Wall clock time and date at job start Tue Mar 31 2020 17:41:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37997 * 120.81725 * 2 1 4 4 C 1.39126 * 119.26161 * 179.72257 * 3 2 1 5 5 O 1.35504 * 119.52313 * 179.97438 * 4 3 2 6 6 N 1.32436 * 120.95056 * 0.02562 * 4 3 2 7 7 C 1.31631 * 121.79995 * 359.97438 * 6 4 3 8 8 C 1.39567 * 120.62782 * 0.02562 * 7 6 4 9 9 C 1.47616 * 120.50014 * 180.02562 * 8 7 6 10 10 O 1.21576 * 119.99992 * 185.76556 * 9 8 7 11 11 N 1.34778 * 119.99870 * 5.76085 * 9 8 7 12 12 C 1.46499 * 119.99662 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47090 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.44644 * 64.99770 * 13 12 11 15 15 C 1.54866 * 109.45237 * 184.94786 * 13 12 11 16 16 C 1.47099 * 110.31380 * 191.32143 * 15 13 12 17 17 C 1.52565 * 114.31057 * 297.14792 * 16 15 13 18 18 C 1.50880 * 109.35049 * 85.04066 * 17 16 15 19 19 C 1.53943 * 110.09763 * 268.11616 * 18 17 16 20 20 N 1.44580 * 109.44649 * 305.05557 * 13 12 11 21 21 C 1.36932 * 118.64306 * 329.26201 * 20 13 12 22 22 H 1.07995 * 120.00298 * 328.51758 * 21 20 13 23 23 C 1.38812 * 119.99972 * 148.51784 * 21 20 13 24 24 N 1.31621 * 119.99811 * 349.13829 * 23 21 20 25 25 Si 1.86797 * 120.00153 * 169.14032 * 23 21 20 26 26 H 1.48495 * 109.47312 * 89.99834 * 25 23 21 27 27 H 1.48506 * 109.47008 * 209.99853 * 25 23 21 28 28 H 1.48503 * 109.46930 * 329.99863 * 25 23 21 29 29 H 1.09001 * 109.46728 * 96.71279 * 1 2 3 30 30 H 1.09000 * 109.47329 * 216.70479 * 1 2 3 31 31 H 1.08998 * 109.47360 * 336.71408 * 1 2 3 32 32 H 1.07997 * 120.36816 * 359.74317 * 3 2 1 33 33 H 0.96701 * 113.99417 * 90.00228 * 5 4 3 34 34 H 1.08009 * 119.68780 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00474 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47417 * 299.99947 * 12 11 9 37 37 H 1.09001 * 109.46930 * 60.00501 * 12 11 9 38 38 H 1.09004 * 109.32561 * 311.55748 * 15 13 12 39 39 H 1.09001 * 109.32538 * 71.02762 * 15 13 12 40 40 H 1.09003 * 108.50826 * 175.91395 * 16 15 13 41 41 H 1.08997 * 108.41321 * 58.31940 * 16 15 13 42 42 H 1.09003 * 109.48866 * 325.08273 * 17 16 15 43 43 H 1.08997 * 109.51769 * 205.02044 * 17 16 15 44 44 H 1.09001 * 109.36883 * 147.91879 * 18 17 16 45 45 H 1.09003 * 109.25990 * 28.24528 * 18 17 16 46 46 H 1.08992 * 108.94733 * 279.87694 * 19 18 17 47 47 H 1.08996 * 108.87796 * 161.19712 * 19 18 17 48 48 H 0.97010 * 120.00092 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0059 5 8 4.3042 2.3079 0.0054 6 7 4.2547 -0.0065 0.0109 7 6 3.6205 -1.1599 0.0111 8 6 2.2255 -1.2043 0.0054 9 6 1.5172 -2.4994 0.0062 10 8 0.3068 -2.5303 -0.1045 11 7 2.2122 -3.6476 0.1297 12 6 1.5090 -4.9328 0.1310 13 6 2.5228 -6.0686 0.2839 14 1 3.0002 -5.9997 1.2614 15 6 1.7947 -7.4298 0.1602 16 6 2.6875 -8.5254 0.5684 17 6 3.9295 -8.6816 -0.3038 18 6 5.0065 -7.7464 0.1880 19 6 4.9217 -6.4027 -0.5585 20 7 3.5267 -5.9602 -0.7509 21 6 3.1687 -5.4247 -1.9592 22 1 2.1636 -5.5563 -2.3318 23 6 4.0977 -4.7125 -2.7053 24 7 5.2485 -4.3676 -2.1676 25 14 3.7147 -4.2437 -4.4725 26 1 3.0467 -2.9178 -4.4992 27 1 4.9771 -4.1778 -5.2518 28 1 2.8159 -5.2630 -5.0713 29 1 -0.3633 -0.1201 -1.0206 30 1 -0.3634 -0.8239 0.6142 31 1 -0.3634 0.9439 0.4062 32 1 1.6935 2.1314 -0.0042 33 1 4.5036 2.6472 0.8887 34 1 4.1849 -2.0808 0.0149 35 1 3.1778 -3.6229 0.2183 36 1 0.8046 -4.9607 0.9623 37 1 0.9682 -5.0520 -0.8078 38 1 0.9123 -7.4264 0.8001 39 1 1.4864 -7.5813 -0.8742 40 1 2.1252 -9.4587 0.5401 41 1 3.0060 -8.3455 1.5952 42 1 3.6811 -8.4389 -1.3370 43 1 4.2870 -9.7097 -0.2475 44 1 5.9837 -8.1964 0.0126 45 1 4.8740 -7.5754 1.2563 46 1 5.3969 -6.5090 -1.5336 47 1 5.4570 -5.6462 0.0152 48 1 5.8979 -3.8703 -2.6891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969025713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:18 Heat of formation + Delta-G solvation = -24.159316 kcal Electronic energy + Delta-G solvation = -30271.379076 eV Core-core repulsion = 26327.022288 eV Total energy + Delta-G solvation = -3944.356788 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64001 -39.04501 -38.07400 -36.86849 -34.72809 -33.69892 -33.33660 -31.96707 -30.77670 -30.22141 -27.94480 -26.84663 -25.61870 -24.04515 -23.48556 -22.50190 -21.70875 -20.28827 -19.68437 -19.18815 -18.37434 -17.49356 -16.96825 -16.04787 -15.74224 -15.59824 -15.00448 -14.77797 -14.60902 -14.44246 -14.09413 -13.68858 -13.56748 -13.28153 -13.14620 -12.80882 -12.73734 -12.47983 -12.40007 -12.18050 -12.06743 -11.96777 -11.63502 -11.49327 -11.24236 -11.09462 -10.86110 -10.61416 -10.22523 -10.06287 -10.00602 -9.72211 -9.68950 -9.59752 -9.49454 -9.46760 -9.03799 -8.87055 -8.45808 -8.22790 -6.67706 -5.84825 -3.34039 0.73825 1.28184 3.13862 3.34993 3.42998 3.45072 3.62809 3.76990 4.01968 4.45257 4.67370 4.82275 4.97035 5.18467 5.22341 5.30995 5.33559 5.42495 5.47041 5.61962 5.63424 5.71212 5.84980 5.87691 5.92594 5.99122 6.05012 6.11474 6.13478 6.27645 6.36562 6.49679 6.54572 6.56418 6.60198 6.63537 6.69544 6.73969 6.83165 6.97328 7.08089 7.18710 7.39270 7.42694 7.65440 7.80096 7.96269 8.21072 8.42474 8.79526 9.18791 9.81326 10.28185 11.21206 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.004264 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.047751 B = 6565.585674 C = 7274.489538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.027 3.973 3 C -0.206 4.206 4 C 0.326 3.674 5 O -0.483 6.483 6 N -0.509 5.509 7 C 0.177 3.823 8 C -0.195 4.195 9 C 0.560 3.440 10 O -0.554 6.554 11 N -0.681 5.681 12 C 0.131 3.869 13 C 0.173 3.827 14 H 0.045 0.955 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.181 3.819 20 N -0.584 5.584 21 C -0.252 4.252 22 H 0.060 0.940 23 C 0.017 3.983 24 N -0.900 5.900 25 Si 0.890 3.110 26 H -0.288 1.288 27 H -0.290 1.290 28 H -0.281 1.281 29 H 0.081 0.919 30 H 0.102 0.898 31 H 0.059 0.941 32 H 0.142 0.858 33 H 0.399 0.601 34 H 0.175 0.825 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.048 0.952 39 H 0.063 0.937 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.073 0.927 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.025 0.975 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 3.991 8.902 10.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.019 3.981 3 C -0.227 4.227 4 C 0.148 3.852 5 O -0.290 6.290 6 N -0.227 5.227 7 C 0.019 3.981 8 C -0.200 4.200 9 C 0.346 3.654 10 O -0.436 6.436 11 N -0.330 5.330 12 C 0.006 3.994 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.177 4.177 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.057 3.943 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.078 0.922 23 C -0.182 4.182 24 N -0.544 5.544 25 Si 0.720 3.280 26 H -0.215 1.215 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.100 0.900 30 H 0.120 0.880 31 H 0.078 0.922 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.192 0.808 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.088 0.912 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.090 0.910 47 H 0.043 0.957 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.985 4.051 8.168 9.950 hybrid contribution -0.257 0.381 -0.732 0.864 sum -4.242 4.431 7.436 9.639 Atomic orbital electron populations 1.21067 0.88961 1.03143 1.04305 1.20337 0.97512 0.90733 0.89523 1.21894 0.93702 0.99298 1.07795 1.19396 0.87045 0.85324 0.93478 1.84728 1.76159 1.34314 1.33780 1.67209 1.41972 0.98171 1.15378 1.23034 0.90581 0.95410 0.89088 1.21027 0.95164 0.94894 1.08943 1.17749 0.86791 0.83513 0.77372 1.90662 1.13644 1.87370 1.51890 1.45630 1.11681 1.04957 1.70770 1.21507 0.94537 0.82317 1.01022 1.20529 0.89577 0.91095 0.92436 0.93731 1.21371 0.97648 0.97162 1.01493 1.20288 0.96792 0.97712 0.99041 1.20946 0.95067 0.97179 1.01222 1.22079 0.97521 0.99033 0.99616 1.20998 0.84738 0.89392 0.99213 1.43698 1.05817 1.70518 1.10535 1.18964 0.97467 1.26671 0.95104 0.92190 1.24989 0.97334 0.97471 0.98413 1.69962 1.08021 1.40975 1.35477 0.86499 0.77207 0.78570 0.85743 1.21516 1.21655 1.20604 0.90007 0.88006 0.92247 0.84045 0.74279 0.80829 0.75217 0.93010 0.91153 0.93336 0.91834 0.94120 0.93531 0.90790 0.94248 0.93287 0.93822 0.90975 0.95667 0.93541 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.59 8.83 36.01 0.32 -1.27 16 2 C 0.03 0.41 5.95 -103.96 -0.62 -0.21 16 3 C -0.21 -2.78 9.70 -39.34 -0.38 -3.16 16 4 C 0.33 4.88 7.74 -16.96 -0.13 4.75 16 5 O -0.48 -6.02 13.55 -18.21 -0.25 -6.27 16 6 N -0.51 -8.88 10.37 -12.96 -0.13 -9.01 16 7 C 0.18 3.12 10.69 -17.14 -0.18 2.94 16 8 C -0.20 -3.38 5.89 -104.82 -0.62 -3.99 16 9 C 0.56 10.54 7.72 -12.43 -0.10 10.45 16 10 O -0.55 -11.18 13.50 5.30 0.07 -11.11 16 11 N -0.68 -12.69 4.67 -61.32 -0.29 -12.97 16 12 C 0.13 2.36 4.52 -4.04 -0.02 2.35 16 13 C 0.17 3.08 2.19 -67.97 -0.15 2.93 16 14 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 15 C -0.14 -2.18 5.06 -28.58 -0.14 -2.33 16 16 C -0.10 -1.52 5.16 -29.79 -0.15 -1.67 16 17 C -0.11 -1.75 5.51 -28.02 -0.15 -1.90 16 18 C -0.14 -2.46 5.71 -27.30 -0.16 -2.62 16 19 C 0.18 3.77 4.64 -2.94 -0.01 3.76 16 20 N -0.58 -12.10 1.76 -164.46 -0.29 -12.39 16 21 C -0.25 -5.98 7.52 -15.06 -0.11 -6.09 16 22 H 0.06 1.50 6.86 -52.49 -0.36 1.14 16 23 C 0.02 0.43 4.96 -17.43 -0.09 0.34 16 24 N -0.90 -22.97 11.07 55.49 0.61 -22.35 16 25 Si 0.89 21.23 29.57 -169.99 -5.03 16.21 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.07 7.11 56.52 0.40 -6.66 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.10 1.52 5.97 -51.93 -0.31 1.21 16 31 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 32 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 33 H 0.40 2.70 9.06 45.56 0.41 3.11 16 34 H 0.17 3.17 6.45 -52.48 -0.34 2.83 16 35 H 0.41 7.87 6.16 -40.82 -0.25 7.62 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.42 6.91 -51.93 -0.36 1.06 16 38 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 39 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 42 H 0.07 1.40 7.48 -51.93 -0.39 1.02 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 46 H 0.07 1.72 6.57 -51.93 -0.34 1.38 16 47 H 0.03 0.56 7.98 -51.93 -0.41 0.15 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 375.16 15.07 5.65 5.65 Total: -1.00 -28.07 375.16 -8.81 -36.88 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -6.46 Total: 11.10 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -2.70 Total: 4.27 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -0.10 Total: -56.73 kcal Atomic # 8 Polarization: -17.20 SS G_CDS: -0.18 Total: -17.37 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.03 Total: 16.21 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.07 -8.81 -36.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969025713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.720 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds