Wall clock time and date at job start Tue Mar 31 2020 17:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37997 * 120.81725 * 2 1 4 4 C 1.39126 * 119.26161 * 179.72257 * 3 2 1 5 5 O 1.35504 * 119.52313 * 179.97438 * 4 3 2 6 6 N 1.32436 * 120.95056 * 0.02562 * 4 3 2 7 7 C 1.31631 * 121.79995 * 359.97438 * 6 4 3 8 8 C 1.39567 * 120.62782 * 0.02562 * 7 6 4 9 9 C 1.47616 * 120.50014 * 180.02562 * 8 7 6 10 10 O 1.21576 * 119.99992 * 185.76556 * 9 8 7 11 11 N 1.34778 * 119.99870 * 5.76085 * 9 8 7 12 12 C 1.46499 * 119.99662 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47090 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.44644 * 64.99770 * 13 12 11 15 15 C 1.54866 * 109.45237 * 184.94786 * 13 12 11 16 16 C 1.47099 * 110.31380 * 191.32143 * 15 13 12 17 17 C 1.52565 * 114.31057 * 297.14792 * 16 15 13 18 18 C 1.50880 * 109.35049 * 85.04066 * 17 16 15 19 19 C 1.53943 * 110.09763 * 268.11616 * 18 17 16 20 20 N 1.44580 * 109.44649 * 305.05557 * 13 12 11 21 21 C 1.36932 * 118.64306 * 329.26201 * 20 13 12 22 22 H 1.07995 * 120.00298 * 328.51758 * 21 20 13 23 23 C 1.38812 * 119.99972 * 148.51784 * 21 20 13 24 24 N 1.31621 * 119.99811 * 349.13829 * 23 21 20 25 25 Si 1.86797 * 120.00153 * 169.14032 * 23 21 20 26 26 H 1.48495 * 109.47312 * 89.99834 * 25 23 21 27 27 H 1.48506 * 109.47008 * 209.99853 * 25 23 21 28 28 H 1.48503 * 109.46930 * 329.99863 * 25 23 21 29 29 H 1.09001 * 109.46728 * 96.71279 * 1 2 3 30 30 H 1.09000 * 109.47329 * 216.70479 * 1 2 3 31 31 H 1.08998 * 109.47360 * 336.71408 * 1 2 3 32 32 H 1.07997 * 120.36816 * 359.74317 * 3 2 1 33 33 H 0.96701 * 113.99417 * 90.00228 * 5 4 3 34 34 H 1.08009 * 119.68780 * 179.97438 * 7 6 4 35 35 H 0.96999 * 120.00474 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47417 * 299.99947 * 12 11 9 37 37 H 1.09001 * 109.46930 * 60.00501 * 12 11 9 38 38 H 1.09004 * 109.32561 * 311.55748 * 15 13 12 39 39 H 1.09001 * 109.32538 * 71.02762 * 15 13 12 40 40 H 1.09003 * 108.50826 * 175.91395 * 16 15 13 41 41 H 1.08997 * 108.41321 * 58.31940 * 16 15 13 42 42 H 1.09003 * 109.48866 * 325.08273 * 17 16 15 43 43 H 1.08997 * 109.51769 * 205.02044 * 17 16 15 44 44 H 1.09001 * 109.36883 * 147.91879 * 18 17 16 45 45 H 1.09003 * 109.25990 * 28.24528 * 18 17 16 46 46 H 1.08992 * 108.94733 * 279.87694 * 19 18 17 47 47 H 1.08996 * 108.87796 * 161.19712 * 19 18 17 48 48 H 0.97010 * 120.00092 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1474 0.0059 5 8 4.3042 2.3079 0.0054 6 7 4.2547 -0.0065 0.0109 7 6 3.6205 -1.1599 0.0111 8 6 2.2255 -1.2043 0.0054 9 6 1.5172 -2.4994 0.0062 10 8 0.3068 -2.5303 -0.1045 11 7 2.2122 -3.6476 0.1297 12 6 1.5090 -4.9328 0.1310 13 6 2.5228 -6.0686 0.2839 14 1 3.0002 -5.9997 1.2614 15 6 1.7947 -7.4298 0.1602 16 6 2.6875 -8.5254 0.5684 17 6 3.9295 -8.6816 -0.3038 18 6 5.0065 -7.7464 0.1880 19 6 4.9217 -6.4027 -0.5585 20 7 3.5267 -5.9602 -0.7509 21 6 3.1687 -5.4247 -1.9592 22 1 2.1636 -5.5563 -2.3318 23 6 4.0977 -4.7125 -2.7053 24 7 5.2485 -4.3676 -2.1676 25 14 3.7147 -4.2437 -4.4725 26 1 3.0467 -2.9178 -4.4992 27 1 4.9771 -4.1778 -5.2518 28 1 2.8159 -5.2630 -5.0713 29 1 -0.3633 -0.1201 -1.0206 30 1 -0.3634 -0.8239 0.6142 31 1 -0.3634 0.9439 0.4062 32 1 1.6935 2.1314 -0.0042 33 1 4.5036 2.6472 0.8887 34 1 4.1849 -2.0808 0.0149 35 1 3.1778 -3.6229 0.2183 36 1 0.8046 -4.9607 0.9623 37 1 0.9682 -5.0520 -0.8078 38 1 0.9123 -7.4264 0.8001 39 1 1.4864 -7.5813 -0.8742 40 1 2.1252 -9.4587 0.5401 41 1 3.0060 -8.3455 1.5952 42 1 3.6811 -8.4389 -1.3370 43 1 4.2870 -9.7097 -0.2475 44 1 5.9837 -8.1964 0.0126 45 1 4.8740 -7.5754 1.2563 46 1 5.3969 -6.5090 -1.5336 47 1 5.4570 -5.6462 0.0152 48 1 5.8979 -3.8703 -2.6891 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969025713.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:17 Heat of formation + Delta-G solvation = -43.345116 kcal Electronic energy + Delta-G solvation = -30272.211034 eV Core-core repulsion = 26327.022288 eV Total energy + Delta-G solvation = -3945.188746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.89576 -40.45219 -39.51741 -37.99851 -36.14661 -35.26869 -34.70387 -33.41075 -32.46852 -31.52804 -29.13257 -28.36628 -27.17432 -25.34207 -25.16390 -23.84390 -22.97721 -21.72457 -21.07422 -20.75789 -19.46065 -18.94273 -18.26749 -17.69189 -17.21966 -16.88592 -16.49504 -16.25625 -16.02421 -15.89648 -15.60374 -15.18770 -15.02327 -14.61792 -14.54547 -14.19360 -13.94990 -13.71583 -13.64002 -13.56276 -13.36664 -13.28808 -13.11900 -12.88886 -12.85298 -12.72413 -12.63404 -12.36811 -12.01266 -11.53035 -11.36986 -11.28979 -11.17736 -11.05818 -10.84991 -10.66925 -10.39192 -10.36624 -10.11720 -9.71107 -8.47446 -7.78195 -5.25136 -0.49249 0.08324 1.37202 1.44669 1.46723 1.80469 2.36169 2.51130 2.52321 2.71192 3.38019 3.49095 3.63292 3.63826 3.74541 3.98467 4.07187 4.11592 4.23063 4.30342 4.45370 4.47793 4.54119 4.61971 4.66206 4.70990 4.71949 4.78448 4.86205 5.03922 5.04798 5.12163 5.16548 5.27446 5.30002 5.33870 5.41659 5.45116 5.48430 5.58709 5.67886 5.71562 5.79146 5.82683 5.93852 6.50460 6.54064 6.69684 6.78906 7.29217 7.30565 8.02483 8.42051 9.23829 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012304 B = 0.004264 C = 0.003848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.047751 B = 6565.585674 C = 7274.489538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.024 3.976 3 C -0.189 4.189 4 C 0.328 3.672 5 O -0.485 6.485 6 N -0.537 5.537 7 C 0.170 3.830 8 C -0.214 4.214 9 C 0.557 3.443 10 O -0.571 6.571 11 N -0.685 5.685 12 C 0.134 3.866 13 C 0.172 3.828 14 H 0.057 0.943 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.133 4.133 19 C 0.190 3.810 20 N -0.587 5.587 21 C -0.230 4.230 22 H 0.047 0.953 23 C -0.019 4.019 24 N -0.912 5.912 25 Si 0.922 3.078 26 H -0.303 1.303 27 H -0.297 1.297 28 H -0.279 1.279 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.182 0.818 33 H 0.425 0.575 34 H 0.157 0.843 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.074 0.926 39 H 0.042 0.958 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.004 0.996 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.309 4.343 10.634 12.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.015 3.985 3 C -0.210 4.210 4 C 0.150 3.850 5 O -0.296 6.296 6 N -0.257 5.257 7 C 0.012 3.988 8 C -0.220 4.220 9 C 0.344 3.656 10 O -0.454 6.454 11 N -0.333 5.333 12 C 0.010 3.990 13 C 0.064 3.936 14 H 0.075 0.925 15 C -0.168 4.168 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.172 4.172 19 C 0.066 3.934 20 N -0.310 5.310 21 C -0.361 4.361 22 H 0.065 0.935 23 C -0.216 4.216 24 N -0.558 5.558 25 Si 0.754 3.246 26 H -0.231 1.231 27 H -0.223 1.223 28 H -0.205 1.205 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.199 0.801 33 H 0.287 0.713 34 H 0.174 0.826 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.054 0.946 47 H 0.022 0.978 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.102 4.390 9.930 11.996 hybrid contribution 0.076 0.354 -1.235 1.287 sum -5.026 4.745 8.695 11.107 Atomic orbital electron populations 1.21034 0.87594 1.04542 1.03719 1.20640 0.98515 0.90460 0.88842 1.22198 0.93004 1.00174 1.05619 1.19640 0.87899 0.85212 0.92299 1.84680 1.75900 1.32956 1.36088 1.67163 1.42948 0.98909 1.16636 1.22732 0.90689 0.95220 0.90171 1.20974 0.95064 0.95071 1.10842 1.18032 0.86690 0.84098 0.76805 1.90645 1.14240 1.87743 1.52801 1.45702 1.11473 1.05308 1.70806 1.21506 0.94731 0.82322 1.00477 1.20712 0.88929 0.92126 0.91841 0.92491 1.21280 0.98632 0.96011 1.00875 1.20275 0.96086 0.98148 0.99265 1.20906 0.95561 0.98083 0.99559 1.21948 0.98610 0.96772 0.99837 1.20764 0.84167 0.91081 0.97420 1.43738 1.06384 1.70423 1.10445 1.18887 0.96379 1.24928 0.95915 0.93523 1.25273 0.97842 0.98718 0.99741 1.70051 1.08287 1.42109 1.35382 0.85986 0.76418 0.77522 0.84663 1.23078 1.22316 1.20477 0.90705 0.89743 0.88420 0.80111 0.71277 0.82618 0.75657 0.91007 0.93645 0.90750 0.93964 0.92029 0.92018 0.93947 0.92003 0.92268 0.92185 0.94583 0.97797 0.94595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.82 8.83 71.24 0.63 -2.19 16 2 C 0.02 0.68 5.95 -19.43 -0.12 0.57 16 3 C -0.19 -4.60 9.70 22.43 0.22 -4.38 16 4 C 0.33 9.25 7.74 84.82 0.66 9.91 16 5 O -0.49 -10.88 13.55 -88.06 -1.19 -12.07 16 6 N -0.54 -18.79 10.37 -307.79 -3.19 -21.98 16 7 C 0.17 6.19 10.69 85.04 0.91 7.10 16 8 C -0.21 -7.50 5.89 -19.99 -0.12 -7.62 16 9 C 0.56 21.40 7.72 86.72 0.67 22.07 16 10 O -0.57 -23.29 13.50 -3.96 -0.05 -23.34 16 11 N -0.68 -26.12 4.67 -466.19 -2.18 -28.29 16 12 C 0.13 4.84 4.52 86.38 0.39 5.23 16 13 C 0.17 5.98 2.19 45.99 0.10 6.08 16 14 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 15 C -0.13 -3.84 5.06 29.40 0.15 -3.70 16 16 C -0.10 -2.71 5.16 28.61 0.15 -2.56 16 17 C -0.10 -3.18 5.51 29.76 0.16 -3.02 16 18 C -0.13 -4.36 5.71 30.22 0.17 -4.18 16 19 C 0.19 8.06 4.64 86.48 0.40 8.46 16 20 N -0.59 -24.71 1.76 -674.24 -1.19 -25.90 16 21 C -0.23 -11.22 7.52 84.03 0.63 -10.59 16 22 H 0.05 2.41 6.86 -2.91 -0.02 2.39 16 23 C -0.02 -0.97 4.96 84.86 0.42 -0.55 16 24 N -0.91 -48.53 11.07 21.65 0.24 -48.29 16 25 Si 0.92 44.96 29.57 68.60 2.03 46.99 16 26 H -0.30 -15.36 7.11 99.48 0.71 -14.66 16 27 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 28 H -0.28 -13.39 7.11 99.48 0.71 -12.69 16 29 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.44 5.97 -2.39 -0.01 2.43 16 31 H 0.10 1.66 8.06 -2.39 -0.02 1.64 16 32 H 0.18 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.42 4.51 9.06 -74.06 -0.67 3.84 16 34 H 0.16 6.09 6.45 -2.91 -0.02 6.07 16 35 H 0.41 16.22 6.16 -92.71 -0.57 15.65 16 36 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.05 1.87 6.91 -2.39 -0.02 1.85 16 38 H 0.07 1.89 8.11 -2.39 -0.02 1.87 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.53 7.35 -2.39 -0.02 1.51 16 42 H 0.04 1.58 7.48 -2.39 -0.02 1.56 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.06 1.79 7.31 -2.39 -0.02 1.78 16 46 H 0.04 1.77 6.57 -2.39 -0.02 1.76 16 47 H 0.00 0.18 7.98 -2.39 -0.02 0.16 16 48 H 0.24 13.25 8.31 -92.70 -0.77 12.48 16 Total: -1.00 -62.90 375.16 -0.36 -63.25 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: -0.25 Total: 29.01 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 5.43 Total: 20.63 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -6.32 Total: -124.46 kcal Atomic # 8 Polarization: -34.17 SS G_CDS: -1.25 Total: -35.42 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -62.90 -0.36 -63.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969025713.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.908 kcal (2) G-P(sol) polarization free energy of solvation -62.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds