Wall clock time and date at job start Tue Mar 31 2020 17:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38082 * 119.58310 * 2 1 4 4 C 1.38786 * 119.28632 * 179.74763 * 3 2 1 5 5 C 1.50703 * 120.75976 * 180.25533 * 4 3 2 6 6 C 1.38425 * 118.48720 * 0.49546 * 4 3 2 7 7 C 1.50697 * 120.44709 * 179.75870 * 6 4 3 8 8 C 1.50699 * 109.46807 * 269.72291 * 7 6 4 9 9 O 1.21284 * 120.00219 * 0.02562 * 8 7 6 10 10 N 1.34782 * 120.00054 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64255 * 359.96318 * 10 8 7 12 12 C 1.55125 * 104.93965 * 204.03379 * 11 10 8 13 13 C 1.55159 * 101.48536 * 323.22725 * 12 11 10 14 14 H 1.08999 * 110.71697 * 276.82741 * 13 12 11 15 15 N 1.46502 * 110.72058 * 153.73828 * 13 12 11 16 16 C 1.46506 * 119.99328 * 303.83667 * 15 13 12 17 17 C 1.36935 * 120.00407 * 123.83964 * 15 13 12 18 18 H 1.07994 * 119.99888 * 340.89948 * 17 15 13 19 19 C 1.38814 * 120.00022 * 160.62943 * 17 15 13 20 20 N 1.31615 * 119.99810 * 346.91220 * 19 17 15 21 21 Si 1.86794 * 119.99988 * 166.90823 * 19 17 15 22 22 H 1.48498 * 109.46968 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.46958 * 120.00017 * 21 19 17 24 24 H 1.48499 * 109.46987 * 240.00112 * 21 19 17 25 25 C 1.47017 * 125.64831 * 180.02562 * 10 8 7 26 26 C 1.38874 * 119.10881 * 359.48612 * 6 4 3 27 27 O 1.35676 * 119.68652 * 180.29671 * 26 6 4 28 28 N 1.31934 * 119.58178 * 179.97438 * 2 1 3 29 29 H 1.09001 * 109.46575 * 270.01949 * 1 2 3 30 30 H 1.09003 * 109.46975 * 30.01969 * 1 2 3 31 31 H 1.08997 * 109.46988 * 150.02082 * 1 2 3 32 32 H 1.08002 * 120.35849 * 0.02562 * 3 2 1 33 33 H 1.08999 * 109.47286 * 270.24519 * 5 4 3 34 34 H 1.09000 * 109.47259 * 30.24457 * 5 4 3 35 35 H 1.09000 * 109.47274 * 150.24318 * 5 4 3 36 36 H 1.08997 * 109.46990 * 149.72449 * 7 6 4 37 37 H 1.09004 * 109.47200 * 29.72072 * 7 6 4 38 38 H 1.08991 * 110.37127 * 322.99636 * 11 10 8 39 39 H 1.08999 * 110.36751 * 85.21481 * 11 10 8 40 40 H 1.08996 * 111.16602 * 205.13200 * 12 11 10 41 41 H 1.09005 * 110.93693 * 81.21514 * 12 11 10 42 42 H 1.09004 * 109.47049 * 264.81648 * 16 15 13 43 43 H 1.09000 * 109.47185 * 24.82282 * 16 15 13 44 44 H 1.09006 * 109.46698 * 144.82199 * 16 15 13 45 45 H 0.97003 * 120.00202 * 180.02562 * 20 19 17 46 46 H 1.08996 * 109.88722 * 59.49215 * 25 10 8 47 47 H 1.08997 * 109.88512 * 298.31783 * 25 10 8 48 48 H 0.96693 * 114.00137 * 89.99379 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1936 0.0053 5 6 4.3540 2.4846 0.0113 6 6 4.2305 -0.0264 0.0000 7 6 5.7364 -0.0857 -0.0001 8 6 6.2382 -0.1059 -1.4209 9 8 5.4506 -0.0748 -2.3427 10 7 7.5623 -0.1577 -1.6673 11 6 8.6251 -0.1978 -0.6464 12 6 9.8843 0.3634 -1.3578 13 6 9.7142 -0.2139 -2.7879 14 1 10.0896 -1.2360 -2.8383 15 7 10.3907 0.6337 -3.7729 16 6 10.0523 2.0557 -3.8709 17 6 11.3392 0.0968 -4.6019 18 1 11.8124 -0.8396 -4.3460 19 6 11.6885 0.7535 -5.7740 20 7 10.9433 1.7416 -6.2218 21 14 13.2160 0.2347 -6.7156 22 1 13.8754 -0.8916 -6.0072 23 1 12.8315 -0.1974 -8.0833 24 1 14.1558 1.3810 -6.8044 25 6 8.1858 -0.1821 -2.9984 26 6 3.4803 -1.1950 0.0004 27 8 4.1092 -2.3973 0.0013 28 7 2.1584 -1.1474 0.0005 29 1 -0.3632 0.0003 1.0277 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 1.6478 2.1356 0.0004 33 1 4.5417 2.8005 -1.0149 34 1 3.7790 3.2527 0.5284 35 1 5.3038 2.3345 0.5246 36 1 6.0644 -0.9891 0.5141 37 1 6.1345 0.7895 0.5134 38 1 8.3580 0.4290 0.2043 39 1 8.8001 -1.2233 -0.3211 40 1 10.7974 -0.0078 -0.8926 41 1 9.8702 1.4533 -1.3723 42 1 9.3048 2.1984 -4.6513 43 1 9.6525 2.4006 -2.9173 44 1 10.9480 2.6262 -4.1171 45 1 11.1871 2.2003 -7.0410 46 1 7.9067 0.7125 -3.5551 47 1 7.8679 -1.0727 -3.5404 48 1 4.2913 -2.7452 0.8848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972158451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:28 Heat of formation + Delta-G solvation = -39.685831 kcal Electronic energy + Delta-G solvation = -29040.813099 eV Core-core repulsion = 25095.783031 eV Total energy + Delta-G solvation = -3945.030068 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.93470 -40.83678 -38.90756 -38.29801 -36.55148 -35.78628 -33.54238 -32.90428 -31.64036 -30.93090 -29.41314 -28.63589 -28.09909 -26.93285 -25.04300 -23.91759 -23.57778 -21.96811 -20.88666 -20.19159 -19.38499 -18.97752 -18.28875 -18.17056 -17.43279 -16.92723 -16.64100 -16.30192 -15.98684 -15.65805 -15.06258 -15.05080 -14.89405 -14.51733 -14.47631 -14.23817 -14.00610 -13.87253 -13.82113 -13.61128 -13.29980 -13.21720 -13.12206 -12.86710 -12.81252 -12.77204 -12.51779 -12.47717 -12.42665 -12.38854 -12.20995 -12.06852 -11.78750 -11.41888 -11.03725 -10.65536 -10.44656 -10.38074 -9.64160 -9.62684 -8.86793 -7.84605 -5.31667 -0.02073 0.19987 1.46647 1.47631 1.58341 1.63569 1.98783 2.50113 2.57208 2.69275 3.27878 3.42848 3.56189 3.66863 3.68842 3.81392 3.86754 3.90564 4.14550 4.21686 4.27913 4.34530 4.39453 4.45967 4.48639 4.55190 4.63856 4.69705 4.71210 4.78773 4.80306 4.83716 4.90831 5.00190 5.03953 5.10711 5.21631 5.22534 5.25297 5.32598 5.34164 5.45189 5.62421 5.67102 5.71097 6.28638 6.58907 6.64042 6.97116 7.11258 7.17701 7.83260 8.26252 9.18987 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023484 B = 0.002435 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.019017 B =11497.579983 C =11667.044675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.134 3.866 3 C -0.186 4.186 4 C -0.021 4.021 5 C -0.119 4.119 6 C -0.154 4.154 7 C -0.076 4.076 8 C 0.523 3.477 9 O -0.595 6.595 10 N -0.613 5.613 11 C 0.103 3.897 12 C -0.139 4.139 13 C 0.164 3.836 14 H 0.080 0.920 15 N -0.604 5.604 16 C 0.183 3.817 17 C -0.261 4.261 18 H 0.081 0.919 19 C -0.059 4.059 20 N -0.943 5.943 21 Si 0.973 3.027 22 H -0.261 1.261 23 H -0.298 1.298 24 H -0.291 1.291 25 C 0.099 3.901 26 C 0.313 3.687 27 O -0.492 6.492 28 N -0.541 5.541 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.067 0.933 32 H 0.167 0.833 33 H 0.064 0.936 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.131 0.869 37 H 0.137 0.863 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.102 0.898 41 H 0.068 0.932 42 H -0.009 1.009 43 H 0.032 0.968 44 H 0.023 0.977 45 H 0.247 0.753 46 H 0.033 0.967 47 H 0.034 0.966 48 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.022 -0.439 23.685 27.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.206 4.206 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.158 4.158 7 C -0.115 4.115 8 C 0.314 3.686 9 O -0.476 6.476 10 N -0.347 5.347 11 C -0.018 4.018 12 C -0.179 4.179 13 C 0.056 3.944 14 H 0.099 0.901 15 N -0.325 5.325 16 C 0.038 3.962 17 C -0.391 4.391 18 H 0.099 0.901 19 C -0.254 4.254 20 N -0.590 5.590 21 Si 0.801 3.199 22 H -0.185 1.185 23 H -0.225 1.225 24 H -0.218 1.218 25 C -0.027 4.027 26 C 0.135 3.865 27 O -0.302 6.302 28 N -0.262 5.262 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.086 0.914 32 H 0.185 0.815 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.148 0.852 37 H 0.155 0.845 38 H 0.130 0.870 39 H 0.112 0.888 40 H 0.120 0.880 41 H 0.087 0.913 42 H 0.009 0.991 43 H 0.051 0.949 44 H 0.042 0.958 45 H 0.056 0.944 46 H 0.051 0.949 47 H 0.052 0.948 48 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -14.890 -1.091 22.489 26.994 hybrid contribution 1.115 0.288 -1.276 1.719 sum -13.775 -0.803 21.213 25.306 Atomic orbital electron populations 1.20824 0.86329 1.04181 1.04402 1.21601 0.98332 0.87112 0.93194 1.22148 0.93886 1.00251 1.04298 1.20478 0.94522 0.95475 0.92408 1.20961 1.00756 0.92882 1.02917 1.20332 0.96242 0.93056 1.06187 1.20485 0.90822 1.07887 0.92323 1.20913 0.80212 0.75225 0.92284 1.90700 1.55910 1.52337 1.48632 1.48614 1.05517 1.72096 1.08451 1.22656 0.85130 1.03141 0.90871 1.23259 0.98407 1.01273 0.94918 1.21578 0.87632 0.95123 0.90104 0.90139 1.44183 1.43561 1.05011 1.39757 1.20449 0.97336 0.83725 0.94682 1.19703 1.12706 1.06847 0.99846 0.90136 1.25825 1.02087 0.99558 0.97894 1.70296 1.39095 1.26840 1.22765 0.85112 0.79249 0.77694 0.77837 1.18514 1.22547 1.21753 1.22424 0.96302 0.99065 0.84887 1.19104 0.86943 0.85366 0.95126 1.84811 1.76493 1.33461 1.35440 1.66986 1.09971 1.32166 1.17077 0.88413 0.88431 0.91411 0.81524 0.91761 0.88098 0.89333 0.85154 0.84520 0.87017 0.88770 0.87995 0.91291 0.99116 0.94941 0.95844 0.94386 0.94895 0.94752 0.72304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.42 10.17 71.24 0.72 -0.69 16 2 C 0.13 2.97 6.78 42.51 0.29 3.25 16 3 C -0.19 -3.58 9.44 22.36 0.21 -3.37 16 4 C -0.02 -0.45 5.91 -19.69 -0.12 -0.57 16 5 C -0.12 -1.87 9.67 71.24 0.69 -1.18 16 6 C -0.15 -3.70 4.40 -19.67 -0.09 -3.79 16 7 C -0.08 -1.50 4.26 29.10 0.12 -1.38 16 8 C 0.52 16.66 7.84 87.66 0.69 17.35 16 9 O -0.60 -25.96 16.36 -3.04 -0.05 -26.01 16 10 N -0.61 -18.76 3.33 -811.39 -2.70 -21.46 16 11 C 0.10 2.08 6.69 86.93 0.58 2.66 16 12 C -0.14 -3.72 6.62 32.06 0.21 -3.51 16 13 C 0.16 6.27 3.43 46.18 0.16 6.43 16 14 H 0.08 3.01 7.91 -2.39 -0.02 3.00 16 15 N -0.60 -29.58 2.94 -696.12 -2.05 -31.62 16 16 C 0.18 9.10 7.68 127.77 0.98 10.08 16 17 C -0.26 -14.05 9.66 84.03 0.81 -13.24 16 18 H 0.08 4.11 7.81 -2.91 -0.02 4.09 16 19 C -0.06 -3.32 5.11 84.86 0.43 -2.88 16 20 N -0.94 -56.76 10.50 21.65 0.23 -56.53 16 21 Si 0.97 45.05 29.57 68.60 2.03 47.08 16 22 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 23 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 24 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 25 C 0.10 3.99 6.50 86.73 0.56 4.55 16 26 C 0.31 8.46 7.72 84.78 0.65 9.11 16 27 O -0.49 -11.93 12.62 -89.94 -1.14 -13.06 16 28 N -0.54 -15.03 10.30 -296.97 -3.06 -18.09 16 29 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.10 0.95 8.08 -2.39 -0.02 0.93 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.10 1.01 8.10 -2.39 -0.02 0.99 16 35 H 0.09 1.08 6.07 -2.39 -0.01 1.07 16 36 H 0.13 1.83 7.55 -2.39 -0.02 1.82 16 37 H 0.14 1.76 5.77 -2.38 -0.01 1.74 16 38 H 0.11 1.37 7.47 -2.39 -0.02 1.36 16 39 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.10 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.07 1.99 6.21 -2.38 -0.01 1.98 16 42 H -0.01 -0.54 7.35 -2.38 -0.02 -0.56 16 43 H 0.03 1.36 6.20 -2.39 -0.01 1.35 16 44 H 0.02 1.24 7.09 -2.38 -0.02 1.23 16 45 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 46 H 0.03 1.57 7.01 -2.39 -0.02 1.55 16 47 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 48 H 0.42 4.84 9.06 -74.06 -0.67 4.17 16 Total: -1.00 -84.99 385.76 0.50 -84.49 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: 0.31 Total: 12.37 kcal Atomic # 6 Polarization: 15.91 SS G_CDS: 6.92 Total: 22.83 kcal Atomic # 7 Polarization: -120.12 SS G_CDS: -7.58 Total: -127.70 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -1.19 Total: -39.07 kcal Atomic # 14 Polarization: 45.05 SS G_CDS: 2.03 Total: 47.08 kcal Total: -84.99 0.50 -84.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972158451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.808 kcal (2) G-P(sol) polarization free energy of solvation -84.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds