Wall clock time and date at job start Tue Mar 31 2020 17:12:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38092 * 119.58121 * 2 1 4 4 C 1.38788 * 119.28515 * 179.74416 * 3 2 1 5 5 C 1.50700 * 120.75666 * 180.29600 * 4 3 2 6 6 C 1.38419 * 118.48360 * 0.53606 * 4 3 2 7 7 C 1.50701 * 120.44384 * 179.73281 * 6 4 3 8 8 C 1.50703 * 109.47095 * 269.72806 * 7 6 4 9 9 O 1.21277 * 120.00030 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99337 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.65337 * 0.04393 * 10 8 7 12 12 C 1.54326 * 107.27056 * 181.02279 * 11 10 8 13 13 C 1.55159 * 102.94313 * 22.19127 * 12 11 10 14 14 H 1.09003 * 111.00332 * 82.56849 * 13 12 11 15 15 N 1.46498 * 111.03506 * 206.40855 * 13 12 11 16 16 C 1.46500 * 120.00079 * 55.39667 * 15 13 12 17 17 C 1.36937 * 119.99843 * 235.39323 * 15 13 12 18 18 H 1.08003 * 120.00139 * 23.39516 * 17 15 13 19 19 C 1.38814 * 119.99882 * 203.39921 * 17 15 13 20 20 N 1.31619 * 120.00149 * 14.28559 * 19 17 15 21 21 Si 1.86799 * 119.99929 * 194.29045 * 19 17 15 22 22 H 1.48502 * 109.47306 * 89.99844 * 21 19 17 23 23 H 1.48502 * 109.47377 * 209.99698 * 21 19 17 24 24 H 1.48500 * 109.47125 * 330.00027 * 21 19 17 25 25 C 1.47433 * 125.64046 * 180.02562 * 10 8 7 26 26 C 1.38883 * 119.11480 * 359.46872 * 6 4 3 27 27 O 1.35674 * 119.68339 * 180.25398 * 26 6 4 28 28 N 1.31929 * 119.58087 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47408 * 269.98069 * 1 2 3 30 30 H 1.09003 * 109.46764 * 29.98201 * 1 2 3 31 31 H 1.09005 * 109.46727 * 149.97639 * 1 2 3 32 32 H 1.08003 * 120.35555 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.46794 * 270.24711 * 5 4 3 34 34 H 1.09001 * 109.47245 * 30.25018 * 5 4 3 35 35 H 1.09000 * 109.46803 * 150.24801 * 5 4 3 36 36 H 1.08998 * 109.47379 * 149.72658 * 7 6 4 37 37 H 1.08998 * 109.47116 * 29.72690 * 7 6 4 38 38 H 1.09004 * 109.87803 * 300.43592 * 11 10 8 39 39 H 1.08993 * 109.88629 * 61.45094 * 11 10 8 40 40 H 1.08995 * 110.71776 * 263.82582 * 12 11 10 41 41 H 1.09000 * 110.71866 * 140.55247 * 12 11 10 42 42 H 1.09001 * 109.47366 * 95.18041 * 16 15 13 43 43 H 1.09000 * 109.46700 * 215.18024 * 16 15 13 44 44 H 1.08999 * 109.47236 * 335.17654 * 16 15 13 45 45 H 0.96997 * 120.00251 * 180.02562 * 20 19 17 46 46 H 1.08993 * 110.37010 * 37.07033 * 25 10 8 47 47 H 1.09003 * 110.45371 * 274.78668 * 25 10 8 48 48 H 0.96692 * 114.00389 * 89.99624 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1938 0.0054 5 6 4.3539 2.4848 0.0123 6 6 4.2305 -0.0262 -0.0007 7 6 5.7363 -0.0855 -0.0013 8 6 6.2378 -0.1050 -1.4223 9 8 5.4499 -0.0743 -2.3438 10 7 7.5618 -0.1566 -1.6690 11 6 8.6220 -0.1988 -0.6513 12 6 9.9726 -0.2247 -1.3976 13 6 9.6155 0.3752 -2.7833 14 1 9.6096 1.4647 -2.7475 15 7 10.5330 -0.1085 -3.8179 16 6 10.7075 -1.5479 -4.0274 17 6 11.2274 0.7848 -4.5892 18 1 11.4092 1.7854 -4.2255 19 6 11.6977 0.4044 -5.8386 20 7 11.2491 -0.6965 -6.4035 21 14 12.9674 1.4549 -6.7182 22 1 14.3308 1.0022 -6.3422 23 1 12.7890 1.3215 -8.1864 24 1 12.7919 2.8762 -6.3254 25 6 8.1867 -0.1803 -3.0041 26 6 3.4803 -1.1950 -0.0008 27 8 4.1093 -2.3971 -0.0016 28 7 2.1583 -1.1473 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6477 2.1357 0.0004 33 1 4.5415 2.8013 -1.0137 34 1 3.7788 3.2525 0.5300 35 1 5.3037 2.3343 0.5255 36 1 6.0646 -0.9892 0.5122 37 1 6.1346 0.7894 0.5125 38 1 8.5646 0.6874 -0.0193 39 1 8.5154 -1.0961 -0.0419 40 1 10.3359 -1.2470 -1.5020 41 1 10.7077 0.3967 -0.8862 42 1 10.0472 -1.8812 -4.8281 43 1 11.7425 -1.7523 -4.3012 44 1 10.4625 -2.0811 -3.1089 45 1 11.5779 -0.9625 -7.2763 46 1 7.6338 0.4580 -3.6932 47 1 8.2313 -1.2004 -3.3857 48 1 4.2922 -2.7459 0.8815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972158450.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:26 Heat of formation + Delta-G solvation = -14.358298 kcal Electronic energy + Delta-G solvation = -28963.106773 eV Core-core repulsion = 25019.174989 eV Total energy + Delta-G solvation = -3943.931784 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.03027 -39.56713 -37.48190 -37.39172 -34.93454 -34.78355 -32.14619 -31.71501 -30.50172 -29.67077 -28.11407 -27.80964 -26.12493 -25.90129 -23.55520 -22.74912 -22.33359 -21.09832 -19.32724 -18.96234 -18.51210 -17.46179 -17.04164 -16.96028 -15.99824 -15.76075 -15.50185 -14.86971 -14.77688 -14.36439 -14.10788 -13.69968 -13.52581 -13.40525 -13.29583 -13.15827 -13.10878 -12.65854 -12.54532 -12.47068 -12.38236 -12.10186 -12.03032 -11.86082 -11.71265 -11.63063 -11.49007 -10.93169 -10.82529 -10.53230 -10.46599 -10.27590 -9.91306 -9.85127 -9.73689 -9.56717 -9.48438 -8.77565 -8.61206 -8.29384 -6.82234 -5.77841 -3.26140 0.82525 1.04091 2.86545 3.16529 3.35632 3.37077 3.42439 3.43980 3.58226 4.25238 4.39461 4.44687 4.64044 4.65512 4.77496 4.92415 4.98764 5.07966 5.15329 5.19730 5.25571 5.28471 5.32127 5.37892 5.43329 5.46901 5.53842 5.61929 5.65477 5.79461 5.84091 5.88134 5.88663 6.00309 6.10580 6.29128 6.38423 6.39231 6.54552 6.63642 6.77678 6.86734 7.29938 7.34732 7.68721 7.76121 7.80711 7.83445 8.33128 8.43275 9.16485 9.79044 10.28083 11.26376 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.002420 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.329752 B =11566.208720 C =11733.096075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.184 4.184 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.135 4.135 7 C -0.090 4.090 8 C 0.529 3.471 9 O -0.537 6.537 10 N -0.615 5.615 11 C 0.104 3.896 12 C -0.154 4.154 13 C 0.173 3.827 14 H 0.077 0.923 15 N -0.584 5.584 16 C 0.157 3.843 17 C -0.263 4.263 18 H 0.070 0.930 19 C 0.005 3.995 20 N -0.902 5.902 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.279 1.279 25 C 0.087 3.913 26 C 0.332 3.668 27 O -0.475 6.475 28 N -0.508 5.508 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.042 0.958 44 H 0.004 0.996 45 H 0.254 0.746 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.732 2.975 20.268 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.019 4.019 5 C -0.177 4.177 6 C -0.139 4.139 7 C -0.130 4.130 8 C 0.317 3.683 9 O -0.413 6.413 10 N -0.350 5.350 11 C -0.020 4.020 12 C -0.194 4.194 13 C 0.062 3.938 14 H 0.095 0.905 15 N -0.304 5.304 16 C 0.013 3.987 17 C -0.392 4.392 18 H 0.088 0.912 19 C -0.194 4.194 20 N -0.546 5.546 21 Si 0.737 3.263 22 H -0.214 1.214 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.037 4.037 26 C 0.153 3.847 27 O -0.281 6.281 28 N -0.228 5.228 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.052 0.948 43 H 0.060 0.940 44 H 0.022 0.978 45 H 0.064 0.936 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -15.597 2.149 18.967 24.650 hybrid contribution 1.244 0.927 -0.145 1.558 sum -14.353 3.076 18.822 23.870 Atomic orbital electron populations 1.20729 0.88577 1.03692 1.03034 1.20953 0.96678 0.87221 0.93971 1.21769 0.93862 0.99334 1.05380 1.20055 0.93735 0.94870 0.93236 1.20910 0.99820 0.93348 1.03630 1.20155 0.95571 0.92889 1.05304 1.20462 0.91539 1.05008 0.95985 1.19920 0.80887 0.76871 0.90613 1.90722 1.54340 1.49915 1.46356 1.48536 1.04545 1.72483 1.09405 1.22024 0.88116 1.00565 0.91266 1.23197 0.94526 1.03102 0.98550 1.21454 0.87103 0.97145 0.88053 0.90461 1.43861 1.45669 1.02729 1.38159 1.20826 1.00485 0.82425 0.94965 1.19208 1.28136 0.95477 0.96372 0.91202 1.25074 1.00424 0.97883 0.96032 1.70073 1.43476 1.25008 1.16027 0.86221 0.81469 0.79841 0.78769 1.21415 1.21721 1.20423 1.23108 0.95620 1.02002 0.82951 1.18828 0.86597 0.84760 0.94481 1.84878 1.76525 1.33465 1.33249 1.66958 1.09485 1.30704 1.15641 0.90339 0.90500 0.90371 0.84502 0.89803 0.90757 0.90785 0.88033 0.87878 0.91980 0.92101 0.90380 0.90558 0.94850 0.93964 0.97777 0.93572 0.91073 0.91512 0.74771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.43 16 2 C 0.15 1.71 6.78 -82.60 -0.56 1.15 16 3 C -0.18 -1.90 9.44 -39.43 -0.37 -2.27 16 4 C -0.01 -0.13 5.91 -104.35 -0.62 -0.75 16 5 C -0.12 -1.05 9.67 36.01 0.35 -0.71 16 6 C -0.14 -1.72 4.40 -104.32 -0.46 -2.18 16 7 C -0.09 -1.02 4.45 -29.03 -0.13 -1.15 16 8 C 0.53 8.68 7.84 -10.98 -0.09 8.59 16 9 O -0.54 -11.32 16.29 5.56 0.09 -11.23 16 10 N -0.61 -9.90 3.33 -170.53 -0.57 -10.46 16 11 C 0.10 1.29 6.49 -3.07 -0.02 1.27 16 12 C -0.15 -2.32 6.49 -24.89 -0.16 -2.49 16 13 C 0.17 3.39 3.54 -65.79 -0.23 3.16 16 14 H 0.08 1.52 7.95 -51.93 -0.41 1.11 16 15 N -0.58 -14.12 2.96 -171.04 -0.51 -14.63 16 16 C 0.16 3.76 7.73 59.85 0.46 4.22 16 17 C -0.26 -7.02 9.60 -15.06 -0.14 -7.16 16 18 H 0.07 1.81 7.86 -52.48 -0.41 1.40 16 19 C 0.01 0.14 5.07 -17.43 -0.09 0.05 16 20 N -0.90 -26.11 10.81 55.49 0.60 -25.51 16 21 Si 0.91 21.55 29.58 -169.99 -5.03 16.52 16 22 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 25 C 0.09 1.72 6.49 -2.54 -0.02 1.71 16 26 C 0.33 4.59 7.72 -17.12 -0.13 4.46 16 27 O -0.47 -5.99 12.62 -18.72 -0.24 -6.22 16 28 N -0.51 -7.10 10.30 -9.55 -0.10 -7.20 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.47 8.10 -51.93 -0.42 0.05 16 35 H 0.07 0.56 6.08 -51.93 -0.32 0.25 16 36 H 0.10 0.94 7.55 -51.93 -0.39 0.55 16 37 H 0.10 0.89 6.06 -51.93 -0.31 0.58 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.08 1.24 6.17 -51.93 -0.32 0.92 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.03 0.88 7.32 -51.93 -0.38 0.50 16 43 H 0.04 1.08 7.40 -51.93 -0.38 0.69 16 44 H 0.00 0.08 6.17 -51.93 -0.32 -0.24 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.07 1.55 8.04 -51.93 -0.42 1.14 16 47 H 0.07 1.44 7.20 -51.93 -0.37 1.06 16 48 H 0.40 2.60 9.06 45.56 0.41 3.02 16 LS Contribution 387.25 15.07 5.84 5.84 Total: -1.00 -35.96 387.25 -8.32 -44.28 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -6.57 Total: 1.14 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: -1.84 Total: 7.48 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: -0.57 Total: -57.80 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: -0.15 Total: -17.45 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.03 Total: 16.52 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -35.96 -8.32 -44.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972158450.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.918 kcal (2) G-P(sol) polarization free energy of solvation -35.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds