Wall clock time and date at job start Tue Mar 31 2020 17:58:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35922 * 117.00144 * 2 1 4 4 C 1.38856 * 120.40524 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99865 * 179.97438 * 4 3 2 6 6 C 1.31676 * 121.94655 * 359.97438 * 5 4 3 7 7 C 1.39530 * 120.68753 * 359.97438 * 6 5 4 8 8 C 1.47862 * 120.52933 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99549 * 173.59741 * 8 7 6 10 10 N 1.34773 * 119.99827 * 353.32185 * 8 7 6 11 11 C 1.46501 * 119.99521 * 180.27335 * 10 8 7 12 12 H 1.08992 * 110.88755 * 325.70315 * 11 10 8 13 13 C 1.54911 * 111.00434 * 89.58537 * 11 10 8 14 14 N 1.47523 * 104.78558 * 81.08255 * 13 11 10 15 15 C 1.36944 * 125.63584 * 204.08630 * 14 13 11 16 16 H 1.08000 * 119.99623 * 166.13085 * 15 14 13 17 17 C 1.38811 * 120.00019 * 346.12784 * 15 14 13 18 18 N 1.31620 * 119.99746 * 352.45299 * 17 15 14 19 19 Si 1.86804 * 119.99866 * 172.45043 * 17 15 14 20 20 H 1.48495 * 109.47031 * 85.01441 * 19 17 15 21 21 H 1.48496 * 109.47066 * 205.02010 * 19 17 15 22 22 H 1.48503 * 109.46704 * 325.01549 * 19 17 15 23 23 C 1.47023 * 108.71552 * 24.12065 * 14 13 11 24 24 C 1.54322 * 107.26914 * 358.94099 * 23 14 13 25 25 C 1.53000 * 110.71954 * 219.44052 * 24 23 14 26 26 C 1.53001 * 110.71845 * 96.17064 * 24 23 14 27 27 C 1.38843 * 120.40810 * 180.25916 * 3 2 1 28 28 C 1.50699 * 120.87920 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47319 * 299.99321 * 1 2 3 30 30 H 1.09001 * 109.47712 * 59.99698 * 1 2 3 31 31 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.49720 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.65786 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00228 * 0.27192 * 10 8 7 35 35 H 1.08997 * 110.36850 * 199.90554 * 13 11 10 36 36 H 1.09011 * 110.36187 * 322.22402 * 13 11 10 37 37 H 0.97004 * 119.99618 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.88370 * 239.52079 * 23 14 13 39 39 H 1.09006 * 110.00865 * 118.43133 * 23 14 13 40 40 H 1.08997 * 109.47066 * 173.52462 * 25 24 23 41 41 H 1.08999 * 109.47054 * 293.52496 * 25 24 23 42 42 H 1.08994 * 109.46846 * 53.52401 * 25 24 23 43 43 H 1.08996 * 109.47285 * 306.47507 * 26 24 23 44 44 H 1.09005 * 109.47274 * 66.47540 * 26 24 23 45 45 H 1.09007 * 109.47213 * 186.47682 * 26 24 23 46 46 H 1.08997 * 109.47581 * 263.61398 * 28 27 3 47 47 H 1.09004 * 109.46989 * 23.61565 * 28 27 3 48 48 H 1.08997 * 109.47286 * 143.61090 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6892 0.0016 7 6 4.0198 2.5636 0.0021 8 6 5.4911 2.7104 0.0022 9 8 6.1996 1.7298 0.1201 10 7 6.0465 3.9308 -0.1341 11 6 7.5044 4.0754 -0.1401 12 1 7.9698 3.3477 0.5246 13 6 8.0684 3.9547 -1.5778 14 7 7.8620 5.2871 -2.1763 15 6 7.7618 5.5532 -3.5159 16 1 7.3916 6.5112 -3.8499 17 6 8.1363 4.5917 -4.4444 18 7 8.7248 3.4845 -4.0443 19 14 7.8048 4.8692 -6.2618 20 1 8.9119 5.6643 -6.8510 21 1 7.7134 3.5587 -6.9540 22 1 6.5254 5.6054 -6.4247 23 6 7.7823 6.2820 -1.0968 24 6 7.9212 5.5211 0.2386 25 6 6.9742 6.0993 1.2921 26 6 9.3688 5.5552 0.7329 27 6 3.4320 1.2936 -0.0054 28 6 4.2809 0.0484 -0.0120 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2196 2.3226 0.0014 33 1 3.6365 4.6748 0.0016 34 1 5.4811 4.7132 -0.2282 35 1 9.1306 3.7119 -1.5494 36 1 7.5201 3.1972 -2.1380 37 1 8.9861 2.8124 -4.6931 38 1 6.8203 6.7932 -1.1339 39 1 8.5908 7.0063 -1.1967 40 1 7.0041 5.4783 2.1874 41 1 7.2852 7.1134 1.5428 42 1 5.9587 6.1179 0.8966 43 1 10.0301 5.1928 -0.0541 44 1 9.6400 6.5784 0.9929 45 1 9.4676 4.9185 1.6122 46 1 4.5842 -0.1900 1.0074 47 1 3.7059 -0.7812 -0.4234 48 1 5.1666 0.2158 -0.6248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974727447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:56 Heat of formation + Delta-G solvation = -8.923753 kcal Electronic energy + Delta-G solvation = -29873.828474 eV Core-core repulsion = 25930.132350 eV Total energy + Delta-G solvation = -3943.696124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.07361 -39.69069 -38.38938 -37.62941 -34.03788 -33.60780 -33.15931 -30.88358 -30.65655 -28.30907 -27.88225 -27.65121 -26.70666 -25.62717 -24.21020 -23.15415 -22.28792 -20.81332 -19.98566 -18.90287 -18.09468 -17.50662 -16.66488 -16.46496 -16.34523 -16.18554 -15.61878 -14.90142 -14.55837 -14.39398 -14.10694 -13.82322 -13.77642 -13.51870 -13.16746 -13.03198 -12.79493 -12.71526 -12.63483 -12.26990 -12.12789 -11.94757 -11.86526 -11.70855 -11.68559 -11.35921 -11.26413 -10.87680 -10.76853 -10.39808 -10.23012 -10.05351 -9.94128 -9.90413 -9.71713 -9.50651 -9.20187 -8.59682 -8.58222 -8.45624 -6.74925 -5.73055 -3.07868 0.58471 1.12218 2.83565 3.03780 3.40213 3.45758 3.47443 3.52180 3.82766 4.21405 4.38322 4.50043 4.64633 4.69282 4.82766 4.84992 4.93997 5.11402 5.13219 5.23099 5.23450 5.27123 5.51630 5.53309 5.61774 5.73038 5.77191 5.87640 5.88199 6.00388 6.09096 6.11817 6.16972 6.18346 6.24173 6.37524 6.51081 6.53448 6.58487 6.70681 6.73183 6.95342 6.96414 7.50035 7.56971 7.71864 7.78725 7.88764 8.27982 8.53823 9.19736 9.82185 10.49991 11.39507 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.003902 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.812145 B = 7174.879444 C = 8428.300114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.306 6.306 3 C 0.063 3.937 4 C 0.036 3.964 5 N -0.458 5.458 6 C 0.102 3.898 7 C -0.145 4.145 8 C 0.561 3.439 9 O -0.528 6.528 10 N -0.694 5.694 11 C 0.122 3.878 12 H 0.091 0.909 13 C 0.171 3.829 14 N -0.599 5.599 15 C -0.233 4.233 16 H 0.074 0.926 17 C -0.002 4.002 18 N -0.913 5.913 19 Si 0.908 3.092 20 H -0.288 1.288 21 H -0.290 1.290 22 H -0.282 1.282 23 C 0.141 3.859 24 C -0.086 4.086 25 C -0.132 4.132 26 C -0.129 4.129 27 C -0.012 4.012 28 C -0.113 4.113 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.103 0.897 32 H 0.160 0.840 33 H 0.160 0.840 34 H 0.396 0.604 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.253 0.747 38 H 0.021 0.979 39 H 0.025 0.975 40 H 0.054 0.946 41 H 0.055 0.945 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.054 0.946 45 H 0.050 0.950 46 H 0.079 0.921 47 H 0.065 0.935 48 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.235 -2.517 12.787 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.218 6.218 3 C 0.016 3.984 4 C -0.122 4.122 5 N -0.167 5.167 6 C -0.057 4.057 7 C -0.150 4.150 8 C 0.346 3.654 9 O -0.406 6.406 10 N -0.344 5.344 11 C 0.017 3.983 12 H 0.109 0.891 13 C 0.045 3.955 14 N -0.325 5.325 15 C -0.361 4.361 16 H 0.091 0.909 17 C -0.200 4.200 18 N -0.559 5.559 19 Si 0.738 3.262 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.208 1.208 23 C 0.016 3.984 24 C -0.087 4.087 25 C -0.189 4.189 26 C -0.186 4.186 27 C -0.021 4.021 28 C -0.169 4.169 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.121 0.879 32 H 0.177 0.823 33 H 0.178 0.822 34 H 0.232 0.768 35 H 0.057 0.943 36 H 0.087 0.913 37 H 0.064 0.936 38 H 0.039 0.961 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.097 0.903 47 H 0.084 0.916 48 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -13.104 -2.788 12.659 18.432 hybrid contribution -0.259 0.012 -1.198 1.225 sum -13.363 -2.777 11.461 17.823 Atomic orbital electron populations 1.23124 0.78140 1.04368 1.01513 1.86095 1.21380 1.25618 1.88708 1.19758 0.92361 0.85966 1.00343 1.23015 1.00542 0.87145 1.01454 1.67505 1.11932 1.25933 1.11314 1.22829 0.88671 0.98189 0.96006 1.20845 0.95305 0.93632 1.05223 1.17784 0.86351 0.83795 0.77425 1.90731 1.62913 1.37177 1.49811 1.45758 1.08349 1.07985 1.72341 1.22614 0.78721 0.95832 1.01095 0.89123 1.21747 0.98009 0.88764 0.86986 1.44430 1.85674 1.01400 1.01008 1.18931 1.36579 1.00526 0.80088 0.90862 1.24856 0.99731 0.97465 0.97920 1.69928 1.44115 1.09159 1.32736 0.86218 0.77942 0.76871 0.85169 1.21470 1.21655 1.20770 1.21431 0.97870 0.92399 0.86743 1.21829 0.95972 0.95137 0.95755 1.21728 0.98581 1.00513 0.98108 1.21692 0.94834 1.01248 1.00861 1.19853 0.90694 0.96047 0.95467 1.20912 0.99705 0.92365 1.03883 0.92449 0.92385 0.87876 0.82299 0.82246 0.76776 0.94316 0.91289 0.93636 0.96104 0.95692 0.92738 0.92555 0.93050 0.91555 0.92649 0.93054 0.90298 0.91635 0.88042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 101.05 0.99 1.14 16 2 O -0.31 -3.40 9.57 -19.49 -0.19 -3.58 16 3 C 0.06 0.81 6.68 -39.13 -0.26 0.55 16 4 C 0.04 0.42 10.21 -17.30 -0.18 0.25 16 5 N -0.46 -6.23 10.34 -12.80 -0.13 -6.36 16 6 C 0.10 1.41 10.69 -17.14 -0.18 1.23 16 7 C -0.14 -2.23 5.89 -104.84 -0.62 -2.85 16 8 C 0.56 9.83 7.72 -12.32 -0.10 9.73 16 9 O -0.53 -10.57 13.22 5.33 0.07 -10.50 16 10 N -0.69 -11.63 4.57 -52.67 -0.24 -11.87 16 11 C 0.12 2.25 2.61 -65.78 -0.17 2.08 16 12 H 0.09 1.69 7.53 -51.93 -0.39 1.30 16 13 C 0.17 4.07 4.77 -2.47 -0.01 4.06 16 14 N -0.60 -14.69 3.40 -169.99 -0.58 -15.27 16 15 C -0.23 -6.39 10.22 -15.06 -0.15 -6.54 16 16 H 0.07 1.96 7.84 -52.49 -0.41 1.54 16 17 C 0.00 -0.06 5.41 -17.43 -0.09 -0.16 16 18 N -0.91 -26.97 10.77 55.49 0.60 -26.37 16 19 Si 0.91 22.22 29.56 -169.99 -5.02 17.19 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C 0.14 2.77 6.41 -3.06 -0.02 2.75 16 24 C -0.09 -1.37 0.80 -152.67 -0.12 -1.49 16 25 C -0.13 -1.65 8.07 37.16 0.30 -1.35 16 26 C -0.13 -1.90 8.41 37.16 0.31 -1.59 16 27 C -0.01 -0.17 5.97 -103.76 -0.62 -0.79 16 28 C -0.11 -1.63 8.67 36.01 0.31 -1.32 16 29 H 0.06 0.30 7.67 -51.93 -0.40 -0.10 16 30 H 0.06 0.33 7.68 -51.93 -0.40 -0.07 16 31 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.16 1.35 6.30 -52.48 -0.33 1.02 16 33 H 0.16 1.88 6.47 -52.49 -0.34 1.54 16 34 H 0.40 5.92 5.13 -40.82 -0.21 5.71 16 35 H 0.04 1.02 7.66 -51.93 -0.40 0.62 16 36 H 0.07 1.92 7.14 -51.92 -0.37 1.55 16 37 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.02 0.40 7.76 -51.93 -0.40 -0.01 16 39 H 0.03 0.50 7.85 -51.93 -0.41 0.10 16 40 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.61 6.42 -51.93 -0.33 0.28 16 43 H 0.07 1.13 7.57 -51.93 -0.39 0.74 16 44 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 47 H 0.06 0.86 7.44 -51.93 -0.39 0.47 16 48 H 0.10 1.72 6.00 -51.93 -0.31 1.41 16 LS Contribution 378.73 15.07 5.71 5.71 Total: -1.00 -32.78 378.73 -7.55 -40.33 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -7.15 Total: 5.03 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: -0.61 Total: 5.69 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -0.35 Total: -59.87 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: -0.12 Total: -14.08 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.78 -7.55 -40.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974727447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.408 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds