Wall clock time and date at job start Tue Mar 31 2020 18:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40197 * 120.36625 * 2 1 4 4 C 1.35355 * 119.94699 * 179.97438 * 3 2 1 5 5 N 1.35766 * 120.70307 * 0.25948 * 4 3 2 6 6 C 1.46492 * 119.62590 * 179.72151 * 5 4 3 7 7 C 1.50692 * 109.47356 * 89.99514 * 6 5 4 8 8 O 1.21285 * 119.99976 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00258 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00134 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.63906 * 31.86119 * 10 9 7 12 12 C 1.54322 * 110.71842 * 268.52548 * 10 9 7 13 13 N 1.47022 * 107.27233 * 263.82826 * 12 10 9 14 14 C 1.36940 * 125.64990 * 181.10816 * 13 12 10 15 15 H 1.07998 * 120.00157 * 179.97438 * 14 13 12 16 16 C 1.38808 * 119.99860 * 359.94685 * 14 13 12 17 17 N 1.31622 * 120.00306 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00023 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47115 * 59.99760 * 18 16 14 20 20 H 1.48504 * 109.47457 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47003 * 300.00083 * 18 16 14 22 22 C 1.47428 * 108.70359 * 1.05791 * 13 12 10 23 23 C 1.54903 * 104.83298 * 335.87545 * 22 13 12 24 24 C 1.53009 * 111.00347 * 278.93199 * 23 22 13 25 25 C 1.52993 * 111.00793 * 155.08063 * 23 22 13 26 26 C 1.34658 * 120.74891 * 359.47837 * 5 4 3 27 27 O 1.22059 * 119.98611 * 180.23512 * 26 5 4 28 28 C 1.36403 * 120.36810 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47025 * 90.00043 * 1 2 3 30 30 H 1.08998 * 109.46958 * 209.99316 * 1 2 3 31 31 H 1.09000 * 109.46938 * 329.99945 * 1 2 3 32 32 H 1.08002 * 120.02826 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.64507 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47215 * 210.00187 * 6 5 4 35 35 H 1.09008 * 109.47166 * 329.99496 * 6 5 4 36 36 H 0.97005 * 120.00175 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.88718 * 23.24814 * 12 10 9 38 38 H 1.09005 * 109.88381 * 144.41632 * 12 10 9 39 39 H 0.96994 * 120.00065 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.36824 * 217.02876 * 22 13 12 41 41 H 1.09005 * 110.45506 * 94.75423 * 22 13 12 42 42 H 1.09000 * 109.47222 * 172.19609 * 24 23 22 43 43 H 1.08993 * 109.46785 * 292.19812 * 24 23 22 44 44 H 1.08997 * 109.46869 * 52.19468 * 24 23 22 45 45 H 1.09000 * 109.47063 * 307.79849 * 25 23 22 46 46 H 1.09000 * 109.47050 * 67.79885 * 25 23 22 47 47 H 1.08999 * 109.47350 * 187.80191 * 25 23 22 48 48 H 1.08001 * 120.34721 * 0.04835 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2539 0.0273 -0.0042 6 6 5.7187 0.0442 -0.0097 7 6 6.2264 0.0475 1.4091 8 8 5.4418 0.0363 2.3339 9 7 7.5523 0.0617 1.6504 10 6 8.0458 0.0643 3.0298 11 1 7.3656 -0.4831 3.6822 12 6 8.2487 1.5086 3.5343 13 7 9.6669 1.8437 3.3402 14 6 10.2608 3.0296 3.6811 15 1 11.3144 3.1785 3.4969 16 6 9.5082 4.0406 4.2628 17 7 8.2238 3.8596 4.4863 18 14 10.3180 5.6586 4.7272 19 1 10.8914 6.2918 3.5124 20 1 9.3056 6.5649 5.3263 21 1 11.4008 5.4056 5.7114 22 6 10.3443 0.6910 2.7188 23 6 9.4760 -0.5331 3.1022 24 6 9.7989 -1.0124 4.5189 25 6 9.6486 -1.6668 2.0895 26 6 3.6018 -1.1508 0.0010 27 8 4.2313 -2.1965 0.0009 28 6 2.1966 -1.1769 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6822 2.1487 0.0004 33 1 4.1103 2.1344 0.0001 34 1 6.0903 -0.8406 -0.5267 35 1 6.0699 0.9393 -0.5234 36 1 8.1798 0.0703 0.9107 37 1 7.6241 2.1930 2.9603 38 1 7.9947 1.5707 4.5925 39 1 7.6979 4.5661 4.8925 40 1 11.3520 0.5819 3.1196 41 1 10.3782 0.8077 1.6355 42 1 9.0840 -1.7803 4.8146 43 1 10.8069 -1.4265 4.5414 44 1 9.7359 -0.1719 5.2100 45 1 9.4805 -1.2836 1.0830 46 1 10.6597 -2.0675 2.1615 47 1 8.9286 -2.4570 2.3023 48 1 1.6683 -2.1189 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975099546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:23 Heat of formation + Delta-G solvation = -9.411322 kcal Electronic energy + Delta-G solvation = -29546.459867 eV Core-core repulsion = 25602.742600 eV Total energy + Delta-G solvation = -3943.717267 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.48990 -39.67474 -37.93865 -37.02118 -35.26427 -33.92335 -33.07841 -30.76339 -30.60590 -29.55704 -28.28822 -27.16335 -26.31385 -25.64116 -23.75279 -23.42096 -21.78550 -20.68228 -19.98749 -18.85982 -17.58266 -17.46098 -17.30078 -16.70698 -16.06846 -15.65976 -15.23563 -14.98746 -14.50921 -14.27119 -14.19384 -13.98025 -13.88321 -13.68067 -13.42843 -13.27317 -12.87873 -12.57301 -12.47889 -12.27389 -11.98616 -11.96475 -11.81071 -11.71333 -11.67792 -11.38788 -11.08851 -11.01639 -10.79219 -10.43592 -10.31264 -10.16240 -10.04048 -9.94732 -9.91083 -9.66670 -9.44890 -8.67143 -8.51117 -7.99542 -6.86423 -5.72507 -3.07390 0.77822 1.86064 2.46296 2.82698 3.37159 3.38354 3.42605 3.44041 3.73856 4.45575 4.47091 4.52330 4.65667 4.82008 4.90416 4.97164 5.02131 5.13654 5.24942 5.27779 5.29900 5.32420 5.44728 5.50741 5.61402 5.62871 5.79824 5.88104 5.93095 5.99791 6.01985 6.15720 6.19625 6.24093 6.29220 6.36632 6.46170 6.56080 6.59306 6.65510 6.68686 6.92720 7.04227 7.51114 7.58145 7.74683 7.84102 8.04680 8.21984 8.47213 9.18742 9.79453 10.44895 11.38040 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003311 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.647778 B = 8455.419472 C =10026.730031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.016 3.984 3 C -0.234 4.234 4 C 0.151 3.849 5 N -0.478 5.478 6 C 0.069 3.931 7 C 0.500 3.500 8 O -0.528 6.528 9 N -0.704 5.704 10 C 0.124 3.876 11 H 0.089 0.911 12 C 0.177 3.823 13 N -0.602 5.602 14 C -0.230 4.230 15 H 0.077 0.923 16 C -0.007 4.007 17 N -0.919 5.919 18 Si 0.911 3.089 19 H -0.286 1.286 20 H -0.291 1.291 21 H -0.285 1.285 22 C 0.143 3.857 23 C -0.089 4.089 24 C -0.126 4.126 25 C -0.131 4.131 26 C 0.523 3.477 27 O -0.555 6.555 28 C -0.252 4.252 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.145 0.855 33 H 0.163 0.837 34 H 0.127 0.873 35 H 0.121 0.879 36 H 0.397 0.603 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.253 0.747 40 H 0.041 0.959 41 H 0.016 0.984 42 H 0.048 0.952 43 H 0.053 0.947 44 H 0.069 0.931 45 H 0.050 0.950 46 H 0.055 0.945 47 H 0.053 0.947 48 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.172 -7.408 -11.902 16.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.013 3.987 3 C -0.257 4.257 4 C 0.024 3.976 5 N -0.189 5.189 6 C -0.056 4.056 7 C 0.284 3.716 8 O -0.404 6.404 9 N -0.355 5.355 10 C 0.020 3.980 11 H 0.107 0.893 12 C 0.051 3.949 13 N -0.329 5.329 14 C -0.358 4.358 15 H 0.095 0.905 16 C -0.203 4.203 17 N -0.567 5.567 18 Si 0.742 3.258 19 H -0.213 1.213 20 H -0.216 1.216 21 H -0.212 1.212 22 C 0.017 3.983 23 C -0.091 4.091 24 C -0.184 4.184 25 C -0.189 4.189 26 C 0.325 3.675 27 O -0.438 6.438 28 C -0.274 4.274 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.163 0.837 33 H 0.180 0.820 34 H 0.145 0.855 35 H 0.139 0.861 36 H 0.232 0.768 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.033 0.967 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.088 0.912 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.072 0.928 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -9.372 -7.880 -11.116 16.538 hybrid contribution 0.733 1.134 -0.006 1.351 sum -8.639 -6.746 -11.122 15.615 Atomic orbital electron populations 1.20918 0.90490 1.03554 1.02893 1.20193 0.96669 0.92712 0.89157 1.20506 0.92348 0.98888 1.13959 1.21964 0.93657 0.89645 0.92326 1.45028 1.07317 1.07253 1.59254 1.21831 0.79573 1.07068 0.97160 1.20460 0.83243 0.77204 0.90699 1.90752 1.55437 1.49010 1.45234 1.45894 1.05879 1.74049 1.09665 1.22521 0.93910 1.00144 0.81457 0.89320 1.21504 0.85681 0.88060 0.99615 1.44436 1.04995 1.11950 1.71503 1.18980 0.93300 0.89433 1.34096 0.90527 1.24804 0.95862 0.98463 1.01200 1.69951 1.05264 1.32941 1.48509 0.86221 0.78019 0.83401 0.78209 1.21267 1.21635 1.21191 1.21636 0.95077 0.86385 0.95193 1.22021 0.95377 0.95323 0.96360 1.21602 1.00324 1.01107 0.95359 1.21674 1.01324 0.97707 0.98156 1.17059 0.89320 0.82436 0.78641 1.90935 1.69205 1.30312 1.53380 1.21874 0.92290 0.99430 1.13787 0.90241 0.90900 0.90749 0.83749 0.81984 0.85530 0.86123 0.76847 0.93499 0.92830 0.93668 0.94064 0.96669 0.93322 0.92836 0.91214 0.93072 0.92630 0.92790 0.83734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.84 10.03 36.01 0.36 -0.48 16 2 C 0.02 0.17 5.89 -104.55 -0.62 -0.45 16 3 C -0.23 -2.29 9.71 -39.87 -0.39 -2.68 16 4 C 0.15 1.66 10.28 -16.84 -0.17 1.48 16 5 N -0.48 -6.45 2.07 -121.06 -0.25 -6.70 16 6 C 0.07 0.85 5.81 -5.20 -0.03 0.82 16 7 C 0.50 8.37 7.89 -10.99 -0.09 8.29 16 8 O -0.53 -11.24 16.07 5.55 0.09 -11.15 16 9 N -0.70 -11.27 4.45 -52.03 -0.23 -11.50 16 10 C 0.12 2.35 2.59 -66.09 -0.17 2.18 16 11 H 0.09 1.81 7.45 -51.93 -0.39 1.43 16 12 C 0.18 4.23 4.79 -3.07 -0.01 4.22 16 13 N -0.60 -14.61 3.38 -170.07 -0.57 -15.18 16 14 C -0.23 -6.20 10.28 -15.06 -0.15 -6.35 16 15 H 0.08 1.99 7.83 -52.49 -0.41 1.58 16 16 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 17 N -0.92 -26.74 10.31 55.49 0.57 -26.17 16 18 Si 0.91 21.77 29.55 -169.99 -5.02 16.74 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 22 C 0.14 2.76 6.12 -2.53 -0.02 2.74 16 23 C -0.09 -1.47 0.83 -152.36 -0.13 -1.60 16 24 C -0.13 -2.05 8.57 37.16 0.32 -1.73 16 25 C -0.13 -1.72 8.22 37.15 0.31 -1.42 16 26 C 0.52 8.25 7.40 -15.44 -0.11 8.14 16 27 O -0.56 -10.58 16.64 4.86 0.08 -10.50 16 28 C -0.25 -3.27 9.65 -39.37 -0.38 -3.65 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.48 8.09 -51.93 -0.42 0.06 16 31 H 0.07 0.44 8.10 -51.93 -0.42 0.02 16 32 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.16 1.35 8.04 -52.49 -0.42 0.93 16 34 H 0.13 1.45 7.39 -51.93 -0.38 1.06 16 35 H 0.12 1.02 8.01 -51.92 -0.42 0.61 16 36 H 0.40 5.28 7.11 -40.82 -0.29 4.99 16 37 H 0.05 1.27 7.41 -51.93 -0.38 0.88 16 38 H 0.05 1.47 7.38 -51.93 -0.38 1.09 16 39 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 40 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.02 0.29 7.98 -51.93 -0.41 -0.13 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 45 H 0.05 0.61 6.48 -51.93 -0.34 0.27 16 46 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 48 H 0.14 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 389.74 15.07 5.87 5.87 Total: -1.00 -36.18 389.74 -8.44 -44.61 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.59 Total: 4.74 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: -1.38 Total: 9.23 kcal Atomic # 7 Polarization: -59.06 SS G_CDS: -0.49 Total: -59.55 kcal Atomic # 8 Polarization: -21.82 SS G_CDS: 0.17 Total: -21.65 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.18 -8.44 -44.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975099546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.203 kcal (2) G-P(sol) polarization free energy of solvation -36.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds