Wall clock time and date at job start Tue Mar 31 2020 17:41:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38001 * 120.82313 * 2 1 4 4 C 1.39125 * 119.26460 * 180.27346 * 3 2 1 5 5 O 1.35503 * 119.52123 * 179.72426 * 4 3 2 6 6 N 1.32433 * 120.95307 * 359.70294 * 4 3 2 7 7 C 1.31644 * 121.79606 * 0.02562 * 6 4 3 8 8 C 1.39562 * 120.62627 * 359.97438 * 7 6 4 9 9 C 1.47611 * 120.49783 * 179.97438 * 8 7 6 10 10 O 1.21585 * 120.00198 * 174.32680 * 9 8 7 11 11 N 1.34780 * 120.00103 * 354.32463 * 9 8 7 12 12 C 1.46501 * 119.99763 * 180.02562 * 11 9 8 13 13 C 1.53010 * 109.46646 * 180.02562 * 12 11 9 14 14 H 1.09000 * 109.44784 * 295.04858 * 13 12 11 15 15 C 1.54864 * 109.42555 * 175.12047 * 13 12 11 16 16 C 1.47086 * 110.32187 * 168.70704 * 15 13 12 17 17 C 1.52571 * 114.32637 * 62.79730 * 16 15 13 18 18 C 1.50873 * 109.35951 * 274.98735 * 17 16 15 19 19 C 1.54300 * 110.23699 * 91.79852 * 18 17 16 20 20 N 1.44570 * 109.44948 * 54.99831 * 13 12 11 21 21 C 1.36935 * 118.64545 * 30.72301 * 20 13 12 22 22 H 1.08001 * 120.00162 * 27.91487 * 21 20 13 23 23 C 1.38815 * 120.00239 * 207.91836 * 21 20 13 24 24 N 1.31621 * 119.99731 * 16.17757 * 23 21 20 25 25 Si 1.86795 * 120.00321 * 196.17141 * 23 21 20 26 26 H 1.48505 * 109.47353 * 265.01264 * 25 23 21 27 27 H 1.48503 * 109.46942 * 145.01348 * 25 23 21 28 28 H 1.48494 * 109.47017 * 25.01331 * 25 23 21 29 29 H 1.09007 * 109.47131 * 263.69654 * 1 2 3 30 30 H 1.08997 * 109.47429 * 23.69147 * 1 2 3 31 31 H 1.09000 * 109.47541 * 143.69459 * 1 2 3 32 32 H 1.07999 * 120.36756 * 359.97438 * 3 2 1 33 33 H 0.96700 * 113.99650 * 269.97383 * 5 4 3 34 34 H 1.07998 * 119.68109 * 180.02562 * 7 6 4 35 35 H 0.96997 * 119.99867 * 0.02562 * 11 9 8 36 36 H 1.08993 * 109.47353 * 60.00128 * 12 11 9 37 37 H 1.09005 * 109.47400 * 299.99488 * 12 11 9 38 38 H 1.09009 * 109.32722 * 288.96551 * 15 13 12 39 39 H 1.08995 * 109.33087 * 48.61522 * 15 13 12 40 40 H 1.09005 * 108.51596 * 184.05468 * 16 15 13 41 41 H 1.09004 * 108.51456 * 301.70519 * 16 15 13 42 42 H 1.08994 * 109.49006 * 34.95742 * 17 16 15 43 43 H 1.09000 * 109.48852 * 155.02192 * 17 16 15 44 44 H 1.08999 * 109.36842 * 212.07904 * 18 17 16 45 45 H 1.08997 * 109.37170 * 331.69776 * 18 17 16 46 46 H 1.08996 * 109.14298 * 199.01301 * 19 18 17 47 47 H 1.09004 * 108.95707 * 80.26704 * 19 18 17 48 48 H 0.96999 * 120.00079 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0058 5 8 4.3043 2.3078 -0.0115 6 7 4.2548 -0.0066 -0.0054 7 6 3.6204 -1.1601 0.0000 8 6 2.2255 -1.2043 0.0060 9 6 1.5171 -2.4993 0.0114 10 8 0.3066 -2.5296 0.1207 11 7 2.2122 -3.6482 -0.1049 12 6 1.5090 -4.9334 -0.1000 13 6 2.5231 -6.0701 -0.2441 14 1 3.0031 -6.0066 -1.2207 15 6 1.7939 -7.4303 -0.1155 16 6 2.6872 -8.5285 -0.5147 17 6 3.9270 -8.6802 0.3615 18 6 5.0057 -7.7482 -0.1325 19 6 4.9208 -6.3953 0.6046 20 7 3.5241 -5.9564 0.7927 21 6 3.1631 -5.4142 1.9972 22 1 2.1424 -5.4938 2.3410 23 6 4.1089 -4.7620 2.7762 24 7 5.2513 -4.3824 2.2440 25 14 3.7605 -4.4230 4.5798 26 1 3.2105 -3.0516 4.7285 27 1 5.0204 -4.5381 5.3575 28 1 2.7737 -5.4098 5.0873 29 1 -0.3634 -0.1128 1.0215 30 1 -0.3634 0.9410 -0.4129 31 1 -0.3634 -0.8281 -0.6085 32 1 1.6936 2.1314 -0.0004 33 1 4.5039 2.6423 -0.8966 34 1 4.1849 -2.0808 0.0005 35 1 3.1779 -3.6241 -0.1917 36 1 0.8056 -4.9659 -0.9320 37 1 0.9669 -5.0475 0.8388 38 1 1.4825 -7.5763 0.9189 39 1 0.9151 -7.4309 -0.7603 40 1 2.1244 -9.4615 -0.4827 41 1 3.0107 -8.3558 -1.5412 42 1 3.6761 -8.4321 1.3927 43 1 4.2841 -9.7089 0.3112 44 1 5.9822 -8.1976 0.0479 45 1 4.8783 -7.5826 -1.2023 46 1 5.4545 -5.6400 0.0279 47 1 5.3955 -6.4936 1.5809 48 1 5.9125 -3.9270 2.7885 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000969025715.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:41:21 Heat of formation + Delta-G solvation = -42.299435 kcal Electronic energy + Delta-G solvation = -30236.890365 eV Core-core repulsion = 26291.746963 eV Total energy + Delta-G solvation = -3945.143402 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.89249 -40.45372 -39.51740 -37.99482 -36.14357 -35.28237 -34.70194 -33.40731 -32.45825 -31.52642 -29.12951 -28.36465 -27.18379 -25.34198 -25.16526 -23.84556 -22.97708 -21.72138 -21.06705 -20.77479 -19.45652 -18.94583 -18.26587 -17.69070 -17.22263 -16.88295 -16.49307 -16.24548 -16.02435 -15.89284 -15.60266 -15.19508 -15.02240 -14.62117 -14.54649 -14.19321 -13.94917 -13.71192 -13.66917 -13.55875 -13.36540 -13.28536 -13.11951 -12.90317 -12.81797 -12.72166 -12.63299 -12.37013 -12.00462 -11.52104 -11.37152 -11.29568 -11.17161 -11.06624 -10.85746 -10.66457 -10.39016 -10.33906 -10.11223 -9.71364 -8.53427 -7.78940 -5.20155 -0.48844 0.08785 1.37578 1.45364 1.48199 1.80612 2.35967 2.51655 2.53389 2.71583 3.36520 3.49467 3.62812 3.64098 3.74833 3.98721 4.06851 4.11178 4.23444 4.30164 4.44665 4.48118 4.53672 4.62060 4.66079 4.70191 4.72369 4.78766 4.85717 5.03563 5.05003 5.11267 5.16156 5.26878 5.29761 5.34073 5.41488 5.44928 5.48604 5.58233 5.67754 5.71686 5.78963 5.82153 5.92930 6.48241 6.54476 6.69386 6.79314 7.28052 7.30328 8.02894 8.40981 9.23841 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012147 B = 0.004240 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.576188 B = 6601.498632 C = 7333.490507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.024 3.976 3 C -0.189 4.189 4 C 0.328 3.672 5 O -0.485 6.485 6 N -0.537 5.537 7 C 0.171 3.829 8 C -0.214 4.214 9 C 0.557 3.443 10 O -0.571 6.571 11 N -0.685 5.685 12 C 0.133 3.867 13 C 0.171 3.829 14 H 0.058 0.942 15 C -0.127 4.127 16 C -0.100 4.100 17 C -0.103 4.103 18 C -0.132 4.132 19 C 0.189 3.811 20 N -0.587 5.587 21 C -0.228 4.228 22 H 0.050 0.950 23 C -0.024 4.024 24 N -0.912 5.912 25 Si 0.922 3.078 26 H -0.304 1.304 27 H -0.296 1.296 28 H -0.279 1.279 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.181 0.819 33 H 0.425 0.575 34 H 0.157 0.843 35 H 0.407 0.593 36 H 0.072 0.928 37 H 0.045 0.955 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.061 0.939 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.004 0.996 47 H 0.037 0.963 48 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.352 4.291 -10.821 12.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.016 3.984 3 C -0.210 4.210 4 C 0.150 3.850 5 O -0.296 6.296 6 N -0.257 5.257 7 C 0.012 3.988 8 C -0.219 4.219 9 C 0.344 3.656 10 O -0.454 6.454 11 N -0.333 5.333 12 C 0.009 3.991 13 C 0.064 3.936 14 H 0.076 0.924 15 C -0.168 4.168 16 C -0.138 4.138 17 C -0.141 4.141 18 C -0.171 4.171 19 C 0.064 3.936 20 N -0.310 5.310 21 C -0.359 4.359 22 H 0.067 0.933 23 C -0.220 4.220 24 N -0.558 5.558 25 Si 0.754 3.246 26 H -0.232 1.232 27 H -0.223 1.223 28 H -0.204 1.204 29 H 0.093 0.907 30 H 0.116 0.884 31 H 0.102 0.898 32 H 0.199 0.801 33 H 0.287 0.713 34 H 0.174 0.826 35 H 0.243 0.757 36 H 0.090 0.910 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.061 0.939 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.022 0.978 47 H 0.056 0.944 48 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -5.150 4.333 -10.116 12.151 hybrid contribution 0.111 0.294 1.252 1.291 sum -5.039 4.626 -8.865 11.197 Atomic orbital electron populations 1.21032 0.87604 1.04540 1.03717 1.20635 0.98496 0.90451 0.88843 1.22194 0.93002 1.00175 1.05629 1.19638 0.87900 0.85194 0.92313 1.84678 1.75904 1.33019 1.36045 1.67168 1.42949 0.98911 1.16645 1.22730 0.90683 0.95216 0.90141 1.20963 0.95051 0.95048 1.10848 1.18034 0.86685 0.84091 0.76770 1.90649 1.14233 1.87763 1.52776 1.45703 1.11444 1.05282 1.70907 1.21524 0.94755 0.82331 1.00516 1.20708 0.88948 0.92171 0.91803 0.92449 1.21275 0.98635 0.95954 1.00903 1.20278 0.96088 0.98154 0.99266 1.20902 0.95564 0.98076 0.99574 1.21986 0.98608 0.96662 0.99844 1.20854 0.84043 0.91099 0.97611 1.43776 1.06376 1.70058 1.10768 1.18930 0.94645 1.26879 0.95483 0.93268 1.25179 0.97950 0.99167 0.99736 1.70084 1.08571 1.42873 1.34318 0.85972 0.76474 0.77030 0.85139 1.23242 1.22294 1.20440 0.90677 0.88444 0.89759 0.80131 0.71279 0.82611 0.75673 0.90964 0.93636 0.93911 0.90719 0.92016 0.92018 0.93926 0.91989 0.92290 0.92172 0.97781 0.94430 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.80 8.83 71.23 0.63 -2.17 16 2 C 0.02 0.69 5.95 -19.44 -0.12 0.57 16 3 C -0.19 -4.57 9.70 22.43 0.22 -4.35 16 4 C 0.33 9.22 7.74 84.82 0.66 9.88 16 5 O -0.49 -10.85 13.55 -88.05 -1.19 -12.05 16 6 N -0.54 -18.72 10.37 -307.80 -3.19 -21.91 16 7 C 0.17 6.17 10.69 85.04 0.91 7.08 16 8 C -0.21 -7.44 5.89 -20.00 -0.12 -7.55 16 9 C 0.56 21.28 7.72 86.72 0.67 21.95 16 10 O -0.57 -23.17 13.50 -3.98 -0.05 -23.23 16 11 N -0.69 -25.98 4.67 -466.17 -2.18 -28.16 16 12 C 0.13 4.79 4.53 86.38 0.39 5.18 16 13 C 0.17 5.94 2.19 45.99 0.10 6.04 16 14 H 0.06 1.89 8.06 -2.39 -0.02 1.87 16 15 C -0.13 -3.82 5.06 29.39 0.15 -3.67 16 16 C -0.10 -2.70 5.16 28.61 0.15 -2.56 16 17 C -0.10 -3.18 5.51 29.76 0.16 -3.02 16 18 C -0.13 -4.33 5.71 30.34 0.17 -4.15 16 19 C 0.19 7.98 4.70 86.61 0.41 8.38 16 20 N -0.59 -24.66 1.77 -673.55 -1.19 -25.85 16 21 C -0.23 -11.14 7.63 84.03 0.64 -10.50 16 22 H 0.05 2.54 6.73 -2.91 -0.02 2.52 16 23 C -0.02 -1.23 4.84 84.86 0.41 -0.82 16 24 N -0.91 -48.71 11.13 21.65 0.24 -48.47 16 25 Si 0.92 44.93 29.58 68.60 2.03 46.96 16 26 H -0.30 -15.44 7.11 99.48 0.71 -14.73 16 27 H -0.30 -14.61 7.11 99.48 0.71 -13.91 16 28 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 29 H 0.07 1.98 8.14 -2.38 -0.02 1.96 16 30 H 0.10 1.64 8.06 -2.39 -0.02 1.62 16 31 H 0.08 2.43 5.97 -2.39 -0.01 2.41 16 32 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 33 H 0.42 4.49 9.06 -74.06 -0.67 3.82 16 34 H 0.16 6.05 6.45 -2.91 -0.02 6.03 16 35 H 0.41 16.12 6.17 -92.71 -0.57 15.55 16 36 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 1.87 6.83 -2.38 -0.02 1.85 16 38 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 39 H 0.07 1.88 8.11 -2.39 -0.02 1.86 16 40 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 41 H 0.06 1.52 7.35 -2.39 -0.02 1.50 16 42 H 0.04 1.59 7.49 -2.39 -0.02 1.57 16 43 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 44 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 45 H 0.06 1.79 7.31 -2.39 -0.02 1.77 16 46 H 0.00 0.19 8.02 -2.39 -0.02 0.17 16 47 H 0.04 1.85 6.44 -2.38 -0.02 1.83 16 48 H 0.24 13.26 8.31 -92.71 -0.77 12.49 16 Total: -1.00 -63.07 375.01 -0.35 -63.42 By element: Atomic # 1 Polarization: 29.24 SS G_CDS: -0.25 Total: 29.00 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: 5.43 Total: 20.29 kcal Atomic # 7 Polarization: -118.08 SS G_CDS: -6.32 Total: -124.40 kcal Atomic # 8 Polarization: -34.03 SS G_CDS: -1.25 Total: -35.28 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.07 -0.35 -63.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000969025715.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.121 kcal (2) G-P(sol) polarization free energy of solvation -63.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds