Wall clock time and date at job start Tue Mar 31 2020 17:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35920 * 117.00218 * 2 1 4 4 C 1.38851 * 120.40533 * 359.97438 * 3 2 1 5 5 N 1.31884 * 121.00368 * 179.97438 * 4 3 2 6 6 C 1.31680 * 121.93786 * 0.02562 * 5 4 3 7 7 C 1.39528 * 120.69296 * 0.02562 * 6 5 4 8 8 C 1.47856 * 120.53089 * 179.97438 * 7 6 5 9 9 O 1.21552 * 119.99773 * 173.92913 * 8 7 6 10 10 N 1.34777 * 119.99586 * 353.92071 * 8 7 6 11 11 C 1.46509 * 119.99393 * 180.02562 * 10 8 7 12 12 H 1.08993 * 110.88865 * 31.11839 * 11 10 8 13 13 C 1.54907 * 111.00086 * 267.19806 * 11 10 8 14 14 N 1.47430 * 104.83393 * 278.93536 * 13 11 10 15 15 C 1.36929 * 125.64792 * 156.13889 * 14 13 11 16 16 H 1.07999 * 120.00059 * 179.68938 * 15 14 13 17 17 C 1.38817 * 120.00159 * 359.69437 * 15 14 13 18 18 N 1.31614 * 119.99757 * 359.97438 * 17 15 14 19 19 Si 1.86809 * 119.99916 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47151 * 89.99878 * 19 17 15 21 21 H 1.48501 * 109.46767 * 209.99685 * 19 17 15 22 22 H 1.48499 * 109.46752 * 329.99640 * 19 17 15 23 23 C 1.47022 * 108.70161 * 335.87647 * 14 13 11 24 24 C 1.54327 * 107.27126 * 1.05716 * 23 14 13 25 25 C 1.52991 * 110.71882 * 140.55965 * 24 23 14 26 26 C 1.53007 * 110.71925 * 263.83044 * 24 23 14 27 27 C 1.38842 * 120.40723 * 180.25979 * 3 2 1 28 28 C 1.50695 * 120.88140 * 0.02562 * 27 3 2 29 29 H 1.09003 * 109.47228 * 60.00002 * 1 2 3 30 30 H 1.08993 * 109.46960 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46910 * 300.00004 * 1 2 3 32 32 H 1.08004 * 119.49933 * 359.97438 * 4 3 2 33 33 H 1.08007 * 119.65321 * 179.97438 * 6 5 4 34 34 H 0.96994 * 120.00481 * 0.02562 * 10 8 7 35 35 H 1.09004 * 110.36865 * 160.09964 * 13 11 10 36 36 H 1.08999 * 110.37258 * 37.77550 * 13 11 10 37 37 H 0.97001 * 119.99990 * 180.02562 * 18 17 15 38 38 H 1.08995 * 109.88175 * 120.47473 * 23 14 13 39 39 H 1.08999 * 109.88173 * 241.63964 * 23 14 13 40 40 H 1.09004 * 109.47741 * 61.45173 * 25 24 23 41 41 H 1.09000 * 109.47386 * 181.45670 * 25 24 23 42 42 H 1.09007 * 109.47043 * 301.45174 * 25 24 23 43 43 H 1.08998 * 109.46672 * 58.54493 * 26 24 23 44 44 H 1.08993 * 109.46698 * 178.54759 * 26 24 23 45 45 H 1.08998 * 109.47048 * 298.54548 * 26 24 23 46 46 H 1.09005 * 109.47514 * 263.88308 * 28 27 3 47 47 H 1.09007 * 109.47112 * 23.88515 * 28 27 3 48 48 H 1.09006 * 109.47113 * 143.88536 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3809 -0.0005 5 7 1.8847 3.5621 0.0000 6 6 3.1953 3.6891 0.0005 7 6 4.0199 2.5636 0.0000 8 6 5.4912 2.7103 0.0000 9 8 6.1998 1.7290 0.1109 10 7 6.0464 3.9322 -0.1231 11 6 7.5043 4.0775 -0.1237 12 1 7.9823 3.1983 -0.5554 13 6 8.0352 4.3539 1.3051 14 7 7.8197 5.7971 1.5153 15 6 7.6946 6.4168 2.7299 16 1 7.5433 7.4851 2.7781 17 6 7.7624 5.6720 3.8993 18 7 7.9463 4.3701 3.8406 19 14 7.5910 6.5174 5.5564 20 1 6.1600 6.5465 5.9516 21 1 8.3710 5.7707 6.5759 22 1 8.1061 7.9068 5.4587 23 6 7.7676 6.4617 0.2048 24 6 7.9342 5.3676 -0.8707 25 6 7.0131 5.6355 -2.0625 26 6 9.3927 5.2707 -1.3229 27 6 3.4321 1.2935 -0.0054 28 6 4.2810 0.0484 -0.0120 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 0.2197 2.3226 -0.0014 33 1 3.6367 4.6749 0.0005 34 1 5.4810 4.7153 -0.2114 35 1 9.0971 4.1159 1.3679 36 1 7.4720 3.7757 2.0376 37 1 7.9933 3.8495 4.6578 38 1 6.8067 6.9608 0.0802 39 1 8.5774 7.1869 0.1245 40 1 7.2766 6.5901 -2.5182 41 1 7.1280 4.8383 -2.7970 42 1 5.9783 5.6690 -1.7216 43 1 10.0255 5.0485 -0.4637 44 1 9.4917 4.4760 -2.0623 45 1 9.6998 6.2185 -1.7649 46 1 4.5803 -0.1927 1.0080 47 1 3.7076 -0.7801 -0.4279 48 1 5.1692 0.2174 -0.6209 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974727450.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:58 Heat of formation + Delta-G solvation = -26.948839 kcal Electronic energy + Delta-G solvation = -29912.083065 eV Core-core repulsion = 25967.605314 eV Total energy + Delta-G solvation = -3944.477750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.13996 -41.00290 -39.59565 -38.80545 -35.73037 -34.88838 -34.54152 -32.58714 -31.88996 -29.79964 -28.87066 -28.47445 -27.93959 -27.37622 -25.54035 -24.56251 -23.40165 -22.31023 -21.51347 -20.22893 -19.21570 -18.71845 -18.47612 -17.64776 -17.37969 -17.08715 -16.95885 -16.58637 -15.97228 -15.65780 -15.42885 -15.21934 -15.09661 -14.70268 -14.59440 -14.10911 -13.96966 -13.85883 -13.75917 -13.68987 -13.65269 -13.17279 -12.99686 -12.97895 -12.85432 -12.71599 -12.59522 -12.53865 -12.35860 -12.10767 -11.76487 -11.73402 -11.42832 -11.34360 -11.15702 -10.76459 -10.65092 -10.42885 -9.91740 -9.52764 -8.82660 -7.74329 -5.18810 -0.49554 0.08118 1.45101 1.46324 1.55070 1.78360 1.92850 2.36659 2.49670 2.68850 3.26175 3.35660 3.42329 3.58722 3.62966 3.66013 3.72291 3.99168 4.02448 4.09703 4.11507 4.36741 4.41574 4.43526 4.52702 4.54528 4.64048 4.72207 4.76472 4.77782 4.85150 4.90349 4.95202 5.02919 5.05458 5.12543 5.15680 5.22840 5.29586 5.35217 5.42736 5.50535 5.55239 5.69702 5.84787 6.14296 6.32974 6.53181 6.70921 7.11184 7.19842 7.81196 8.44527 9.26014 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.003870 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.298133 B = 7233.141453 C = 8452.241439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.318 6.318 3 C 0.070 3.930 4 C 0.045 3.955 5 N -0.467 5.467 6 C 0.101 3.899 7 C -0.160 4.160 8 C 0.559 3.441 9 O -0.562 6.562 10 N -0.685 5.685 11 C 0.137 3.863 12 H 0.087 0.913 13 C 0.154 3.846 14 N -0.617 5.617 15 C -0.231 4.231 16 H 0.084 0.916 17 C -0.067 4.067 18 N -0.948 5.948 19 Si 0.974 3.026 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.267 1.267 23 C 0.136 3.864 24 C -0.073 4.073 25 C -0.125 4.125 26 C -0.126 4.126 27 C -0.033 4.033 28 C -0.104 4.104 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.069 0.931 32 H 0.198 0.802 33 H 0.171 0.829 34 H 0.406 0.594 35 H -0.012 1.012 36 H 0.069 0.931 37 H 0.242 0.758 38 H 0.036 0.964 39 H 0.026 0.974 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.077 0.923 46 H 0.066 0.934 47 H 0.082 0.918 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.070 -4.447 -14.591 20.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.230 6.230 3 C 0.022 3.978 4 C -0.112 4.112 5 N -0.176 5.176 6 C -0.058 4.058 7 C -0.166 4.166 8 C 0.346 3.654 9 O -0.442 6.442 10 N -0.336 5.336 11 C 0.031 3.969 12 H 0.105 0.895 13 C 0.027 3.973 14 N -0.343 5.343 15 C -0.360 4.360 16 H 0.102 0.898 17 C -0.259 4.259 18 N -0.598 5.598 19 Si 0.803 3.197 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.192 1.192 23 C 0.012 3.988 24 C -0.074 4.074 25 C -0.183 4.183 26 C -0.184 4.184 27 C -0.042 4.042 28 C -0.160 4.160 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.087 0.913 32 H 0.214 0.786 33 H 0.188 0.812 34 H 0.243 0.757 35 H 0.006 0.994 36 H 0.087 0.913 37 H 0.052 0.948 38 H 0.054 0.946 39 H 0.044 0.956 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.053 0.947 44 H 0.090 0.910 45 H 0.096 0.904 46 H 0.084 0.916 47 H 0.101 0.899 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.995 -4.603 -14.314 20.541 hybrid contribution 0.492 -0.015 1.585 1.660 sum -13.502 -4.618 -12.729 19.122 Atomic orbital electron populations 1.23524 0.75527 1.06381 1.02888 1.86092 1.24017 1.24654 1.88261 1.19720 0.91639 0.87074 0.99404 1.23610 1.02177 0.86202 0.99261 1.67601 1.11497 1.26847 1.11676 1.22979 0.88903 0.98262 0.95659 1.20677 0.93859 0.94703 1.07316 1.18185 0.87394 0.83459 0.76318 1.90703 1.63948 1.38520 1.51038 1.45602 1.07692 1.08029 1.72235 1.22233 0.79686 0.98175 0.96821 0.89511 1.21967 0.95642 0.85866 0.93778 1.44679 1.84814 1.03723 1.01095 1.19427 1.40842 0.92370 0.83325 0.89818 1.25572 1.02963 0.96299 1.01083 1.70099 1.57930 1.05756 1.25997 0.85136 0.77158 0.77759 0.79654 1.21526 1.22622 1.19222 1.21667 0.98418 0.94277 0.84472 1.21830 0.97699 0.92827 0.95088 1.21697 0.98053 1.02843 0.95676 1.21689 0.93109 1.03037 1.00539 1.19996 0.92048 0.95663 0.96535 1.20770 0.99085 0.93090 1.03025 0.90682 0.85737 0.91287 0.78587 0.81184 0.75675 0.99423 0.91287 0.94848 0.94590 0.95572 0.90424 0.91472 0.92456 0.94681 0.91027 0.90396 0.91589 0.89922 0.89947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.82 113.37 1.11 1.22 16 2 O -0.32 -6.37 9.57 -92.65 -0.89 -7.25 16 3 C 0.07 1.69 6.68 22.56 0.15 1.84 16 4 C 0.04 0.98 10.21 84.83 0.87 1.84 16 5 N -0.47 -12.31 10.34 -194.38 -2.01 -14.32 16 6 C 0.10 2.84 10.69 85.03 0.91 3.75 16 7 C -0.16 -5.11 5.89 -20.00 -0.12 -5.22 16 8 C 0.56 20.72 7.72 86.79 0.67 21.39 16 9 O -0.56 -24.07 13.15 -3.88 -0.05 -24.12 16 10 N -0.69 -23.84 4.47 -438.81 -1.96 -25.80 16 11 C 0.14 5.21 2.67 46.38 0.12 5.34 16 12 H 0.09 3.39 7.44 -2.39 -0.02 3.37 16 13 C 0.15 7.76 5.26 86.85 0.46 8.22 16 14 N -0.62 -30.81 3.39 -691.98 -2.35 -33.16 16 15 C -0.23 -12.75 10.27 84.04 0.86 -11.88 16 16 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 17 C -0.07 -3.83 5.49 84.86 0.47 -3.36 16 18 N -0.95 -58.45 10.09 21.65 0.22 -58.23 16 19 Si 0.97 46.54 29.55 68.60 2.03 48.57 16 20 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 23 C 0.14 5.19 6.41 86.73 0.56 5.75 16 24 C -0.07 -2.26 0.80 -50.99 -0.04 -2.30 16 25 C -0.13 -2.82 8.16 71.98 0.59 -2.23 16 26 C -0.13 -3.54 8.44 71.98 0.61 -2.93 16 27 C -0.03 -1.00 5.97 -19.31 -0.12 -1.11 16 28 C -0.10 -3.06 8.69 71.23 0.62 -2.44 16 29 H 0.07 0.49 7.67 -2.39 -0.02 0.47 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.07 0.54 7.68 -2.39 -0.02 0.53 16 32 H 0.20 2.63 6.30 -2.91 -0.02 2.61 16 33 H 0.17 4.27 6.46 -2.91 -0.02 4.25 16 34 H 0.41 12.38 5.23 -92.71 -0.48 11.90 16 35 H -0.01 -0.67 7.71 -2.39 -0.02 -0.69 16 36 H 0.07 4.14 5.87 -2.39 -0.01 4.12 16 37 H 0.24 14.74 8.31 -92.71 -0.77 13.97 16 38 H 0.04 1.29 7.82 -2.39 -0.02 1.27 16 39 H 0.03 1.00 7.84 -2.39 -0.02 0.98 16 40 H 0.08 1.46 8.14 -2.38 -0.02 1.44 16 41 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.24 6.34 -2.38 -0.02 1.23 16 43 H 0.03 1.18 7.44 -2.39 -0.02 1.16 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 46 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 47 H 0.08 2.05 7.45 -2.38 -0.02 2.03 16 48 H 0.08 2.70 5.97 -2.38 -0.01 2.69 16 Total: -1.00 -74.39 377.27 3.20 -71.18 By element: Atomic # 1 Polarization: 24.78 SS G_CDS: 0.50 Total: 25.28 kcal Atomic # 6 Polarization: 10.13 SS G_CDS: 7.72 Total: 17.85 kcal Atomic # 7 Polarization: -125.41 SS G_CDS: -6.10 Total: -131.51 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -0.94 Total: -31.37 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -74.39 3.20 -71.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974727450.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.232 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.154 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds