Wall clock time and date at job start Tue Mar 31 2020 17:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38092 * 119.58121 * 2 1 4 4 C 1.38788 * 119.28515 * 179.74416 * 3 2 1 5 5 C 1.50700 * 120.75666 * 180.29600 * 4 3 2 6 6 C 1.38419 * 118.48360 * 0.53606 * 4 3 2 7 7 C 1.50701 * 120.44384 * 179.73281 * 6 4 3 8 8 C 1.50703 * 109.47095 * 269.72806 * 7 6 4 9 9 O 1.21277 * 120.00030 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99337 * 179.97438 * 8 7 6 11 11 C 1.47018 * 125.65337 * 0.04393 * 10 8 7 12 12 C 1.54326 * 107.27056 * 181.02279 * 11 10 8 13 13 C 1.55159 * 102.94313 * 22.19127 * 12 11 10 14 14 H 1.09003 * 111.00332 * 82.56849 * 13 12 11 15 15 N 1.46498 * 111.03506 * 206.40855 * 13 12 11 16 16 C 1.46500 * 120.00079 * 55.39667 * 15 13 12 17 17 C 1.36937 * 119.99843 * 235.39323 * 15 13 12 18 18 H 1.08003 * 120.00139 * 23.39516 * 17 15 13 19 19 C 1.38814 * 119.99882 * 203.39921 * 17 15 13 20 20 N 1.31619 * 120.00149 * 14.28559 * 19 17 15 21 21 Si 1.86799 * 119.99929 * 194.29045 * 19 17 15 22 22 H 1.48502 * 109.47306 * 89.99844 * 21 19 17 23 23 H 1.48502 * 109.47377 * 209.99698 * 21 19 17 24 24 H 1.48500 * 109.47125 * 330.00027 * 21 19 17 25 25 C 1.47433 * 125.64046 * 180.02562 * 10 8 7 26 26 C 1.38883 * 119.11480 * 359.46872 * 6 4 3 27 27 O 1.35674 * 119.68339 * 180.25398 * 26 6 4 28 28 N 1.31929 * 119.58087 * 180.02562 * 2 1 3 29 29 H 1.08994 * 109.47408 * 269.98069 * 1 2 3 30 30 H 1.09003 * 109.46764 * 29.98201 * 1 2 3 31 31 H 1.09005 * 109.46727 * 149.97639 * 1 2 3 32 32 H 1.08003 * 120.35555 * 0.02562 * 3 2 1 33 33 H 1.09000 * 109.46794 * 270.24711 * 5 4 3 34 34 H 1.09001 * 109.47245 * 30.25018 * 5 4 3 35 35 H 1.09000 * 109.46803 * 150.24801 * 5 4 3 36 36 H 1.08998 * 109.47379 * 149.72658 * 7 6 4 37 37 H 1.08998 * 109.47116 * 29.72690 * 7 6 4 38 38 H 1.09004 * 109.87803 * 300.43592 * 11 10 8 39 39 H 1.08993 * 109.88629 * 61.45094 * 11 10 8 40 40 H 1.08995 * 110.71776 * 263.82582 * 12 11 10 41 41 H 1.09000 * 110.71866 * 140.55247 * 12 11 10 42 42 H 1.09001 * 109.47366 * 95.18041 * 16 15 13 43 43 H 1.09000 * 109.46700 * 215.18024 * 16 15 13 44 44 H 1.08999 * 109.47236 * 335.17654 * 16 15 13 45 45 H 0.96997 * 120.00251 * 180.02562 * 20 19 17 46 46 H 1.08993 * 110.37010 * 37.07033 * 25 10 8 47 47 H 1.09003 * 110.45371 * 274.78668 * 25 10 8 48 48 H 0.96692 * 114.00389 * 89.99624 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1938 0.0054 5 6 4.3539 2.4848 0.0123 6 6 4.2305 -0.0262 -0.0007 7 6 5.7363 -0.0855 -0.0013 8 6 6.2378 -0.1050 -1.4223 9 8 5.4499 -0.0743 -2.3438 10 7 7.5618 -0.1566 -1.6690 11 6 8.6220 -0.1988 -0.6513 12 6 9.9726 -0.2247 -1.3976 13 6 9.6155 0.3752 -2.7833 14 1 9.6096 1.4647 -2.7475 15 7 10.5330 -0.1085 -3.8179 16 6 10.7075 -1.5479 -4.0274 17 6 11.2274 0.7848 -4.5892 18 1 11.4092 1.7854 -4.2255 19 6 11.6977 0.4044 -5.8386 20 7 11.2491 -0.6965 -6.4035 21 14 12.9674 1.4549 -6.7182 22 1 14.3308 1.0022 -6.3422 23 1 12.7890 1.3215 -8.1864 24 1 12.7919 2.8762 -6.3254 25 6 8.1867 -0.1803 -3.0041 26 6 3.4803 -1.1950 -0.0008 27 8 4.1093 -2.3971 -0.0016 28 7 2.1583 -1.1473 -0.0005 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8902 -0.5136 31 1 -0.3633 -0.8898 -0.5142 32 1 1.6477 2.1357 0.0004 33 1 4.5415 2.8013 -1.0137 34 1 3.7788 3.2525 0.5300 35 1 5.3037 2.3343 0.5255 36 1 6.0646 -0.9892 0.5122 37 1 6.1346 0.7894 0.5125 38 1 8.5646 0.6874 -0.0193 39 1 8.5154 -1.0961 -0.0419 40 1 10.3359 -1.2470 -1.5020 41 1 10.7077 0.3967 -0.8862 42 1 10.0472 -1.8812 -4.8281 43 1 11.7425 -1.7523 -4.3012 44 1 10.4625 -2.0811 -3.1089 45 1 11.5779 -0.9625 -7.2763 46 1 7.6338 0.4580 -3.6932 47 1 8.2313 -1.2004 -3.3857 48 1 4.2922 -2.7459 0.8815 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972158450.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:25 Heat of formation + Delta-G solvation = -41.805027 kcal Electronic energy + Delta-G solvation = -28964.296952 eV Core-core repulsion = 25019.174989 eV Total energy + Delta-G solvation = -3945.121963 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.93236 -40.83608 -38.89947 -38.30210 -36.55004 -35.78167 -33.55360 -32.90440 -31.66259 -30.93101 -29.41687 -28.62828 -28.07559 -26.93613 -25.07090 -23.91704 -23.54332 -21.94506 -20.94827 -20.15746 -19.38900 -18.96255 -18.29473 -18.18370 -17.47230 -16.90489 -16.51418 -16.34803 -15.96601 -15.68256 -15.07326 -15.04538 -14.82021 -14.48201 -14.37112 -14.33098 -14.10713 -13.89580 -13.81733 -13.64727 -13.42042 -13.21115 -13.12296 -12.86829 -12.80572 -12.77598 -12.50742 -12.48778 -12.41973 -12.40249 -12.18219 -12.03751 -11.82101 -11.38934 -11.03194 -10.65519 -10.44350 -10.37515 -9.64897 -9.62590 -8.81011 -7.84986 -5.35780 -0.01916 0.20579 1.47194 1.47737 1.56987 1.63367 1.97838 2.50068 2.57346 2.69476 3.26734 3.43198 3.55061 3.67130 3.69285 3.83582 3.88841 3.95294 4.15073 4.20557 4.22909 4.35592 4.38957 4.46717 4.47687 4.55969 4.63652 4.72034 4.73591 4.78521 4.78869 4.84356 4.89485 5.00777 5.03802 5.11096 5.18896 5.22698 5.25545 5.31659 5.34088 5.43944 5.63924 5.67623 5.68550 6.30099 6.58848 6.63679 6.97507 7.11016 7.17291 7.82463 8.26965 9.17660 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.022371 B = 0.002420 C = 0.002386 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.329752 B =11566.208720 C =11733.096075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.134 3.866 3 C -0.186 4.186 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.154 4.154 7 C -0.076 4.076 8 C 0.524 3.476 9 O -0.594 6.594 10 N -0.614 5.614 11 C 0.105 3.895 12 C -0.140 4.140 13 C 0.166 3.834 14 H 0.076 0.924 15 N -0.601 5.601 16 C 0.176 3.824 17 C -0.266 4.266 18 H 0.077 0.923 19 C -0.055 4.055 20 N -0.939 5.939 21 Si 0.972 3.028 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.265 1.265 25 C 0.098 3.902 26 C 0.312 3.688 27 O -0.493 6.493 28 N -0.542 5.542 29 H 0.097 0.903 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.168 0.832 33 H 0.066 0.934 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.128 0.872 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.093 0.907 40 H 0.070 0.930 41 H 0.099 0.901 42 H -0.004 1.004 43 H 0.018 0.982 44 H 0.038 0.962 45 H 0.248 0.752 46 H 0.035 0.965 47 H 0.040 0.960 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.680 4.856 23.794 28.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.003 4.003 3 C -0.205 4.205 4 C -0.028 4.028 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.115 4.115 8 C 0.315 3.685 9 O -0.475 6.475 10 N -0.347 5.347 11 C -0.017 4.017 12 C -0.179 4.179 13 C 0.057 3.943 14 H 0.094 0.906 15 N -0.322 5.322 16 C 0.031 3.969 17 C -0.396 4.396 18 H 0.095 0.905 19 C -0.250 4.250 20 N -0.585 5.585 21 Si 0.800 3.200 22 H -0.210 1.210 23 H -0.227 1.227 24 H -0.190 1.190 25 C -0.028 4.028 26 C 0.133 3.867 27 O -0.303 6.303 28 N -0.263 5.263 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.186 0.814 33 H 0.084 0.916 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.146 0.854 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.118 0.882 42 H 0.015 0.985 43 H 0.036 0.964 44 H 0.056 0.944 45 H 0.057 0.943 46 H 0.054 0.946 47 H 0.058 0.942 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -15.534 4.044 22.587 27.710 hybrid contribution 1.114 0.345 -1.196 1.670 sum -14.421 4.389 21.390 26.168 Atomic orbital electron populations 1.20825 0.86355 1.04177 1.04387 1.21609 0.98328 0.87141 0.93222 1.22157 0.93912 1.00214 1.04262 1.20488 0.94499 0.95490 0.92339 1.20968 1.00753 0.92736 1.03030 1.20336 0.96232 0.93067 1.06184 1.20482 0.90818 1.07877 0.92327 1.20883 0.80165 0.75203 0.92276 1.90698 1.55773 1.52414 1.48636 1.48592 1.05500 1.72172 1.08486 1.22310 0.84874 1.04195 0.90307 1.23065 0.96834 1.02552 0.95476 1.21635 0.86024 0.97331 0.89304 0.90552 1.44065 1.46770 1.02419 1.38920 1.20506 0.98035 0.83100 0.95282 1.19603 1.27533 0.95998 0.96447 0.90479 1.25888 1.02673 0.99309 0.97122 1.70258 1.45115 1.26968 1.16174 0.85193 0.79049 0.78901 0.76850 1.20958 1.22686 1.19001 1.22642 0.95895 0.99515 0.84751 1.19127 0.86971 0.85383 0.95198 1.84815 1.76506 1.33560 1.35434 1.66980 1.09981 1.32239 1.17085 0.88437 0.88373 0.91477 0.81439 0.91551 0.88105 0.89264 0.85448 0.84307 0.87882 0.88864 0.91110 0.88205 0.98527 0.96351 0.94366 0.94300 0.94620 0.94176 0.72348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.41 10.17 71.24 0.72 -0.68 16 2 C 0.13 2.93 6.78 42.51 0.29 3.22 16 3 C -0.19 -3.49 9.44 22.37 0.21 -3.28 16 4 C -0.02 -0.42 5.91 -19.69 -0.12 -0.54 16 5 C -0.12 -1.73 9.67 71.24 0.69 -1.04 16 6 C -0.15 -3.67 4.40 -19.67 -0.09 -3.76 16 7 C -0.08 -1.49 4.45 29.10 0.13 -1.36 16 8 C 0.52 16.56 7.84 87.66 0.69 17.25 16 9 O -0.59 -25.69 16.29 -3.02 -0.05 -25.74 16 10 N -0.61 -18.73 3.33 -811.83 -2.70 -21.43 16 11 C 0.10 2.13 6.49 86.73 0.56 2.70 16 12 C -0.14 -3.77 6.49 31.78 0.21 -3.56 16 13 C 0.17 6.38 3.54 46.38 0.16 6.55 16 14 H 0.08 2.93 7.95 -2.39 -0.02 2.91 16 15 N -0.60 -29.39 2.96 -695.05 -2.05 -31.45 16 16 C 0.18 8.64 7.73 127.77 0.99 9.63 16 17 C -0.27 -14.32 9.60 84.03 0.81 -13.52 16 18 H 0.08 3.96 7.86 -2.91 -0.02 3.94 16 19 C -0.05 -3.06 5.07 84.86 0.43 -2.63 16 20 N -0.94 -56.50 10.81 21.65 0.23 -56.27 16 21 Si 0.97 44.92 29.58 68.60 2.03 46.95 16 22 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 24 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 25 C 0.10 3.94 6.49 86.85 0.56 4.51 16 26 C 0.31 8.48 7.72 84.78 0.65 9.14 16 27 O -0.49 -12.28 12.62 -89.92 -1.14 -13.41 16 28 N -0.54 -15.12 10.30 -296.97 -3.06 -18.18 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.10 0.93 8.08 -2.39 -0.02 0.91 16 31 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 33 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.10 0.90 8.10 -2.39 -0.02 0.88 16 35 H 0.09 0.98 6.08 -2.39 -0.01 0.97 16 36 H 0.13 1.85 7.55 -2.39 -0.02 1.84 16 37 H 0.14 1.71 6.06 -2.39 -0.01 1.69 16 38 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.07 2.04 6.17 -2.39 -0.01 2.02 16 41 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.00 -0.20 7.32 -2.39 -0.02 -0.22 16 43 H 0.02 0.95 7.40 -2.39 -0.02 0.93 16 44 H 0.04 1.57 6.17 -2.39 -0.01 1.56 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 47 H 0.04 1.81 7.20 -2.39 -0.02 1.79 16 48 H 0.42 5.13 9.06 -74.06 -0.67 4.46 16 Total: -1.00 -84.50 387.25 0.48 -84.02 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.31 Total: 12.88 kcal Atomic # 6 Polarization: 15.72 SS G_CDS: 6.90 Total: 22.62 kcal Atomic # 7 Polarization: -119.75 SS G_CDS: -7.58 Total: -127.33 kcal Atomic # 8 Polarization: -37.96 SS G_CDS: -1.18 Total: -39.15 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -84.50 0.48 -84.02 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972158450.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.217 kcal (2) G-P(sol) polarization free energy of solvation -84.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds