Wall clock time and date at job start Tue Mar 31 2020 17:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42891 * 1 3 3 C 1.35922 * 117.00144 * 2 1 4 4 C 1.38856 * 120.40524 * 0.02562 * 3 2 1 5 5 N 1.31878 * 120.99865 * 179.97438 * 4 3 2 6 6 C 1.31676 * 121.94655 * 359.97438 * 5 4 3 7 7 C 1.39530 * 120.68753 * 359.97438 * 6 5 4 8 8 C 1.47862 * 120.52933 * 179.97438 * 7 6 5 9 9 O 1.21546 * 119.99549 * 173.59741 * 8 7 6 10 10 N 1.34773 * 119.99827 * 353.32185 * 8 7 6 11 11 C 1.46501 * 119.99521 * 180.27335 * 10 8 7 12 12 H 1.08992 * 110.88755 * 325.70315 * 11 10 8 13 13 C 1.54911 * 111.00434 * 89.58537 * 11 10 8 14 14 N 1.47523 * 104.78558 * 81.08255 * 13 11 10 15 15 C 1.36944 * 125.63584 * 204.08630 * 14 13 11 16 16 H 1.08000 * 119.99623 * 166.13085 * 15 14 13 17 17 C 1.38811 * 120.00019 * 346.12784 * 15 14 13 18 18 N 1.31620 * 119.99746 * 352.45299 * 17 15 14 19 19 Si 1.86804 * 119.99866 * 172.45043 * 17 15 14 20 20 H 1.48495 * 109.47031 * 85.01441 * 19 17 15 21 21 H 1.48496 * 109.47066 * 205.02010 * 19 17 15 22 22 H 1.48503 * 109.46704 * 325.01549 * 19 17 15 23 23 C 1.47023 * 108.71552 * 24.12065 * 14 13 11 24 24 C 1.54322 * 107.26914 * 358.94099 * 23 14 13 25 25 C 1.53000 * 110.71954 * 219.44052 * 24 23 14 26 26 C 1.53001 * 110.71845 * 96.17064 * 24 23 14 27 27 C 1.38843 * 120.40810 * 180.25916 * 3 2 1 28 28 C 1.50699 * 120.87920 * 0.02562 * 27 3 2 29 29 H 1.08998 * 109.47319 * 299.99321 * 1 2 3 30 30 H 1.09001 * 109.47712 * 59.99698 * 1 2 3 31 31 H 1.09001 * 109.47495 * 179.97438 * 1 2 3 32 32 H 1.08003 * 119.49720 * 0.02562 * 4 3 2 33 33 H 1.07993 * 119.65786 * 179.97438 * 6 5 4 34 34 H 0.96998 * 120.00228 * 0.27192 * 10 8 7 35 35 H 1.08997 * 110.36850 * 199.90554 * 13 11 10 36 36 H 1.09011 * 110.36187 * 322.22402 * 13 11 10 37 37 H 0.97004 * 119.99618 * 179.97438 * 18 17 15 38 38 H 1.08997 * 109.88370 * 239.52079 * 23 14 13 39 39 H 1.09006 * 110.00865 * 118.43133 * 23 14 13 40 40 H 1.08997 * 109.47066 * 173.52462 * 25 24 23 41 41 H 1.08999 * 109.47054 * 293.52496 * 25 24 23 42 42 H 1.08994 * 109.46846 * 53.52401 * 25 24 23 43 43 H 1.08996 * 109.47285 * 306.47507 * 26 24 23 44 44 H 1.09005 * 109.47274 * 66.47540 * 26 24 23 45 45 H 1.09007 * 109.47213 * 186.47682 * 26 24 23 46 46 H 1.08997 * 109.47581 * 263.61398 * 28 27 3 47 47 H 1.09004 * 109.46989 * 23.61565 * 28 27 3 48 48 H 1.08997 * 109.47286 * 143.61090 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2980 2.3809 0.0005 5 7 1.8846 3.5621 0.0010 6 6 3.1952 3.6892 0.0016 7 6 4.0198 2.5636 0.0021 8 6 5.4911 2.7104 0.0022 9 8 6.1996 1.7298 0.1201 10 7 6.0465 3.9308 -0.1341 11 6 7.5044 4.0754 -0.1401 12 1 7.9698 3.3477 0.5246 13 6 8.0684 3.9547 -1.5778 14 7 7.8620 5.2871 -2.1763 15 6 7.7618 5.5532 -3.5159 16 1 7.3916 6.5112 -3.8499 17 6 8.1363 4.5917 -4.4444 18 7 8.7248 3.4845 -4.0443 19 14 7.8048 4.8692 -6.2618 20 1 8.9119 5.6643 -6.8510 21 1 7.7134 3.5587 -6.9540 22 1 6.5254 5.6054 -6.4247 23 6 7.7823 6.2820 -1.0968 24 6 7.9212 5.5211 0.2386 25 6 6.9742 6.0993 1.2921 26 6 9.3688 5.5552 0.7329 27 6 3.4320 1.2936 -0.0054 28 6 4.2809 0.0484 -0.0120 29 1 -0.3634 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 0.2196 2.3226 0.0014 33 1 3.6365 4.6748 0.0016 34 1 5.4811 4.7132 -0.2282 35 1 9.1306 3.7119 -1.5494 36 1 7.5201 3.1972 -2.1380 37 1 8.9861 2.8124 -4.6931 38 1 6.8203 6.7932 -1.1339 39 1 8.5908 7.0063 -1.1967 40 1 7.0041 5.4783 2.1874 41 1 7.2852 7.1134 1.5428 42 1 5.9587 6.1179 0.8966 43 1 10.0301 5.1928 -0.0541 44 1 9.6400 6.5784 0.9929 45 1 9.4676 4.9185 1.6122 46 1 4.5842 -0.1900 1.0074 47 1 3.7059 -0.7812 -0.4234 48 1 5.1666 0.2158 -0.6248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974727447.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:55 Heat of formation + Delta-G solvation = -31.126469 kcal Electronic energy + Delta-G solvation = -29874.791256 eV Core-core repulsion = 25930.132350 eV Total energy + Delta-G solvation = -3944.658906 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.14928 -41.02137 -39.60391 -38.81268 -35.72449 -34.88685 -34.55198 -32.63933 -31.89851 -29.80383 -28.88164 -28.48010 -27.93688 -27.40528 -25.54542 -24.56179 -23.40779 -22.37468 -21.52710 -20.24406 -19.21874 -18.69163 -18.48705 -17.65267 -17.38066 -17.00362 -16.99312 -16.65413 -16.04203 -15.71706 -15.42508 -15.18732 -15.10323 -14.72190 -14.59056 -14.15938 -13.98878 -13.83993 -13.78798 -13.69560 -13.57246 -13.18972 -13.16698 -12.95277 -12.78774 -12.71819 -12.61481 -12.56940 -12.36159 -12.11937 -11.83161 -11.73967 -11.54267 -11.34468 -11.15639 -10.70018 -10.65950 -10.42863 -9.97205 -9.52991 -8.79055 -7.87118 -5.23247 -0.50143 0.07988 1.43044 1.45013 1.53121 1.74058 1.94277 2.34589 2.48406 2.69200 3.25779 3.33079 3.41788 3.55833 3.61873 3.64619 3.70007 3.97211 4.01819 4.09343 4.10890 4.36048 4.41173 4.41813 4.50495 4.52899 4.63110 4.70528 4.75743 4.77272 4.86278 4.90242 4.95850 5.01747 5.04841 5.12755 5.15692 5.20600 5.29795 5.36730 5.41183 5.48498 5.56175 5.68693 5.70169 6.14200 6.20904 6.51528 6.70497 7.07511 7.18086 7.77554 8.44701 9.24010 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010910 B = 0.003902 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.812145 B = 7174.879444 C = 8428.300114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.069 3.931 4 C 0.046 3.954 5 N -0.466 5.466 6 C 0.103 3.897 7 C -0.162 4.162 8 C 0.558 3.442 9 O -0.562 6.562 10 N -0.687 5.687 11 C 0.137 3.863 12 H 0.088 0.912 13 C 0.184 3.816 14 N -0.616 5.616 15 C -0.239 4.239 16 H 0.081 0.919 17 C -0.063 4.063 18 N -0.947 5.947 19 Si 0.971 3.029 20 H -0.282 1.282 21 H -0.300 1.300 22 H -0.269 1.269 23 C 0.136 3.864 24 C -0.071 4.071 25 C -0.126 4.126 26 C -0.127 4.127 27 C -0.035 4.035 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.069 0.931 31 H 0.123 0.877 32 H 0.198 0.802 33 H 0.178 0.822 34 H 0.407 0.593 35 H 0.001 0.999 36 H 0.019 0.981 37 H 0.244 0.756 38 H 0.039 0.961 39 H 0.024 0.976 40 H 0.067 0.933 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.032 0.968 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.080 0.920 47 H 0.077 0.923 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.202 -0.798 14.264 21.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.021 3.979 4 C -0.111 4.111 5 N -0.175 5.175 6 C -0.056 4.056 7 C -0.167 4.167 8 C 0.345 3.655 9 O -0.442 6.442 10 N -0.337 5.337 11 C 0.031 3.969 12 H 0.106 0.894 13 C 0.057 3.943 14 N -0.342 5.342 15 C -0.368 4.368 16 H 0.099 0.901 17 C -0.256 4.256 18 N -0.596 5.596 19 Si 0.800 3.200 20 H -0.209 1.209 21 H -0.226 1.226 22 H -0.194 1.194 23 C 0.011 3.989 24 C -0.072 4.072 25 C -0.183 4.183 26 C -0.184 4.184 27 C -0.044 4.044 28 C -0.160 4.160 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.214 0.786 33 H 0.195 0.805 34 H 0.245 0.755 35 H 0.019 0.981 36 H 0.038 0.962 37 H 0.054 0.946 38 H 0.057 0.943 39 H 0.042 0.958 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.051 0.949 44 H 0.098 0.902 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.105 -1.015 14.161 21.469 hybrid contribution 0.562 -0.578 -1.649 1.835 sum -15.543 -1.593 12.511 20.016 Atomic orbital electron populations 1.23520 0.75511 1.06358 1.02921 1.86094 1.24044 1.24760 1.88271 1.19728 0.91592 0.87120 0.99471 1.23604 1.02170 0.86178 0.99184 1.67604 1.11532 1.26703 1.11652 1.23035 0.88806 0.98292 0.95467 1.20681 0.93787 0.94746 1.07461 1.18221 0.87459 0.83364 0.76447 1.90717 1.64018 1.38212 1.51249 1.45621 1.07583 1.08392 1.72137 1.22257 0.79667 0.97878 0.97081 0.89423 1.21370 0.95451 0.87584 0.89849 1.44660 1.85337 1.02822 1.01381 1.19356 1.35245 1.00488 0.81739 0.90088 1.25667 1.00403 0.97486 1.02071 1.70163 1.45892 1.10056 1.33457 0.85208 0.78286 0.76273 0.80248 1.20859 1.22643 1.19379 1.21678 0.98453 0.91754 0.86983 1.21812 0.97789 0.92404 0.95242 1.21710 0.97856 1.01703 0.97046 1.21697 0.93249 1.03063 1.00441 1.19994 0.92083 0.95705 0.96598 1.20748 0.98672 0.93169 1.03386 0.90662 0.91199 0.85837 0.78579 0.80550 0.75494 0.98095 0.96245 0.94643 0.94346 0.95841 0.91363 0.90301 0.92134 0.94897 0.90207 0.91060 0.90158 0.90463 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.21 16 2 O -0.32 -6.40 9.57 -92.67 -0.89 -7.28 16 3 C 0.07 1.64 6.68 22.56 0.15 1.79 16 4 C 0.05 0.96 10.21 84.83 0.87 1.82 16 5 N -0.47 -11.49 10.34 -194.40 -2.01 -13.50 16 6 C 0.10 2.68 10.69 85.03 0.91 3.59 16 7 C -0.16 -4.96 5.89 -20.00 -0.12 -5.08 16 8 C 0.56 20.14 7.72 86.79 0.67 20.81 16 9 O -0.56 -23.82 13.22 -3.86 -0.05 -23.87 16 10 N -0.69 -23.06 4.57 -438.82 -2.01 -25.07 16 11 C 0.14 5.15 2.61 46.38 0.12 5.27 16 12 H 0.09 3.37 7.53 -2.39 -0.02 3.35 16 13 C 0.18 9.31 4.77 86.84 0.41 9.72 16 14 N -0.62 -30.98 3.40 -691.72 -2.35 -33.33 16 15 C -0.24 -13.36 10.22 84.03 0.86 -12.50 16 16 H 0.08 4.31 7.84 -2.91 -0.02 4.28 16 17 C -0.06 -3.64 5.41 84.86 0.46 -3.18 16 18 N -0.95 -59.13 10.77 21.65 0.23 -58.90 16 19 Si 0.97 46.78 29.56 68.60 2.03 48.81 16 20 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 21 H -0.30 -14.75 7.11 99.48 0.71 -14.04 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 C 0.14 5.19 6.41 86.73 0.56 5.75 16 24 C -0.07 -2.18 0.80 -50.99 -0.04 -2.22 16 25 C -0.13 -2.70 8.07 71.98 0.58 -2.12 16 26 C -0.13 -3.60 8.41 71.98 0.61 -2.99 16 27 C -0.03 -1.03 5.97 -19.30 -0.12 -1.15 16 28 C -0.10 -3.13 8.67 71.24 0.62 -2.51 16 29 H 0.07 0.48 7.67 -2.39 -0.02 0.46 16 30 H 0.07 0.53 7.68 -2.39 -0.02 0.51 16 31 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.20 2.46 6.30 -2.91 -0.02 2.45 16 33 H 0.18 3.78 6.47 -2.91 -0.02 3.76 16 34 H 0.41 11.67 5.13 -92.71 -0.48 11.19 16 35 H 0.00 0.07 7.66 -2.39 -0.02 0.05 16 36 H 0.02 1.15 7.14 -2.38 -0.02 1.13 16 37 H 0.24 15.02 8.31 -92.71 -0.77 14.24 16 38 H 0.04 1.36 7.76 -2.39 -0.02 1.34 16 39 H 0.02 0.92 7.85 -2.38 -0.02 0.90 16 40 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.20 6.42 -2.39 -0.02 1.19 16 43 H 0.03 1.14 7.57 -2.39 -0.02 1.12 16 44 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 45 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 46 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 47 H 0.08 2.06 7.44 -2.38 -0.02 2.04 16 48 H 0.07 2.56 6.00 -2.39 -0.01 2.55 16 Total: -1.00 -76.29 378.73 3.11 -73.18 By element: Atomic # 1 Polarization: 21.24 SS G_CDS: 0.50 Total: 21.75 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.65 Total: 18.21 kcal Atomic # 7 Polarization: -124.66 SS G_CDS: -6.13 Total: -130.79 kcal Atomic # 8 Polarization: -30.22 SS G_CDS: -0.94 Total: -31.15 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.29 3.11 -73.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974727447.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.050 kcal (2) G-P(sol) polarization free energy of solvation -76.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds