Wall clock time and date at job start Tue Mar 31 2020 17:41:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38001 * 120.82313 * 2 1 4 4 C 1.39125 * 119.26460 * 180.27346 * 3 2 1 5 5 O 1.35503 * 119.52123 * 179.72426 * 4 3 2 6 6 N 1.32433 * 120.95307 * 359.70294 * 4 3 2 7 7 C 1.31644 * 121.79606 * 0.02562 * 6 4 3 8 8 C 1.39562 * 120.62627 * 359.97438 * 7 6 4 9 9 C 1.47611 * 120.49783 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00198 * 174.32680 * 9 8 7 11 11 N 1.34780 * 120.00103 * 354.32463 * 9 8 7 12 12 C 1.46501 * 119.99763 * 180.02562 * 11 9 8 13 13 C 1.53010 * 109.46646 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.44784 * 295.04858 * 13 12 11 15 15 C 1.54864 * 109.42555 * 175.12047 * 13 12 11 16 16 C 1.47086 * 110.32187 * 168.70704 * 15 13 12 17 17 C 1.52571 * 114.32637 * 62.79730 * 16 15 13 18 18 C 1.50873 * 109.35951 * 274.98735 * 17 16 15 19 19 C 1.54300 * 110.23699 * 91.79852 * 18 17 16 20 20 N 1.44570 * 109.44948 * 54.99831 * 13 12 11 21 21 C 1.36935 * 118.64545 * 30.72301 * 20 13 12 22 22 H 1.08001 * 120.00162 * 27.91487 * 21 20 13 23 23 C 1.38815 * 120.00239 * 207.91836 * 21 20 13 24 24 N 1.31621 * 119.99731 * 16.17757 * 23 21 20 25 25 Si 1.86795 * 120.00321 * 196.17141 * 23 21 20 26 26 H 1.48505 * 109.47353 * 265.01264 * 25 23 21 27 27 H 1.48503 * 109.46942 * 145.01348 * 25 23 21 28 28 H 1.48494 * 109.47017 * 25.01331 * 25 23 21 29 29 H 1.09007 * 109.47131 * 263.69654 * 1 2 3 30 30 H 1.08997 * 109.47429 * 23.69147 * 1 2 3 31 31 H 1.09000 * 109.47541 * 143.69459 * 1 2 3 32 32 H 1.07999 * 120.36756 * 359.97438 * 3 2 1 33 33 H 0.96700 * 113.99650 * 269.97383 * 5 4 3 34 34 H 1.07998 * 119.68109 * 180.02562 * 7 6 4 35 35 H 0.96997 * 119.99867 * 0.02562 * 11 9 8 36 36 H 1.08993 * 109.47353 * 60.00128 * 12 11 9 37 37 H 1.09005 * 109.47400 * 299.99488 * 12 11 9 38 38 H 1.09009 * 109.32722 * 288.96551 * 15 13 12 39 39 H 1.08995 * 109.33087 * 48.61522 * 15 13 12 40 40 H 1.09005 * 108.51596 * 184.05468 * 16 15 13 41 41 H 1.09004 * 108.51456 * 301.70519 * 16 15 13 42 42 H 1.08994 * 109.49006 * 34.95742 * 17 16 15 43 43 H 1.09000 * 109.48852 * 155.02192 * 17 16 15 44 44 H 1.08999 * 109.36842 * 212.07904 * 18 17 16 45 45 H 1.08997 * 109.37170 * 331.69776 * 18 17 16 46 46 H 1.08996 * 109.14298 * 199.01301 * 19 18 17 47 47 H 1.09004 * 108.95707 * 80.26704 * 19 18 17 48 48 H 0.96999 * 120.00079 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3043 2.3078 -0.0115 6 7 4.2548 -0.0066 -0.0054 7 6 3.6204 -1.1601 0.0000 8 6 2.2255 -1.2043 0.0060 9 6 1.5171 -2.4993 0.0114 10 8 0.3066 -2.5296 0.1207 11 7 2.2122 -3.6482 -0.1049 12 6 1.5090 -4.9334 -0.1000 13 6 2.5231 -6.0701 -0.2441 14 1 3.0031 -6.0066 -1.2207 15 6 1.7939 -7.4303 -0.1155 16 6 2.6872 -8.5285 -0.5147 17 6 3.9270 -8.6802 0.3615 18 6 5.0057 -7.7482 -0.1325 19 6 4.9208 -6.3953 0.6046 20 7 3.5241 -5.9564 0.7927 21 6 3.1631 -5.4142 1.9972 22 1 2.1424 -5.4938 2.3410 23 6 4.1089 -4.7620 2.7762 24 7 5.2513 -4.3824 2.2440 25 14 3.7605 -4.4230 4.5798 26 1 3.2105 -3.0516 4.7285 27 1 5.0204 -4.5381 5.3575 28 1 2.7737 -5.4098 5.0873 29 1 -0.3634 -0.1128 1.0215 30 1 -0.3634 0.9410 -0.4129 31 1 -0.3634 -0.8281 -0.6085 32 1 1.6936 2.1314 -0.0004 33 1 4.5039 2.6423 -0.8966 34 1 4.1849 -2.0808 0.0005 35 1 3.1779 -3.6241 -0.1917 36 1 0.8056 -4.9659 -0.9320 37 1 0.9669 -5.0475 0.8388 38 1 1.4825 -7.5763 0.9189 39 1 0.9151 -7.4309 -0.7603 40 1 2.1244 -9.4615 -0.4827 41 1 3.0107 -8.3558 -1.5412 42 1 3.6761 -8.4321 1.3927 43 1 4.2841 -9.7089 0.3112 44 1 5.9822 -8.1976 0.0479 45 1 4.8783 -7.5826 -1.2023 46 1 5.4545 -5.6400 0.0279 47 1 5.3955 -6.4936 1.5809 48 1 5.9125 -3.9270 2.7885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000969025715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:22 Heat of formation + Delta-G solvation = -23.027969 kcal Electronic energy + Delta-G solvation = -30236.054691 eV Core-core repulsion = 26291.746963 eV Total energy + Delta-G solvation = -3944.307729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.64212 -39.05122 -38.07706 -36.86948 -34.73061 -33.70801 -33.34759 -31.96714 -30.76692 -30.22597 -27.94696 -26.84886 -25.62976 -24.04925 -23.48962 -22.50715 -21.71466 -20.29131 -19.68013 -19.20658 -18.37467 -17.50134 -16.97131 -16.05241 -15.74373 -15.60769 -15.00898 -14.77131 -14.60993 -14.44271 -14.08982 -13.69277 -13.57585 -13.28700 -13.15684 -12.81373 -12.74218 -12.48181 -12.40140 -12.18458 -12.08665 -11.97003 -11.63649 -11.49692 -11.24285 -11.11736 -10.84586 -10.61457 -10.22559 -10.04917 -10.00890 -9.73104 -9.69928 -9.58200 -9.50806 -9.46905 -9.04322 -8.87110 -8.44175 -8.23562 -6.73665 -5.85434 -3.29079 0.73643 1.28025 3.13446 3.35164 3.44147 3.45866 3.62735 3.76228 4.01632 4.46130 4.67224 4.82069 4.96845 5.17123 5.22067 5.30788 5.32945 5.42010 5.46198 5.61785 5.63189 5.71013 5.84612 5.86800 5.92414 5.98755 6.04083 6.10786 6.12671 6.26819 6.36119 6.49408 6.53750 6.56146 6.59246 6.63097 6.68455 6.73367 6.82217 6.96313 7.07718 7.17836 7.37817 7.42678 7.63389 7.80569 7.96158 8.20068 8.39742 8.78701 9.17612 9.82069 10.27125 11.21140 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004240 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.576188 B = 6601.498632 C = 7333.490507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.027 3.973 3 C -0.206 4.206 4 C 0.326 3.674 5 O -0.483 6.483 6 N -0.509 5.509 7 C 0.178 3.822 8 C -0.195 4.195 9 C 0.560 3.440 10 O -0.554 6.554 11 N -0.682 5.682 12 C 0.130 3.870 13 C 0.173 3.827 14 H 0.045 0.955 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.106 4.106 18 C -0.143 4.143 19 C 0.180 3.820 20 N -0.584 5.584 21 C -0.252 4.252 22 H 0.063 0.937 23 C 0.014 3.986 24 N -0.899 5.899 25 Si 0.889 3.111 26 H -0.290 1.290 27 H -0.290 1.290 28 H -0.280 1.280 29 H 0.082 0.918 30 H 0.059 0.941 31 H 0.101 0.899 32 H 0.142 0.858 33 H 0.400 0.600 34 H 0.175 0.825 35 H 0.410 0.590 36 H 0.052 0.948 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.048 0.952 40 H 0.040 0.960 41 H 0.046 0.954 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.048 0.952 45 H 0.043 0.957 46 H 0.025 0.975 47 H 0.073 0.927 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.220 3.965 -9.064 10.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.019 3.981 3 C -0.227 4.227 4 C 0.148 3.852 5 O -0.290 6.290 6 N -0.227 5.227 7 C 0.019 3.981 8 C -0.200 4.200 9 C 0.346 3.654 10 O -0.436 6.436 11 N -0.331 5.331 12 C 0.005 3.995 13 C 0.064 3.936 14 H 0.063 0.937 15 C -0.176 4.176 16 C -0.138 4.138 17 C -0.144 4.144 18 C -0.182 4.182 19 C 0.055 3.945 20 N -0.306 5.306 21 C -0.382 4.382 22 H 0.080 0.920 23 C -0.185 4.185 24 N -0.543 5.543 25 Si 0.719 3.281 26 H -0.217 1.217 27 H -0.217 1.217 28 H -0.206 1.206 29 H 0.100 0.900 30 H 0.078 0.922 31 H 0.120 0.880 32 H 0.160 0.840 33 H 0.257 0.743 34 H 0.192 0.808 35 H 0.248 0.752 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.065 0.935 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.043 0.957 47 H 0.092 0.908 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.006 4.020 -8.329 10.078 hybrid contribution -0.226 0.312 0.747 0.841 sum -4.232 4.332 -7.582 9.703 Atomic orbital electron populations 1.21065 0.88964 1.03175 1.04275 1.20335 0.97504 0.90730 0.89534 1.21891 0.93703 0.99296 1.07792 1.19394 0.87045 0.85310 0.93479 1.84725 1.76158 1.34375 1.33732 1.67213 1.41969 0.98168 1.15379 1.23027 0.90570 0.95407 0.89071 1.21018 0.95157 0.94878 1.08960 1.17752 0.86791 0.83510 0.77343 1.90665 1.13633 1.87392 1.51865 1.45631 1.11651 1.04931 1.70866 1.21527 0.94572 0.82330 1.01057 1.20518 0.89586 0.91147 0.92388 0.93720 1.21367 0.97657 0.97103 1.01517 1.20291 0.96795 0.97722 0.99037 1.20939 0.95063 0.97174 1.01229 1.22115 0.97529 0.98967 0.99585 1.21078 0.84611 0.89368 0.99413 1.43731 1.05802 1.70218 1.10830 1.19000 0.95684 1.28796 0.94678 0.91964 1.24884 0.97415 0.97826 0.98355 1.69997 1.08296 1.41528 1.34505 0.86497 0.77182 0.78123 0.86318 1.21667 1.21655 1.20570 0.89997 0.92249 0.88017 0.84047 0.74275 0.80846 0.75235 0.92969 0.91143 0.91773 0.93327 0.94104 0.93545 0.90756 0.94231 0.93296 0.93833 0.95677 0.90837 0.93585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.58 8.83 36.00 0.32 -1.26 16 2 C 0.03 0.41 5.95 -103.96 -0.62 -0.21 16 3 C -0.21 -2.76 9.70 -39.34 -0.38 -3.14 16 4 C 0.33 4.86 7.74 -16.96 -0.13 4.73 16 5 O -0.48 -6.00 13.55 -18.20 -0.25 -6.25 16 6 N -0.51 -8.84 10.37 -12.96 -0.13 -8.98 16 7 C 0.18 3.11 10.69 -17.14 -0.18 2.93 16 8 C -0.19 -3.35 5.89 -104.83 -0.62 -3.97 16 9 C 0.56 10.49 7.72 -12.43 -0.10 10.39 16 10 O -0.55 -11.13 13.50 5.29 0.07 -11.06 16 11 N -0.68 -12.63 4.67 -61.32 -0.29 -12.91 16 12 C 0.13 2.34 4.53 -4.04 -0.02 2.32 16 13 C 0.17 3.07 2.19 -67.97 -0.15 2.92 16 14 H 0.04 0.78 8.06 -51.93 -0.42 0.36 16 15 C -0.14 -2.17 5.06 -28.59 -0.14 -2.32 16 16 C -0.10 -1.52 5.16 -29.79 -0.15 -1.67 16 17 C -0.11 -1.74 5.51 -28.02 -0.15 -1.90 16 18 C -0.14 -2.45 5.71 -27.12 -0.15 -2.60 16 19 C 0.18 3.74 4.70 -2.76 -0.01 3.73 16 20 N -0.58 -12.09 1.77 -164.25 -0.29 -12.38 16 21 C -0.25 -5.97 7.63 -15.06 -0.11 -6.09 16 22 H 0.06 1.55 6.73 -52.49 -0.35 1.20 16 23 C 0.01 0.36 4.84 -17.43 -0.08 0.27 16 24 N -0.90 -23.01 11.13 55.49 0.62 -22.40 16 25 Si 0.89 21.20 29.58 -169.99 -5.03 16.18 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 27 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 28 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 29 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 31 H 0.10 1.51 5.97 -51.93 -0.31 1.20 16 32 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 33 H 0.40 2.69 9.06 45.56 0.41 3.10 16 34 H 0.17 3.14 6.45 -52.49 -0.34 2.80 16 35 H 0.41 7.82 6.17 -40.82 -0.25 7.57 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 1.42 6.83 -51.93 -0.35 1.07 16 38 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 39 H 0.05 0.69 8.11 -51.93 -0.42 0.27 16 40 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.05 0.67 7.35 -51.93 -0.38 0.29 16 42 H 0.07 1.41 7.49 -51.93 -0.39 1.02 16 43 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.04 0.71 7.31 -51.93 -0.38 0.33 16 46 H 0.03 0.56 8.02 -51.93 -0.42 0.14 16 47 H 0.07 1.76 6.44 -51.93 -0.33 1.42 16 48 H 0.25 6.60 8.31 -40.82 -0.34 6.26 16 LS Contribution 375.01 15.07 5.65 5.65 Total: -1.00 -28.15 375.01 -8.79 -36.94 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -6.45 Total: 11.07 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -2.70 Total: 4.13 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: -0.09 Total: -56.67 kcal Atomic # 8 Polarization: -17.13 SS G_CDS: -0.18 Total: -17.30 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -28.15 -8.79 -36.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969025715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.914 kcal (2) G-P(sol) polarization free energy of solvation -28.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds