Wall clock time and date at job start Tue Mar 31 2020 17:49:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38354 * 119.40726 * 2 1 4 4 C 1.38346 * 119.45556 * 179.74338 * 3 2 1 5 5 C 1.50693 * 120.82406 * 180.25157 * 4 3 2 6 6 C 1.39989 * 118.34717 * 0.47562 * 4 3 2 7 7 C 1.47521 * 120.59756 * 179.79980 * 6 4 3 8 8 O 1.21592 * 120.00058 * 269.72676 * 7 6 4 9 9 N 1.34776 * 119.99636 * 89.71726 * 7 6 4 10 10 C 1.46500 * 119.99850 * 180.02562 * 9 7 6 11 11 H 1.09004 * 110.88834 * 31.12650 * 10 9 7 12 12 C 1.54910 * 111.00688 * 267.20143 * 10 9 7 13 13 N 1.47425 * 104.83231 * 278.93409 * 12 10 9 14 14 C 1.36933 * 125.64542 * 156.13438 * 13 12 10 15 15 H 1.08005 * 119.99541 * 179.69129 * 14 13 12 16 16 C 1.38813 * 120.00564 * 359.69503 * 14 13 12 17 17 N 1.31616 * 119.99514 * 359.97438 * 16 14 13 18 18 Si 1.86793 * 120.00305 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47103 * 60.00082 * 18 16 14 20 20 H 1.48502 * 109.47327 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.47083 * 299.99999 * 18 16 14 22 22 C 1.47026 * 108.70074 * 335.87083 * 13 12 10 23 23 C 1.54316 * 107.27365 * 1.05989 * 22 13 12 24 24 C 1.52996 * 110.72327 * 140.55544 * 23 22 13 25 25 C 1.53000 * 110.71996 * 263.82886 * 23 22 13 26 26 C 1.40278 * 118.80601 * 359.53007 * 6 4 3 27 27 O 1.35424 * 119.80059 * 180.25201 * 26 6 4 28 28 N 1.31877 * 119.40570 * 179.97438 * 2 1 3 29 29 H 1.08998 * 109.47173 * 270.02646 * 1 2 3 30 30 H 1.09001 * 109.46998 * 30.01827 * 1 2 3 31 31 H 1.08998 * 109.47325 * 150.01892 * 1 2 3 32 32 H 1.07993 * 120.26906 * 359.97438 * 3 2 1 33 33 H 1.08992 * 109.47793 * 270.22651 * 5 4 3 34 34 H 1.09003 * 109.47099 * 30.23544 * 5 4 3 35 35 H 1.09005 * 109.46761 * 150.22707 * 5 4 3 36 36 H 0.96995 * 120.00132 * 0.02562 * 9 7 6 37 37 H 1.09001 * 110.36852 * 160.09708 * 12 10 9 38 38 H 1.08998 * 110.36449 * 37.77356 * 12 10 9 39 39 H 0.97002 * 119.99999 * 179.97438 * 17 16 14 40 40 H 1.09004 * 109.87531 * 120.47707 * 22 13 12 41 41 H 1.09000 * 109.87938 * 241.63960 * 22 13 12 42 42 H 1.09003 * 109.47103 * 61.45020 * 24 23 22 43 43 H 1.09000 * 109.47385 * 181.45314 * 24 23 22 44 44 H 1.09004 * 109.47258 * 301.45425 * 24 23 22 45 45 H 1.09002 * 109.47458 * 58.54477 * 25 23 22 46 46 H 1.09005 * 109.47376 * 178.54611 * 25 23 22 47 47 H 1.08996 * 109.47089 * 298.54558 * 25 23 22 48 48 H 0.96701 * 114.00374 * 89.99659 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5698 1.2064 0.0054 5 6 4.3408 2.5012 0.0112 6 6 4.2356 -0.0250 0.0005 7 6 5.7097 -0.0816 0.0014 8 8 6.3179 -0.1053 -1.0512 9 7 6.3823 -0.1070 1.1691 10 6 7.8462 -0.1626 1.1701 11 1 8.2552 0.3484 0.2985 12 6 8.3462 -1.6271 1.2415 13 7 8.2601 -1.9862 2.6687 14 6 8.1480 -3.2568 3.1666 15 1 8.0966 -3.4161 4.2336 16 6 8.1005 -4.3402 2.3001 17 7 8.1628 -4.1460 0.9998 18 14 7.9483 -6.0736 2.9793 19 1 6.6942 -6.1885 3.7663 20 1 7.9179 -7.0446 1.8561 21 1 9.1111 -6.3658 3.8555 22 6 8.3211 -0.7544 3.4692 23 6 8.4243 0.4282 2.4832 24 6 7.5786 1.6092 2.9637 25 6 9.8832 0.8476 2.2918 26 6 3.4757 -1.2042 0.0004 27 8 4.0990 -2.4065 0.0009 28 7 2.1545 -1.1489 0.0005 29 1 -0.3633 0.0005 1.0276 30 1 -0.3633 0.8898 -0.5141 31 1 -0.3634 -0.8901 -0.5135 32 1 1.6411 2.1375 -0.0004 33 1 4.5273 2.8177 -1.0149 34 1 3.7619 3.2665 0.5282 35 1 5.2912 2.3557 0.5250 36 1 5.8971 -0.0883 2.0088 37 1 9.3776 -1.6932 0.8952 38 1 7.7033 -2.2767 0.6474 39 1 8.1299 -4.9031 0.3942 40 1 7.4169 -0.6580 4.0704 41 1 9.1983 -0.7756 4.1158 42 1 7.9483 1.9512 3.9304 43 1 7.6457 2.4221 2.2407 44 1 6.5394 1.2955 3.0625 45 1 10.4591 0.0003 1.9196 46 1 9.9349 1.6657 1.5733 47 1 10.2951 1.1757 3.2461 48 1 4.2798 -2.7555 0.8844 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974896023.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:53 Heat of formation + Delta-G solvation = -45.031200 kcal Electronic energy + Delta-G solvation = -30435.269911 eV Core-core repulsion = 26490.008051 eV Total energy + Delta-G solvation = -3945.261860 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.06533 -40.85806 -39.28940 -38.43308 -35.68009 -35.27209 -34.43534 -32.77286 -32.59496 -30.20880 -29.21287 -28.42495 -27.90048 -27.36370 -25.28729 -24.32288 -22.96634 -22.09529 -21.40435 -20.23940 -19.51601 -18.72776 -18.68229 -18.20471 -17.54914 -16.79190 -16.54820 -15.97325 -15.68308 -15.38160 -15.33762 -15.14968 -14.84045 -14.65855 -14.19206 -14.11907 -14.04246 -13.90943 -13.68721 -13.65761 -13.22195 -13.08254 -13.00952 -12.96739 -12.84328 -12.77677 -12.61680 -12.59642 -12.55243 -12.16633 -11.80543 -11.76113 -11.48355 -11.37215 -11.29609 -10.76090 -10.59754 -10.47803 -10.01796 -9.83831 -8.83860 -7.73627 -5.19166 -0.27728 0.05017 1.44828 1.46332 1.46789 1.54174 2.12690 2.36823 2.49201 2.57721 3.35460 3.45364 3.56334 3.57842 3.67224 3.73674 3.95831 4.01493 4.07613 4.21447 4.32523 4.41443 4.50673 4.53204 4.60528 4.69018 4.72956 4.82666 4.83413 4.88694 4.92923 4.97518 5.02513 5.03381 5.10539 5.15822 5.20089 5.21330 5.28170 5.33858 5.49228 5.53660 5.54832 5.65853 5.83919 6.32070 6.37306 6.50140 6.82787 7.10196 7.17095 7.80591 8.44233 9.25681 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.004763 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.096455 B = 5877.740127 C = 7659.018660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.156 3.844 3 C -0.173 4.173 4 C 0.009 3.991 5 C -0.120 4.120 6 C -0.220 4.220 7 C 0.580 3.420 8 O -0.579 6.579 9 N -0.679 5.679 10 C 0.135 3.865 11 H 0.082 0.918 12 C 0.154 3.846 13 N -0.615 5.615 14 C -0.234 4.234 15 H 0.083 0.917 16 C -0.061 4.061 17 N -0.944 5.944 18 Si 0.973 3.027 19 H -0.274 1.274 20 H -0.302 1.302 21 H -0.280 1.280 22 C 0.138 3.862 23 C -0.073 4.073 24 C -0.124 4.124 25 C -0.127 4.127 26 C 0.333 3.667 27 O -0.496 6.496 28 N -0.534 5.534 29 H 0.099 0.901 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.192 0.808 33 H 0.085 0.915 34 H 0.118 0.882 35 H 0.064 0.936 36 H 0.406 0.594 37 H -0.016 1.016 38 H 0.070 0.930 39 H 0.242 0.758 40 H 0.035 0.965 41 H 0.025 0.975 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.056 0.944 45 H 0.032 0.968 46 H 0.071 0.929 47 H 0.078 0.922 48 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.149 19.524 3.764 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.019 3.981 3 C -0.192 4.192 4 C 0.002 3.998 5 C -0.176 4.176 6 C -0.227 4.227 7 C 0.365 3.635 8 O -0.458 6.458 9 N -0.328 5.328 10 C 0.029 3.971 11 H 0.100 0.900 12 C 0.028 3.972 13 N -0.341 5.341 14 C -0.363 4.363 15 H 0.101 0.899 16 C -0.254 4.254 17 N -0.593 5.593 18 Si 0.802 3.198 19 H -0.200 1.200 20 H -0.229 1.229 21 H -0.206 1.206 22 C 0.013 3.987 23 C -0.074 4.074 24 C -0.181 4.181 25 C -0.184 4.184 26 C 0.154 3.846 27 O -0.305 6.305 28 N -0.255 5.255 29 H 0.117 0.883 30 H 0.130 0.870 31 H 0.088 0.912 32 H 0.209 0.791 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.083 0.917 36 H 0.242 0.758 37 H 0.002 0.998 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.043 0.957 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.090 0.910 47 H 0.097 0.903 48 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges -13.134 18.534 2.400 22.842 hybrid contribution 0.998 -1.595 0.656 1.993 sum -12.136 16.939 3.056 21.061 Atomic orbital electron populations 1.20932 0.85301 1.04937 1.04794 1.22001 0.98831 0.86802 0.90487 1.22208 0.92721 1.00773 1.03520 1.20644 0.94768 0.93666 0.90770 1.21016 0.99970 0.92503 1.04160 1.20855 0.93670 0.95432 1.12768 1.18025 0.86759 0.74930 0.83746 1.90762 1.70342 1.51716 1.33029 1.45660 1.06931 1.72482 1.07759 1.22236 0.79424 0.97051 0.98422 0.90038 1.21949 0.96295 0.92427 0.86562 1.44649 1.86041 1.01544 1.01897 1.19359 1.42063 0.82821 0.92100 0.89884 1.25534 1.02959 1.01359 0.95587 1.70098 1.58231 1.29126 1.01874 0.85240 0.78252 0.79880 0.76464 1.20024 1.22887 1.20584 1.21646 0.98255 0.85403 0.93381 1.21833 0.97273 0.95375 0.92890 1.21691 0.98589 0.95680 1.02147 1.21695 0.93215 1.00634 1.02875 1.19283 0.87056 0.84527 0.93709 1.84730 1.77000 1.33592 1.35184 1.67101 1.08574 1.32538 1.17320 0.88262 0.87000 0.91199 0.79124 0.89603 0.86343 0.91745 0.75788 0.99805 0.91199 0.94865 0.94745 0.95692 0.90419 0.91118 0.92517 0.94911 0.90961 0.90287 0.72691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.29 10.16 71.24 0.72 -0.57 16 2 C 0.16 3.40 6.78 42.58 0.29 3.69 16 3 C -0.17 -2.99 9.41 22.32 0.21 -2.78 16 4 C 0.01 0.22 5.95 -19.42 -0.12 0.10 16 5 C -0.12 -1.98 9.69 71.23 0.69 -1.29 16 6 C -0.22 -7.22 5.66 -19.91 -0.11 -7.34 16 7 C 0.58 22.34 5.42 86.69 0.47 22.81 16 8 O -0.58 -27.70 16.75 -4.00 -0.07 -27.77 16 9 N -0.68 -23.71 4.51 -439.12 -1.98 -25.69 16 10 C 0.13 5.18 2.67 46.38 0.12 5.30 16 11 H 0.08 3.28 7.44 -2.39 -0.02 3.26 16 12 C 0.15 7.85 5.26 86.86 0.46 8.31 16 13 N -0.62 -30.52 3.39 -691.99 -2.35 -32.87 16 14 C -0.23 -12.84 10.27 84.03 0.86 -11.98 16 15 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 16 C -0.06 -3.50 5.49 84.86 0.47 -3.03 16 17 N -0.94 -58.24 10.09 21.65 0.22 -58.02 16 18 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 19 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 20 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 21 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 22 C 0.14 5.20 6.41 86.73 0.56 5.76 16 23 C -0.07 -2.21 0.80 -51.00 -0.04 -2.25 16 24 C -0.12 -2.61 8.16 71.98 0.59 -2.02 16 25 C -0.13 -3.52 8.44 71.98 0.61 -2.91 16 26 C 0.33 11.95 7.77 85.13 0.66 12.61 16 27 O -0.50 -20.41 13.01 -87.20 -1.13 -21.54 16 28 N -0.53 -16.79 10.28 -296.06 -3.04 -19.83 16 29 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.11 0.67 8.07 -2.39 -0.02 0.65 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.19 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 34 H 0.12 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.06 1.23 7.19 -2.38 -0.02 1.21 16 36 H 0.41 12.53 7.11 -92.71 -0.66 11.87 16 37 H -0.02 -0.90 7.71 -2.39 -0.02 -0.92 16 38 H 0.07 4.24 5.87 -2.39 -0.01 4.23 16 39 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 40 H 0.03 1.22 7.82 -2.38 -0.02 1.20 16 41 H 0.03 0.95 7.84 -2.39 -0.02 0.93 16 42 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.06 1.16 6.34 -2.38 -0.02 1.14 16 45 H 0.03 1.11 7.44 -2.39 -0.02 1.09 16 46 H 0.07 1.71 8.14 -2.38 -0.02 1.69 16 47 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.41 14.92 9.06 -74.06 -0.67 14.25 16 Total: -1.00 -81.60 388.44 -0.23 -81.83 By element: Atomic # 1 Polarization: 31.40 SS G_CDS: -0.34 Total: 31.06 kcal Atomic # 6 Polarization: 17.97 SS G_CDS: 6.44 Total: 24.41 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -7.15 Total: -136.41 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -1.20 Total: -49.31 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -81.60 -0.23 -81.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974896023.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.799 kcal (2) G-P(sol) polarization free energy of solvation -81.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds