Wall clock time and date at job start Tue Mar 31 2020 18:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40197 * 120.36625 * 2 1 4 4 C 1.35355 * 119.94699 * 179.97438 * 3 2 1 5 5 N 1.35766 * 120.70307 * 0.25948 * 4 3 2 6 6 C 1.46492 * 119.62590 * 179.72151 * 5 4 3 7 7 C 1.50692 * 109.47356 * 89.99514 * 6 5 4 8 8 O 1.21285 * 119.99976 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00258 * 179.97438 * 7 6 5 10 10 C 1.46503 * 120.00134 * 180.02562 * 9 7 6 11 11 H 1.08999 * 110.63906 * 31.86119 * 10 9 7 12 12 C 1.54322 * 110.71842 * 268.52548 * 10 9 7 13 13 N 1.47022 * 107.27233 * 263.82826 * 12 10 9 14 14 C 1.36940 * 125.64990 * 181.10816 * 13 12 10 15 15 H 1.07998 * 120.00157 * 179.97438 * 14 13 12 16 16 C 1.38808 * 119.99860 * 359.94685 * 14 13 12 17 17 N 1.31622 * 120.00306 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00023 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47115 * 59.99760 * 18 16 14 20 20 H 1.48504 * 109.47457 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47003 * 300.00083 * 18 16 14 22 22 C 1.47428 * 108.70359 * 1.05791 * 13 12 10 23 23 C 1.54903 * 104.83298 * 335.87545 * 22 13 12 24 24 C 1.53009 * 111.00347 * 278.93199 * 23 22 13 25 25 C 1.52993 * 111.00793 * 155.08063 * 23 22 13 26 26 C 1.34658 * 120.74891 * 359.47837 * 5 4 3 27 27 O 1.22059 * 119.98611 * 180.23512 * 26 5 4 28 28 C 1.36403 * 120.36810 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47025 * 90.00043 * 1 2 3 30 30 H 1.08998 * 109.46958 * 209.99316 * 1 2 3 31 31 H 1.09000 * 109.46938 * 329.99945 * 1 2 3 32 32 H 1.08002 * 120.02826 * 0.02562 * 3 2 1 33 33 H 1.08002 * 119.64507 * 179.97438 * 4 3 2 34 34 H 1.09004 * 109.47215 * 210.00187 * 6 5 4 35 35 H 1.09008 * 109.47166 * 329.99496 * 6 5 4 36 36 H 0.97005 * 120.00175 * 0.02562 * 9 7 6 37 37 H 1.09002 * 109.88718 * 23.24814 * 12 10 9 38 38 H 1.09005 * 109.88381 * 144.41632 * 12 10 9 39 39 H 0.96994 * 120.00065 * 180.02562 * 17 16 14 40 40 H 1.08994 * 110.36824 * 217.02876 * 22 13 12 41 41 H 1.09005 * 110.45506 * 94.75423 * 22 13 12 42 42 H 1.09000 * 109.47222 * 172.19609 * 24 23 22 43 43 H 1.08993 * 109.46785 * 292.19812 * 24 23 22 44 44 H 1.08997 * 109.46869 * 52.19468 * 24 23 22 45 45 H 1.09000 * 109.47063 * 307.79849 * 25 23 22 46 46 H 1.09000 * 109.47050 * 67.79885 * 25 23 22 47 47 H 1.08999 * 109.47350 * 187.80191 * 25 23 22 48 48 H 1.08001 * 120.34721 * 0.04835 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2157 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2539 0.0273 -0.0042 6 6 5.7187 0.0442 -0.0097 7 6 6.2264 0.0475 1.4091 8 8 5.4418 0.0363 2.3339 9 7 7.5523 0.0617 1.6504 10 6 8.0458 0.0643 3.0298 11 1 7.3656 -0.4831 3.6822 12 6 8.2487 1.5086 3.5343 13 7 9.6669 1.8437 3.3402 14 6 10.2608 3.0296 3.6811 15 1 11.3144 3.1785 3.4969 16 6 9.5082 4.0406 4.2628 17 7 8.2238 3.8596 4.4863 18 14 10.3180 5.6586 4.7272 19 1 10.8914 6.2918 3.5124 20 1 9.3056 6.5649 5.3263 21 1 11.4008 5.4056 5.7114 22 6 10.3443 0.6910 2.7188 23 6 9.4760 -0.5331 3.1022 24 6 9.7989 -1.0124 4.5189 25 6 9.6486 -1.6668 2.0895 26 6 3.6018 -1.1508 0.0010 27 8 4.2313 -2.1965 0.0009 28 6 2.1966 -1.1769 0.0005 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5137 31 1 -0.3633 0.8900 0.5138 32 1 1.6822 2.1487 0.0004 33 1 4.1103 2.1344 0.0001 34 1 6.0903 -0.8406 -0.5267 35 1 6.0699 0.9393 -0.5234 36 1 8.1798 0.0703 0.9107 37 1 7.6241 2.1930 2.9603 38 1 7.9947 1.5707 4.5925 39 1 7.6979 4.5661 4.8925 40 1 11.3520 0.5819 3.1196 41 1 10.3782 0.8077 1.6355 42 1 9.0840 -1.7803 4.8146 43 1 10.8069 -1.4265 4.5414 44 1 9.7359 -0.1719 5.2100 45 1 9.4805 -1.2836 1.0830 46 1 10.6597 -2.0675 2.1615 47 1 8.9286 -2.4570 2.3023 48 1 1.6683 -2.1189 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975099546.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:11:22 Heat of formation + Delta-G solvation = -33.617813 kcal Electronic energy + Delta-G solvation = -29547.509539 eV Core-core repulsion = 25602.742600 eV Total energy + Delta-G solvation = -3944.766939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.52824 -41.11633 -39.42671 -38.09028 -36.22806 -35.70516 -34.58307 -32.60793 -31.56163 -30.59968 -29.72846 -28.29915 -27.65163 -27.25937 -25.07963 -24.66225 -22.88535 -22.18998 -21.53804 -20.27352 -18.72292 -18.63685 -18.52765 -18.42643 -17.16022 -17.00043 -16.71685 -16.36060 -16.06421 -15.63387 -15.47561 -15.18636 -15.10082 -14.94925 -14.71681 -14.15673 -14.09533 -13.83856 -13.60599 -13.47058 -13.35029 -13.15725 -13.04589 -12.97985 -12.88553 -12.78006 -12.64794 -12.60488 -12.46541 -12.16894 -11.87116 -11.76458 -11.56829 -11.34359 -11.27609 -11.08422 -10.74219 -10.55524 -10.05363 -8.99235 -8.88194 -7.82339 -5.18831 -0.12624 0.91159 1.45711 1.46909 1.48814 1.50839 1.55155 2.16771 2.50305 2.69999 3.35897 3.46387 3.60982 3.64903 3.71780 3.75407 3.87383 3.95132 4.04680 4.08237 4.15295 4.33007 4.37492 4.38903 4.49704 4.65969 4.78245 4.81088 4.84114 4.87341 4.90387 4.93790 5.02054 5.09690 5.11106 5.14767 5.23574 5.26662 5.32853 5.46729 5.48016 5.52989 5.64363 5.69171 5.73059 6.05559 6.18128 6.47048 6.96174 7.08924 7.17544 7.78580 8.43029 9.26656 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013200 B = 0.003311 C = 0.002792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.647778 B = 8455.419472 C =10026.730031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.032 3.968 3 C -0.230 4.230 4 C 0.135 3.865 5 N -0.482 5.482 6 C 0.076 3.924 7 C 0.496 3.504 8 O -0.581 6.581 9 N -0.692 5.692 10 C 0.138 3.862 11 H 0.068 0.932 12 C 0.197 3.803 13 N -0.619 5.619 14 C -0.236 4.236 15 H 0.086 0.914 16 C -0.067 4.067 17 N -0.952 5.952 18 Si 0.977 3.023 19 H -0.274 1.274 20 H -0.299 1.299 21 H -0.279 1.279 22 C 0.139 3.861 23 C -0.076 4.076 24 C -0.125 4.125 25 C -0.124 4.124 26 C 0.504 3.496 27 O -0.607 6.607 28 C -0.288 4.288 29 H 0.101 0.899 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.179 0.821 33 H 0.190 0.810 34 H 0.138 0.862 35 H 0.166 0.834 36 H 0.414 0.586 37 H 0.008 0.992 38 H 0.002 0.998 39 H 0.243 0.757 40 H 0.048 0.952 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 -7.054 -14.075 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.028 3.972 3 C -0.252 4.252 4 C 0.009 3.991 5 N -0.191 5.191 6 C -0.049 4.049 7 C 0.282 3.718 8 O -0.460 6.460 9 N -0.344 5.344 10 C 0.031 3.969 11 H 0.086 0.914 12 C 0.071 3.929 13 N -0.345 5.345 14 C -0.365 4.365 15 H 0.104 0.896 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.805 3.195 19 H -0.200 1.200 20 H -0.226 1.226 21 H -0.205 1.205 22 C 0.015 3.985 23 C -0.077 4.077 24 C -0.182 4.182 25 C -0.181 4.181 26 C 0.309 3.691 27 O -0.495 6.495 28 C -0.309 4.309 29 H 0.119 0.881 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.197 0.803 33 H 0.207 0.793 34 H 0.156 0.844 35 H 0.184 0.816 36 H 0.252 0.748 37 H 0.026 0.974 38 H 0.020 0.980 39 H 0.053 0.947 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.050 0.950 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -8.745 -7.522 -13.346 17.640 hybrid contribution 0.508 1.087 0.692 1.385 sum -8.237 -6.435 -12.654 16.413 Atomic orbital electron populations 1.21031 0.87726 1.04530 1.04464 1.20638 0.98644 0.91920 0.86007 1.21035 0.92196 1.00052 1.11882 1.22593 0.94620 0.89683 0.92214 1.45072 1.07811 1.07491 1.58753 1.21977 0.79255 1.09737 0.93976 1.21307 0.82802 0.75522 0.92195 1.90728 1.56666 1.51246 1.47370 1.45702 1.06340 1.73541 1.08858 1.22059 0.95391 0.96649 0.82756 0.91367 1.21044 0.85334 0.90412 0.96159 1.44656 1.05411 1.12760 1.71665 1.19422 0.93808 0.90344 1.32955 0.89575 1.25635 0.96401 1.01946 1.02021 1.70212 1.06714 1.33384 1.49845 0.85181 0.76847 0.79325 0.78137 1.20003 1.22587 1.20506 1.21884 0.95314 0.85453 0.95894 1.21992 0.92342 0.95648 0.97750 1.21597 1.02276 1.00014 0.94339 1.21644 1.02872 0.96069 0.97559 1.17525 0.90365 0.82508 0.78670 1.90879 1.70203 1.31935 1.56516 1.21926 0.91445 1.00816 1.16737 0.88117 0.90657 0.89057 0.80350 0.79334 0.84437 0.81627 0.74838 0.97408 0.97962 0.94739 0.93417 0.94458 0.92224 0.90223 0.94985 0.91356 0.90276 0.92607 0.83662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.36 10.03 71.24 0.71 -0.64 16 2 C 0.03 0.61 5.89 -19.82 -0.12 0.50 16 3 C -0.23 -3.95 9.71 22.08 0.21 -3.74 16 4 C 0.13 2.73 10.28 83.42 0.86 3.58 16 5 N -0.48 -12.75 2.07 -655.07 -1.36 -14.11 16 6 C 0.08 1.77 5.81 85.63 0.50 2.26 16 7 C 0.50 16.66 7.89 87.65 0.69 17.35 16 8 O -0.58 -25.70 16.07 -3.05 -0.05 -25.75 16 9 N -0.69 -21.82 4.45 -436.91 -1.95 -23.77 16 10 C 0.14 5.31 2.59 46.18 0.12 5.43 16 11 H 0.07 2.94 7.45 -2.39 -0.02 2.92 16 12 C 0.20 9.90 4.79 86.73 0.42 10.31 16 13 N -0.62 -30.39 3.38 -691.99 -2.34 -32.73 16 14 C -0.24 -12.84 10.28 84.03 0.86 -11.97 16 15 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 16 C -0.07 -3.79 5.49 84.86 0.47 -3.33 16 17 N -0.95 -57.95 10.31 21.65 0.22 -57.73 16 18 Si 0.98 45.37 29.55 68.60 2.03 47.39 16 19 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 20 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 22 C 0.14 5.13 6.12 86.85 0.53 5.66 16 23 C -0.08 -2.41 0.83 -50.79 -0.04 -2.45 16 24 C -0.12 -3.95 8.57 71.99 0.62 -3.34 16 25 C -0.12 -2.85 8.22 71.98 0.59 -2.25 16 26 C 0.50 16.31 7.40 84.82 0.63 16.94 16 27 O -0.61 -24.17 16.64 -5.51 -0.09 -24.27 16 28 C -0.29 -7.57 9.65 22.40 0.22 -7.36 16 29 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.85 8.09 -2.39 -0.02 0.83 16 31 H 0.09 0.76 8.10 -2.39 -0.02 0.74 16 32 H 0.18 1.82 8.06 -2.91 -0.02 1.79 16 33 H 0.19 2.67 8.04 -2.91 -0.02 2.65 16 34 H 0.14 2.97 7.39 -2.38 -0.02 2.96 16 35 H 0.17 2.31 8.01 -2.38 -0.02 2.29 16 36 H 0.41 10.11 7.11 -92.70 -0.66 9.45 16 37 H 0.01 0.44 7.41 -2.39 -0.02 0.43 16 38 H 0.00 0.13 7.38 -2.38 -0.02 0.11 16 39 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 40 H 0.05 1.71 8.05 -2.39 -0.02 1.70 16 41 H 0.04 1.25 7.98 -2.38 -0.02 1.23 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 44 H 0.03 1.24 7.91 -2.39 -0.02 1.22 16 45 H 0.07 1.35 6.48 -2.39 -0.02 1.33 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.50 16 47 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -85.97 389.74 4.03 -81.94 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: 0.30 Total: 22.04 kcal Atomic # 6 Polarization: 19.70 SS G_CDS: 7.27 Total: 26.97 kcal Atomic # 7 Polarization: -122.91 SS G_CDS: -5.42 Total: -128.33 kcal Atomic # 8 Polarization: -49.87 SS G_CDS: -0.14 Total: -50.01 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -85.97 4.03 -81.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975099546.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.320 kcal (2) G-P(sol) polarization free energy of solvation -85.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds