Wall clock time and date at job start Tue Mar 31 2020 17:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38082 * 119.58310 * 2 1 4 4 C 1.38786 * 119.28632 * 179.74763 * 3 2 1 5 5 C 1.50703 * 120.75976 * 180.25533 * 4 3 2 6 6 C 1.38425 * 118.48720 * 0.49546 * 4 3 2 7 7 C 1.50697 * 120.44709 * 179.75870 * 6 4 3 8 8 C 1.50699 * 109.46807 * 269.72291 * 7 6 4 9 9 O 1.21284 * 120.00219 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64255 * 359.96318 * 10 8 7 12 12 C 1.55125 * 104.93965 * 204.03379 * 11 10 8 13 13 C 1.55159 * 101.48536 * 323.22725 * 12 11 10 14 14 H 1.08999 * 110.71697 * 276.82741 * 13 12 11 15 15 N 1.46502 * 110.72058 * 153.73828 * 13 12 11 16 16 C 1.46506 * 119.99328 * 303.83667 * 15 13 12 17 17 C 1.36935 * 120.00407 * 123.83964 * 15 13 12 18 18 H 1.07994 * 119.99888 * 340.89948 * 17 15 13 19 19 C 1.38814 * 120.00022 * 160.62943 * 17 15 13 20 20 N 1.31615 * 119.99810 * 346.91220 * 19 17 15 21 21 Si 1.86794 * 119.99988 * 166.90823 * 19 17 15 22 22 H 1.48498 * 109.46968 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46958 * 120.00017 * 21 19 17 24 24 H 1.48499 * 109.46987 * 240.00112 * 21 19 17 25 25 C 1.47017 * 125.64831 * 180.02562 * 10 8 7 26 26 C 1.38874 * 119.10881 * 359.48612 * 6 4 3 27 27 O 1.35676 * 119.68652 * 180.29671 * 26 6 4 28 28 N 1.31934 * 119.58178 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46575 * 270.01949 * 1 2 3 30 30 H 1.09003 * 109.46975 * 30.01969 * 1 2 3 31 31 H 1.08997 * 109.46988 * 150.02082 * 1 2 3 32 32 H 1.08002 * 120.35849 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47286 * 270.24519 * 5 4 3 34 34 H 1.09000 * 109.47259 * 30.24457 * 5 4 3 35 35 H 1.09000 * 109.47274 * 150.24318 * 5 4 3 36 36 H 1.08997 * 109.46990 * 149.72449 * 7 6 4 37 37 H 1.09004 * 109.47200 * 29.72072 * 7 6 4 38 38 H 1.08991 * 110.37127 * 322.99636 * 11 10 8 39 39 H 1.08999 * 110.36751 * 85.21481 * 11 10 8 40 40 H 1.08996 * 111.16602 * 205.13200 * 12 11 10 41 41 H 1.09005 * 110.93693 * 81.21514 * 12 11 10 42 42 H 1.09004 * 109.47049 * 264.81648 * 16 15 13 43 43 H 1.09000 * 109.47185 * 24.82282 * 16 15 13 44 44 H 1.09006 * 109.46698 * 144.82199 * 16 15 13 45 45 H 0.97003 * 120.00202 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.88722 * 59.49215 * 25 10 8 47 47 H 1.08997 * 109.88512 * 298.31783 * 25 10 8 48 48 H 0.96693 * 114.00137 * 89.99379 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1936 0.0053 5 6 4.3540 2.4846 0.0113 6 6 4.2305 -0.0264 0.0000 7 6 5.7364 -0.0857 -0.0001 8 6 6.2382 -0.1059 -1.4209 9 8 5.4506 -0.0748 -2.3427 10 7 7.5623 -0.1577 -1.6673 11 6 8.6251 -0.1978 -0.6464 12 6 9.8843 0.3634 -1.3578 13 6 9.7142 -0.2139 -2.7879 14 1 10.0896 -1.2360 -2.8383 15 7 10.3907 0.6337 -3.7729 16 6 10.0523 2.0557 -3.8709 17 6 11.3392 0.0968 -4.6019 18 1 11.8124 -0.8396 -4.3460 19 6 11.6885 0.7535 -5.7740 20 7 10.9433 1.7416 -6.2218 21 14 13.2160 0.2347 -6.7156 22 1 13.8754 -0.8916 -6.0072 23 1 12.8315 -0.1974 -8.0833 24 1 14.1558 1.3810 -6.8044 25 6 8.1858 -0.1821 -2.9984 26 6 3.4803 -1.1950 0.0004 27 8 4.1092 -2.3973 0.0013 28 7 2.1584 -1.1474 0.0005 29 1 -0.3632 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6478 2.1356 0.0004 33 1 4.5417 2.8005 -1.0149 34 1 3.7790 3.2527 0.5284 35 1 5.3038 2.3345 0.5246 36 1 6.0644 -0.9891 0.5141 37 1 6.1345 0.7895 0.5134 38 1 8.3580 0.4290 0.2043 39 1 8.8001 -1.2233 -0.3211 40 1 10.7974 -0.0078 -0.8926 41 1 9.8702 1.4533 -1.3723 42 1 9.3048 2.1984 -4.6513 43 1 9.6525 2.4006 -2.9173 44 1 10.9480 2.6262 -4.1171 45 1 11.1871 2.2003 -7.0410 46 1 7.9067 0.7125 -3.5551 47 1 7.8679 -1.0727 -3.5404 48 1 4.2913 -2.7452 0.8848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972158451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:29 Heat of formation + Delta-G solvation = -12.024755 kcal Electronic energy + Delta-G solvation = -29039.613624 eV Core-core repulsion = 25095.783031 eV Total energy + Delta-G solvation = -3943.830594 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.02639 -39.56303 -37.48318 -37.39221 -34.92704 -34.78262 -32.14114 -31.70638 -30.48850 -29.65019 -28.10778 -27.79219 -26.13425 -25.89521 -23.54385 -22.73702 -22.36108 -21.10660 -19.29768 -18.96864 -18.51313 -17.43972 -17.07808 -16.92439 -16.02243 -15.75090 -15.47280 -14.94856 -14.81748 -14.27294 -14.10291 -13.69583 -13.57293 -13.40885 -13.27339 -13.14380 -13.12497 -12.65877 -12.53835 -12.45875 -12.23644 -12.08920 -12.01352 -11.80901 -11.70883 -11.62589 -11.49861 -10.92809 -10.81931 -10.58257 -10.45602 -10.27495 -9.90368 -9.83478 -9.74264 -9.56268 -9.47740 -8.77222 -8.59120 -8.28121 -6.87201 -5.77037 -3.21947 0.82980 1.04719 2.87666 3.17105 3.35574 3.37258 3.43046 3.45078 3.58664 4.25780 4.40492 4.45009 4.64229 4.66308 4.76216 4.93228 4.97679 5.08821 5.16072 5.20570 5.24483 5.31398 5.31891 5.38307 5.43449 5.50614 5.54602 5.59922 5.66482 5.78305 5.85266 5.87959 5.89133 5.98371 6.11646 6.33054 6.35507 6.39282 6.54046 6.67206 6.80850 6.85315 7.34391 7.36075 7.69252 7.78198 7.80843 7.83602 8.31652 8.44370 9.17453 9.80155 10.27406 11.27651 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.002435 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.019017 B =11497.579983 C =11667.044675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.135 4.135 7 C -0.089 4.089 8 C 0.529 3.471 9 O -0.536 6.536 10 N -0.614 5.614 11 C 0.100 3.900 12 C -0.153 4.153 13 C 0.173 3.827 14 H 0.078 0.922 15 N -0.588 5.588 16 C 0.162 3.838 17 C -0.258 4.258 18 H 0.073 0.927 19 C 0.001 3.999 20 N -0.906 5.906 21 Si 0.908 3.092 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.289 1.289 25 C 0.088 3.912 26 C 0.332 3.668 27 O -0.475 6.475 28 N -0.508 5.508 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.137 0.863 33 H 0.084 0.916 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.067 0.933 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.029 0.971 43 H 0.000 1.000 44 H 0.048 0.952 45 H 0.253 0.747 46 H 0.071 0.929 47 H 0.059 0.941 48 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.340 -0.402 20.174 24.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.018 4.018 5 C -0.177 4.177 6 C -0.139 4.139 7 C -0.130 4.130 8 C 0.316 3.684 9 O -0.413 6.413 10 N -0.348 5.348 11 C -0.023 4.023 12 C -0.193 4.193 13 C 0.062 3.938 14 H 0.096 0.904 15 N -0.308 5.308 16 C 0.018 3.982 17 C -0.388 4.388 18 H 0.090 0.910 19 C -0.197 4.197 20 N -0.551 5.551 21 Si 0.738 3.262 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.216 1.216 25 C -0.036 4.036 26 C 0.153 3.847 27 O -0.281 6.281 28 N -0.228 5.228 29 H 0.097 0.903 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.155 0.845 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.085 0.915 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.018 0.982 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.090 0.910 47 H 0.077 0.923 48 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -15.226 -1.015 18.884 24.279 hybrid contribution 1.321 0.334 -0.222 1.380 sum -13.905 -0.682 18.663 23.283 Atomic orbital electron populations 1.20729 0.88575 1.03692 1.03029 1.20949 0.96675 0.87218 0.93984 1.21770 0.93862 0.99348 1.05334 1.20065 0.93741 0.94888 0.93154 1.20913 0.99800 0.93337 1.03689 1.20151 0.95561 0.92886 1.05314 1.20460 0.91552 1.04977 0.95991 1.19934 0.80892 0.76937 0.90614 1.90725 1.54426 1.49823 1.46322 1.48542 1.04566 1.72486 1.09248 1.22359 0.88090 1.00577 0.91275 1.23388 0.95710 1.01891 0.98317 1.21342 0.88665 0.95231 0.88560 0.90383 1.43978 1.43166 1.04570 1.39079 1.20813 0.99660 0.83355 0.94392 1.19298 1.12622 1.06982 0.99873 0.90958 1.25009 0.99170 0.98981 0.96554 1.70108 1.37340 1.25261 1.22380 0.86136 0.82634 0.77814 0.79652 1.20286 1.21717 1.21601 1.22886 0.95657 1.02100 0.83000 1.18819 0.86599 0.84731 0.94551 1.84874 1.76552 1.33484 1.33231 1.66956 1.09477 1.30704 1.15674 0.90342 0.90491 0.90382 0.84487 0.89756 0.90738 0.90801 0.88026 0.87891 0.91478 0.91602 0.90347 0.90471 0.95269 0.98170 0.93335 0.93683 0.91016 0.92295 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.17 36.01 0.37 -0.44 16 2 C 0.15 1.72 6.78 -82.60 -0.56 1.16 16 3 C -0.18 -1.92 9.44 -39.44 -0.37 -2.30 16 4 C -0.01 -0.13 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.10 9.67 36.01 0.35 -0.76 16 6 C -0.14 -1.73 4.40 -104.32 -0.46 -2.19 16 7 C -0.09 -1.02 4.26 -29.04 -0.12 -1.15 16 8 C 0.53 8.72 7.84 -10.98 -0.09 8.63 16 9 O -0.54 -11.40 16.36 5.55 0.09 -11.31 16 10 N -0.61 -9.90 3.33 -170.40 -0.57 -10.46 16 11 C 0.10 1.24 6.69 -2.41 -0.02 1.22 16 12 C -0.15 -2.30 6.62 -24.46 -0.16 -2.47 16 13 C 0.17 3.36 3.43 -66.10 -0.23 3.13 16 14 H 0.08 1.50 7.91 -51.93 -0.41 1.09 16 15 N -0.59 -14.23 2.94 -171.38 -0.50 -14.73 16 16 C 0.16 3.91 7.68 59.85 0.46 4.37 16 17 C -0.26 -6.91 9.66 -15.06 -0.15 -7.05 16 18 H 0.07 1.87 7.81 -52.49 -0.41 1.46 16 19 C 0.00 0.03 5.11 -17.43 -0.09 -0.05 16 20 N -0.91 -26.23 10.50 55.49 0.58 -25.65 16 21 Si 0.91 21.59 29.57 -169.99 -5.03 16.57 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.09 1.73 6.50 -3.07 -0.02 1.71 16 26 C 0.33 4.57 7.72 -17.12 -0.13 4.44 16 27 O -0.48 -5.90 12.62 -18.73 -0.24 -6.14 16 28 N -0.51 -7.10 10.30 -9.55 -0.10 -7.20 16 29 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.46 8.08 -51.93 -0.42 0.04 16 31 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 33 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 35 H 0.07 0.59 6.07 -51.93 -0.32 0.27 16 36 H 0.10 0.93 7.55 -51.93 -0.39 0.54 16 37 H 0.10 0.92 5.77 -51.93 -0.30 0.62 16 38 H 0.07 0.64 7.47 -51.93 -0.39 0.25 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.24 6.21 -51.93 -0.32 0.92 16 42 H 0.03 0.78 7.35 -51.93 -0.38 0.40 16 43 H 0.00 0.00 6.20 -51.93 -0.32 -0.32 16 44 H 0.05 1.26 7.09 -51.93 -0.37 0.89 16 45 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.07 1.62 7.01 -51.93 -0.36 1.26 16 47 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 48 H 0.40 2.53 9.06 45.56 0.41 2.94 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -36.13 385.76 -8.28 -44.41 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -6.50 Total: 1.18 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: -1.84 Total: 7.53 kcal Atomic # 7 Polarization: -57.45 SS G_CDS: -0.59 Total: -58.04 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.15 Total: -17.45 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.13 -8.28 -44.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972158451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.381 kcal (2) G-P(sol) polarization free energy of solvation -36.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds