Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.35455 * 125.56522 * 2 1 4 4 C 1.39837 * 107.86312 * 179.97438 * 3 2 1 5 5 C 1.50700 * 126.45501 * 180.02562 * 4 3 2 6 6 C 1.37869 * 107.08805 * 0.02562 * 4 3 2 7 7 C 1.46678 * 126.23236 * 180.02562 * 6 4 3 8 8 O 1.21692 * 120.00247 * 6.34004 * 7 6 4 9 9 N 1.34776 * 119.99725 * 186.34219 * 7 6 4 10 10 C 1.47876 * 125.87914 * 5.35870 * 9 7 6 11 11 C 1.55024 * 104.91395 * 155.90452 * 10 9 7 12 12 C 1.54494 * 101.53129 * 36.47139 * 11 10 9 13 13 C 1.47185 * 125.66310 * 185.43842 * 9 7 6 14 14 C 1.52521 * 110.09211 * 206.96848 * 12 11 10 15 15 N 1.47313 * 108.39574 * 186.96554 * 14 12 11 16 16 C 1.36940 * 121.06562 * 229.37336 * 15 14 12 17 17 H 1.08002 * 119.99766 * 153.74328 * 16 15 14 18 18 C 1.38806 * 120.00065 * 333.75247 * 16 15 14 19 19 N 1.31621 * 120.00308 * 344.04185 * 18 16 15 20 20 Si 1.86801 * 120.00190 * 164.04869 * 18 16 15 21 21 H 1.48510 * 109.47184 * 89.99466 * 20 18 16 22 22 H 1.48500 * 109.47520 * 209.99627 * 20 18 16 23 23 H 1.48497 * 109.46984 * 329.99702 * 20 18 16 24 24 C 1.47163 * 117.86555 * 49.39770 * 15 14 12 25 25 C 1.53273 * 108.55146 * 308.86699 * 24 15 14 26 26 O 1.42068 * 110.38353 * 83.93665 * 12 11 10 27 27 N 1.35538 * 125.56396 * 180.27501 * 2 1 3 28 28 H 0.97000 * 125.67876 * 0.06470 * 27 2 1 29 29 H 1.08999 * 109.47799 * 90.02158 * 1 2 3 30 30 H 1.09001 * 109.47472 * 210.02642 * 1 2 3 31 31 H 1.09004 * 109.46725 * 330.02058 * 1 2 3 32 32 H 1.07997 * 126.06952 * 359.92929 * 3 2 1 33 33 H 1.09001 * 109.47672 * 269.96048 * 5 4 3 34 34 H 1.09006 * 109.47475 * 29.96318 * 5 4 3 35 35 H 1.09008 * 109.46990 * 149.95830 * 5 4 3 36 36 H 1.09006 * 110.25941 * 37.09264 * 10 9 7 37 37 H 1.09003 * 110.43792 * 274.81328 * 10 9 7 38 38 H 1.09003 * 111.01682 * 278.40951 * 11 10 9 39 39 H 1.09002 * 111.04625 * 154.54468 * 11 10 9 40 40 H 1.09006 * 109.91148 * 62.13884 * 13 9 7 41 41 H 1.08999 * 109.90716 * 301.06147 * 13 9 7 42 42 H 1.08999 * 109.68215 * 306.69151 * 14 12 11 43 43 H 1.09000 * 109.68071 * 67.20324 * 14 12 11 44 44 H 0.96997 * 120.00565 * 180.02562 * 19 18 16 45 45 H 1.09003 * 109.62448 * 68.58850 * 24 15 14 46 46 H 1.08998 * 109.61946 * 188.95871 * 24 15 14 47 47 H 1.09003 * 109.51497 * 172.82392 * 25 24 15 48 48 H 1.09000 * 109.51275 * 292.97352 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 3.6269 0.6767 0.0006 5 6 4.8486 1.5591 0.0014 6 6 3.6122 -0.7019 0.0004 7 6 4.7860 -1.5815 0.0013 8 8 5.9009 -1.1083 0.1188 9 7 4.6296 -2.9139 -0.1280 10 6 3.3545 -3.6156 -0.3893 11 6 3.7651 -4.9571 -1.0489 12 6 5.0647 -5.2924 -0.2837 13 6 5.7022 -3.9172 -0.0308 14 6 5.9769 -6.1528 -1.1520 15 7 7.1214 -6.5893 -0.3337 16 6 8.4067 -6.4508 -0.7854 17 1 9.2202 -6.3617 -0.0806 18 6 8.6640 -6.4246 -2.1492 19 7 7.7493 -6.8399 -2.9996 20 14 10.3086 -5.8003 -2.7777 21 1 11.2651 -6.9325 -2.8707 22 1 10.1274 -5.1938 -4.1210 23 1 10.8409 -4.7784 -1.8409 24 6 6.8392 -7.1794 0.9846 25 6 5.9065 -6.2356 1.7518 26 8 4.7630 -5.9428 0.9428 27 7 2.2952 -1.1025 -0.0053 28 1 1.9833 -2.0210 -0.0106 29 1 -0.3635 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 1.9545 2.1268 -0.0011 33 1 5.1441 1.7715 -1.0261 34 1 4.6215 2.4936 0.5147 35 1 5.6638 1.0506 0.5162 36 1 2.7353 -3.0321 -1.0707 37 1 2.8228 -3.7993 0.5444 38 1 3.9610 -4.8257 -2.1131 39 1 3.0065 -5.7224 -0.8848 40 1 6.1458 -3.8912 0.9645 41 1 6.4658 -3.7181 -0.7827 42 1 5.4282 -7.0239 -1.5100 43 1 6.3332 -5.5692 -2.0008 44 1 7.9292 -6.8220 -3.9526 45 1 6.3555 -8.1477 0.8562 46 1 7.7709 -7.3059 1.5360 47 1 5.5850 -6.7140 2.6770 48 1 6.4347 -5.3108 1.9838 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972437427.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = -17.885032 kcal Electronic energy + Delta-G solvation = -30163.257224 eV Core-core repulsion = 26219.172510 eV Total energy + Delta-G solvation = -3944.084714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.58939 -41.38371 -39.76165 -37.69182 -36.32980 -33.86102 -33.42680 -33.21381 -32.24798 -30.61709 -29.46488 -28.61291 -28.17657 -26.68577 -25.07759 -24.61010 -22.79736 -22.08180 -21.33012 -20.39747 -20.06922 -19.03451 -18.63718 -17.88489 -17.11535 -16.97182 -16.61839 -16.19366 -16.02353 -15.71312 -15.65710 -15.22604 -15.12578 -14.73756 -14.62474 -14.38822 -14.18641 -13.93220 -13.86581 -13.63491 -13.46657 -13.36687 -13.09781 -13.02543 -12.93510 -12.89469 -12.77810 -12.54925 -12.42515 -12.40729 -12.23053 -12.20317 -11.83296 -11.22835 -11.12560 -10.83401 -10.56277 -9.95435 -9.71059 -8.97899 -8.76673 -7.95804 -5.40617 0.37951 1.39394 1.43102 1.51298 1.71110 1.72173 2.15239 2.25467 2.42328 2.69520 3.18124 3.29298 3.38164 3.57652 3.76491 3.89169 3.96912 4.08399 4.16899 4.19686 4.20736 4.29831 4.31088 4.45129 4.57194 4.65043 4.68306 4.69794 4.80510 4.82237 4.84125 4.86943 4.87551 4.92611 4.99107 5.03549 5.09802 5.17878 5.19364 5.23523 5.45985 5.46622 5.56592 5.82458 5.95413 6.23145 6.29153 6.36177 6.51075 6.97066 7.03046 7.71081 8.23879 9.10249 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014744 B = 0.003563 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.590261 B = 7857.583515 C = 8793.349782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.069 3.931 3 C -0.223 4.223 4 C -0.086 4.086 5 C -0.090 4.090 6 C -0.085 4.085 7 C 0.592 3.408 8 O -0.575 6.575 9 N -0.619 5.619 10 C 0.095 3.905 11 C -0.108 4.108 12 C 0.095 3.905 13 C 0.111 3.889 14 C 0.174 3.826 15 N -0.615 5.615 16 C -0.262 4.262 17 H 0.067 0.933 18 C -0.044 4.044 19 N -0.930 5.930 20 Si 0.959 3.041 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.277 1.277 24 C 0.105 3.895 25 C 0.050 3.950 26 O -0.369 6.369 27 N -0.533 5.533 28 H 0.425 0.575 29 H 0.091 0.909 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.122 0.878 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.014 0.986 43 H 0.063 0.937 44 H 0.252 0.748 45 H 0.027 0.973 46 H 0.069 0.931 47 H 0.126 0.874 48 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.683 11.376 6.914 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.050 4.050 3 C -0.246 4.246 4 C -0.095 4.095 5 C -0.147 4.147 6 C -0.197 4.197 7 C 0.385 3.615 8 O -0.456 6.456 9 N -0.352 5.352 10 C -0.026 4.026 11 C -0.146 4.146 12 C 0.053 3.947 13 C -0.012 4.012 14 C 0.047 3.953 15 N -0.339 5.339 16 C -0.392 4.392 17 H 0.084 0.916 18 C -0.240 4.240 19 N -0.576 5.576 20 Si 0.787 3.213 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.203 1.203 24 C -0.020 4.020 25 C -0.028 4.028 26 O -0.288 6.288 27 N -0.135 5.135 28 H 0.270 0.730 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.182 0.818 33 H 0.082 0.918 34 H 0.104 0.896 35 H 0.072 0.928 36 H 0.116 0.884 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.140 0.860 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.032 0.968 43 H 0.082 0.918 44 H 0.061 0.939 45 H 0.045 0.955 46 H 0.087 0.913 47 H 0.144 0.856 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -19.244 11.426 6.883 23.415 hybrid contribution 1.890 -0.501 -0.730 2.087 sum -17.354 10.925 6.153 21.410 Atomic orbital electron populations 1.20595 0.84264 1.05209 1.04468 1.21265 0.95475 0.85434 1.02820 1.20864 0.90509 0.99577 1.13679 1.20245 0.96892 0.90905 1.01471 1.20330 0.94109 0.98265 1.02040 1.19752 0.83249 0.93819 1.22854 1.17220 0.87965 0.80108 0.76231 1.90776 1.26609 1.74944 1.53225 1.48651 1.10797 1.04795 1.70958 1.22813 0.85494 0.92999 1.01322 1.22738 0.95805 0.96870 0.99236 1.22416 0.96424 0.89446 0.86442 1.22132 0.90176 0.88199 1.00735 1.21001 0.86627 0.94979 0.92643 1.44373 1.02477 1.70531 1.16561 1.19438 0.85188 1.43820 0.90764 0.91560 1.25665 1.00671 1.00735 0.96900 1.70113 1.35865 1.49951 1.01670 0.85410 0.80340 0.78266 0.77312 1.20566 1.21757 1.20266 1.21766 0.98352 0.94849 0.87034 1.23154 0.87511 0.98101 0.94018 1.87665 1.32008 1.78321 1.30820 1.42501 1.04271 1.09779 1.56949 0.73048 0.89054 0.89962 0.88111 0.81784 0.91753 0.89606 0.92845 0.88444 0.88500 0.89156 0.86014 0.92558 0.93873 0.96770 0.91824 0.93917 0.95534 0.91285 0.85624 0.94172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.61 10.41 71.23 0.74 0.13 16 2 C 0.07 1.13 7.13 41.34 0.29 1.42 16 3 C -0.22 -4.43 10.66 22.01 0.23 -4.19 16 4 C -0.09 -2.34 6.21 -19.56 -0.12 -2.46 16 5 C -0.09 -2.42 9.90 71.24 0.71 -1.71 16 6 C -0.09 -2.48 6.83 40.35 0.28 -2.20 16 7 C 0.59 21.78 7.81 86.45 0.68 22.45 16 8 O -0.58 -25.79 15.12 -4.32 -0.07 -25.85 16 9 N -0.62 -20.90 3.35 -815.95 -2.73 -23.63 16 10 C 0.10 2.23 5.28 86.81 0.46 2.69 16 11 C -0.11 -2.96 6.21 31.80 0.20 -2.77 16 12 C 0.09 3.51 0.81 -10.22 -0.01 3.50 16 13 C 0.11 4.46 5.95 86.47 0.51 4.98 16 14 C 0.17 8.21 3.97 86.07 0.34 8.55 16 15 N -0.61 -30.86 2.97 -698.63 -2.08 -32.94 16 16 C -0.26 -14.57 9.66 84.03 0.81 -13.75 16 17 H 0.07 3.62 7.88 -2.91 -0.02 3.60 16 18 C -0.04 -2.47 4.97 84.86 0.42 -2.05 16 19 N -0.93 -54.44 11.11 21.65 0.24 -54.20 16 20 Si 0.96 46.09 29.58 68.60 2.03 48.12 16 21 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 C 0.11 4.29 6.72 86.34 0.58 4.87 16 25 C 0.05 1.67 6.76 72.07 0.49 2.16 16 26 O -0.37 -12.92 10.26 -148.97 -1.53 -14.44 16 27 N -0.53 -10.64 5.38 -171.93 -0.93 -11.57 16 28 H 0.43 6.41 5.33 -92.71 -0.49 5.92 16 29 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.16 2.37 8.06 -2.91 -0.02 2.34 16 33 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 35 H 0.05 1.74 6.38 -2.38 -0.02 1.73 16 36 H 0.10 1.75 6.18 -2.38 -0.01 1.74 16 37 H 0.10 1.84 7.88 -2.39 -0.02 1.82 16 38 H 0.09 2.56 8.01 -2.39 -0.02 2.54 16 39 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.06 2.40 6.00 -2.38 -0.01 2.39 16 41 H 0.04 2.08 7.61 -2.39 -0.02 2.07 16 42 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.06 3.43 5.92 -2.39 -0.01 3.42 16 44 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 45 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 47 H 0.13 3.25 8.14 -2.39 -0.02 3.23 16 48 H 0.04 1.44 6.22 -2.39 -0.01 1.43 16 Total: -1.00 -75.58 373.39 2.04 -73.54 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: 0.49 Total: 19.35 kcal Atomic # 6 Polarization: 15.01 SS G_CDS: 6.61 Total: 21.62 kcal Atomic # 7 Polarization: -116.84 SS G_CDS: -5.49 Total: -122.33 kcal Atomic # 8 Polarization: -38.70 SS G_CDS: -1.59 Total: -40.30 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.12 kcal Total: -75.58 2.04 -73.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972437427.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.657 kcal (2) G-P(sol) polarization free energy of solvation -75.583 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds