 * 179.97438 * 3 2 1 5 5 O 1.35505 * 119.51993 * 179.72123 * 4 3 2 6 6 N 1.32432 * 120.95360 * 0.02562 * 4 3 2 7 7 C 1.31635 * 121.79752 * 359.97438 * 6 4 3 8 8 C 1.50698 * 119.68731 * 180.02562 * 7 6 4 9 9 C 1.39557 * 120.63058 * 359.97438 * 7 6 4 10 10 C 1.47621 * 120.50394 * 180.02562 * 9 7 6 11 11 O 1.21583 * 119.99492 * 269.97775 * 10 9 7 12 12 N 1.34772 * 120.00397 * 89.97764 * 10 9 7 13 13 C 1.46497 * 120.00113 * 179.97438 * 12 10 9 14 14 H 1.09001 * 109.49917 * 324.93891 * 13 12 10 15 15 C 1.53195 * 109.49225 * 85.00117 * 13 12 10 16 16 N 1.46924 * 108.77967 * 65.31933 * 15 13 12 17 17 C 1.36935 * 120.63317 * 233.58595 * 16 15 13 18 18 H 1.07998 * 120.00236 * 150.28993 * 17 16 15 19 19 C 1.38812 * 119.99548 * 330.29602 * 17 16 15 20 20 N 1.31612 * 120.00337 * 345.38312 * 19 17 16 21 21 Si 1.86808 * 119.99946 * 165.38968 * 19 17 16 22 22 H 1.48497 * 109.47407 * 89.99595 * 21 19 17 23 23 H 1.48501 * 109.46871 * 209.99938 * 21 19 17 24 24 H 1.48498 * 109.46749 * 329.99502 * 21 19 17 25 25 C 1.46927 * 118.74024 * 53.60266 * 16 15 13 26 26 C 1.53195 * 108.77699 * 306.39563 * 25 16 15 27 27 C 1.53042 * 109.31251 * 54.63398 * 26 25 16 28 28 H 1.08996 * 109.46012 * 58.65112 * 27 26 25 29 29 C 1.53001 * 109.46090 * 178.61764 * 27 26 25 30 30 H 1.09002 * 109.46986 * 89.99899 * 1 2 3 31 31 H 1.09002 * 109.47174 * 209.99305 * 1 2 3 32 32 H 1.08992 * 109.47055 * 329.99687 * 1 2 3 33 33 H 1.07995 * 120.36277 * 0.02562 * 3 2 1 34 34 H 0.96704 * 113.99403 * 90.00756 * 5 4 3 35 35 H 1.09001 * 109.47121 * 269.97892 * 8 7 6 36 36 H 1.09002 * 109.47253 * 29.97036 * 8 7 6 37 37 H 1.08998 * 109.47597 * 149.97294 * 8 7 6 38 38 H 0.97004 * 120.00032 * 0.02562 * 12 10 9 39 39 H 1.09004 * 109.58215 * 185.10224 * 15 13 12 40 40 H 1.08997 * 109.58679 * 305.52349 * 15 13 12 41 41 H 0.96997 * 120.00348 * 180.02562 * 20 19 17 42 42 H 1.08995 * 109.58686 * 66.17877 * 25 16 15 43 43 H 1.08999 * 109.58892 * 186.61343 * 25 16 15 44 44 H 1.08997 * 109.49894 * 174.58664 * 26 25 16 45 45 H 1.09000 * 109.49775 * 294.68884 * 26 25 16 46 46 H 1.09006 * 109.46612 * 180.02562 * 29 27 26 47 47 H 1.08996 * 109.47030 * 300.06519 * 29 27 26 48 48 H 1.08996 * 109.47283 * 60.06949 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 -0.0052 6 7 4.2548 -0.0065 0.0005 7 6 3.6205 -1.1600 0.0005 8 6 4.4080 -2.4448 0.0011 9 6 2.2256 -1.2044 0.0011 10 6 1.5171 -2.4995 0.0016 11 8 1.2247 -3.0328 -1.0511 12 7 1.1945 -3.0907 1.1690 13 6 0.4910 -4.3756 1.1695 14 1 -0.2022 -4.4112 0.3291 15 6 1.5072 -5.5149 1.0426 16 7 2.3510 -5.5322 2.2453 17 6 3.7159 -5.4955 2.1406 18 1 4.3055 -5.0418 2.9235 19 6 4.3415 -6.0414 1.0282 20 7 3.6729 -6.8384 0.2221 21 14 6.1326 -5.6448 0.6753 22 1 7.0023 -6.6441 1.3461 23 1 6.3693 -5.6866 -0.7901 24 1 6.4496 -4.2882 1.1894 25 6 1.7026 -5.5899 3.5625 26 6 0.6842 -4.4497 3.6612 27 6 -0.2847 -4.5328 2.4794 28 1 -0.7878 -5.4996 2.4897 29 6 -1.3244 -3.4161 2.5932 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8901 0.5137 32 1 -0.3633 0.8899 0.5138 33 1 1.6935 2.1314 0.0004 34 1 4.5071 2.6491 0.8766 35 1 4.5980 -2.7550 -1.0264 36 1 5.3567 -2.2893 0.5149 37 1 3.8392 -3.2195 0.5153 38 1 1.4276 -2.6650 2.0089 39 1 0.9812 -6.4653 0.9518 40 1 2.1291 -5.3535 0.1622 41 1 4.1101 -7.2202 -0.5551 42 1 1.1925 -6.5462 3.6771 43 1 2.4534 -5.4777 4.3446 44 1 0.1282 -4.5383 4.5944 45 1 1.2058 -3.4929 3.6372 46 1 -2.0149 -3.4755 1.7518 47 1 -1.8770 -3.5279 3.5260 48 1 -0.8217 -2.4491 2.5823 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968677305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:07 Heat of formation + Delta-G solvation = -28.319902 kcal Electronic energy + Delta-G solvation = -31042.394632 eV Core-core repulsion = 27097.857427 eV Total energy + Delta-G solvation = -3944.537204 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.85349 -39.42316 -37.78317 -36.91209 -34.31110 -34.13414 -32.87911 -31.60494 -31.04971 -29.23808 -28.09959 -27.59488 -27.19356 -24.19463 -23.68347 -22.19940 -21.26172 -21.12333 -20.67229 -18.71707 -18.46264 -17.61384 -17.14985 -16.73319 -15.78531 -15.29684 -14.98648 -14.53556 -14.09888 -14.07414 -13.88320 -13.67344 -13.58299 -13.31462 -13.28799 -13.13732 -12.96506 -12.71418 -12.58172 -12.12535 -12.06157 -11.94945 -11.75411 -11.63159 -11.51141 -11.37475 -11.13184 -10.92501 -10.66782 -10.55344 -10.24685 -9.97704 -9.82729 -9.67808 -9.56700 -9.51512 -9.21626 -8.72738 -8.49534 -8.42421 -6.64657 -5.79706 -3.24953 0.82301 1.14386 2.99482 3.29130 3.35329 3.43425 3.45473 3.66853 3.72426 4.46682 4.49381 4.54491 4.95246 5.00929 5.13474 5.17287 5.20508 5.30237 5.35335 5.40448 5.42823 5.51887 5.55684 5.67163 5.81138 5.85247 5.89023 5.95899 6.05718 6.08479 6.12446 6.24115 6.26737 6.31194 6.35688 6.41048 6.50453 6.61434 6.72486 6.73148 6.84948 6.95873 7.33088 7.36161 7.64770 7.78066 7.91694 8.01745 8.44934 8.67832 9.19514 9.82327 10.39785 11.27999 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009938 B = 0.005950 C = 0.004256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2816.754794 B = 4704.829317 C = 6577.802125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.006 3.994 3 C -0.203 4.203 4 C 0.325 3.675 5 O -0.483 6.483 6 N -0.508 5.508 7 C 0.206 3.794 8 C -0.125 4.125 9 C -0.185 4.185 10 C 0.571 3.429 11 O -0.533 6.533 12 N -0.689 5.689 13 C 0.124 3.876 14 H 0.077 0.923 15 C 0.161 3.839 16 N -0.587 5.587 17 C -0.254 4.254 18 H 0.063 0.937 19 C 0.012 3.988 20 N -0.896 5.896 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.287 1.287 24 H -0.272 1.272 25 C 0.142 3.858 26 C -0.129 4.129 27 C -0.093 4.093 28 H 0.078 0.922 29 C -0.145 4.145 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.400 0.600 35 H 0.082 0.918 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.396 0.604 39 H 0.026 0.974 40 H 0.097 0.903 41 H 0.255 0.745 42 H 0.018 0.982 43 H 0.053 0.947 44 H 0.053 0.947 45 H 0.053 0.947 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.149 14.065 5.010 17.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.002 4.002 3 C -0.224 4.224 4 C 0.146 3.854 5 O -0.290 6.290 6 N -0.228 5.228 7 C 0.068 3.932 8 C -0.181 4.181 9 C -0.190 4.190 10 C 0.355 3.645 11 O -0.410 6.410 12 N -0.339 5.339 13 C 0.018 3.982 14 H 0.095 0.905 15 C 0.034 3.966 16 N -0.309 5.309 17 C -0.384 4.384 18 H 0.080 0.920 19 C -0.188 4.188 20 N -0.540 5.540 21 Si 0.713 3.287 22 H -0.215 1.215 23 H -0.213 1.213 24 H -0.197 1.197 25 C 0.016 3.984 26 C -0.168 4.168 27 C -0.112 4.112 28 H 0.096 0.904 29 C -0.202 4.202 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.160 0.840 34 H 0.257 0.743 35 H 0.101 0.899 36 H 0.100 0.900 37 H 0.127 0.873 38 H 0.231 0.769 39 H 0.044 0.956 40 H 0.115 0.885 41 H 0.065 0.935 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.427 13.580 3.508 15.870 hybrid contribution 0.428 0.536 0.582 0.900 sum -6.998 14.115 4.090 16.277 Atomic orbital electron populations 1.20899 0.89555 1.03581 1.03636 1.20170 0.96763 0.90951 0.92337 1.21770 0.93686 0.99078 1.07863 1.19261 0.87015 0.85092 0.94048 1.84731 1.76139 1.34187 1.33909 1.67044 1.41934 0.97829 1.15974 1.21262 0.89402 0.93080 0.89438 1.21148 1.01042 0.91866 1.04092 1.20856 0.94935 0.94694 1.08538 1.17684 0.78687 0.83585 0.84566 1.90806 1.54053 1.64843 1.31298 1.45889 1.58189 1.22389 1.07478 1.21874 0.94894 0.84838 0.96602 0.90527 1.21199 0.91353 0.91772 0.92272 1.43954 1.02242 1.85635 0.99107 1.19036 0.81730 1.31652 1.05938 0.91950 1.25026 0.97131 0.96833 0.99776 1.69959 1.36090 1.31622 1.16285 0.86639 0.85748 0.78617 0.77713 1.21539 1.21311 1.19722 1.20933 0.93794 0.94134 0.89554 1.22082 0.97656 1.00713 0.96384 1.21309 0.95445 0.99142 0.95350 0.90355 1.21859 0.98598 0.98794 1.00951 0.89790 0.90560 0.90561 0.84025 0.74268 0.89937 0.90001 0.87277 0.76908 0.95599 0.88458 0.93494 0.96446 0.92830 0.92816 0.92793 0.93074 0.93119 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.27 9.69 36.00 0.35 -0.92 16 2 C 0.01 0.08 5.95 -103.95 -0.62 -0.54 16 3 C -0.20 -2.46 9.73 -39.34 -0.38 -2.85 16 4 C 0.32 4.57 7.74 -16.96 -0.13 4.44 16 5 O -0.48 -5.60 13.55 -18.21 -0.25 -5.85 16 6 N -0.51 -8.64 10.28 -9.20 -0.09 -8.73 16 7 C 0.21 3.67 6.82 -82.19 -0.56 3.11 16 8 C -0.12 -2.41 9.17 36.00 0.33 -2.08 16 9 C -0.18 -3.07 5.65 -104.82 -0.59 -3.66 16 10 C 0.57 10.48 4.29 -12.43 -0.05 10.43 16 11 O -0.53 -11.77 16.77 5.29 0.09 -11.68 16 12 N -0.69 -11.53 4.25 -54.70 -0.23 -11.76 16 13 C 0.12 2.18 2.24 -67.81 -0.15 2.03 16 14 H 0.08 1.41 7.58 -51.93 -0.39 1.01 16 15 C 0.16 3.62 4.88 -3.71 -0.02 3.60 16 16 N -0.59 -13.28 2.91 -172.32 -0.50 -13.79 16 17 C -0.25 -6.42 9.14 -15.06 -0.14 -6.56 16 18 H 0.06 1.57 7.87 -52.49 -0.41 1.16 16 19 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 20 N -0.90 -25.33 11.16 55.49 0.62 -24.71 16 21 Si 0.88 21.05 28.97 -169.99 -4.93 16.13 16 22 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.27 -6.16 7.02 56.52 0.40 -5.77 16 25 C 0.14 2.67 6.52 -3.71 -0.02 2.65 16 26 C -0.13 -1.90 5.20 -26.61 -0.14 -2.04 16 27 C -0.09 -1.35 2.48 -90.57 -0.22 -1.57 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 C -0.14 -1.68 9.05 37.16 0.34 -1.34 16 30 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.85 7.18 -51.93 -0.37 0.48 16 32 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 33 H 0.14 1.28 8.06 -52.49 -0.42 0.85 16 34 H 0.40 2.48 9.06 45.56 0.41 2.89 16 35 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 36 H 0.08 1.54 8.05 -51.93 -0.42 1.12 16 37 H 0.11 2.34 6.62 -51.93 -0.34 2.00 16 38 H 0.40 6.11 6.62 -40.82 -0.27 5.84 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.10 2.59 6.11 -51.93 -0.32 2.27 16 41 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 1.00 7.93 -51.93 -0.41 0.59 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.79 6.40 -51.93 -0.33 0.46 16 46 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.05 0.57 7.54 -51.93 -0.39 0.17 16 LS Contribution 383.18 15.07 5.77 5.77 Total: -1.00 -31.60 383.18 -8.24 -39.84 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -6.62 Total: 9.85 kcal Atomic # 6 Polarization: 7.04 SS G_CDS: -2.10 Total: 4.93 kcal Atomic # 7 Polarization: -58.79 SS G_CDS: -0.21 Total: -58.99 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.16 Total: -17.53 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.93 Total: 16.13 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.60 -8.24 -39.84 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968677305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.518 kcal (2) G-P(sol) polarization free energy of solvation -31.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds