Wall clock time and date at job start Tue Mar 31 2020 17:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37994 * 120.81618 * 2 1 4 4 C 1.39127 * 119.26283 * 180.27574 * 3 2 1 5 5 O 1.35500 * 119.52640 * 179.71981 * 4 3 2 6 6 N 1.32435 * 120.94881 * 359.69878 * 4 3 2 7 7 C 1.31638 * 121.79998 * 0.02562 * 6 4 3 8 8 C 1.50702 * 119.68586 * 180.02562 * 7 6 4 9 9 C 1.39564 * 120.62602 * 359.97438 * 7 6 4 10 10 C 1.47613 * 120.50102 * 179.97438 * 9 7 6 11 11 O 1.21580 * 119.99589 * 90.00125 * 10 9 7 12 12 N 1.34771 * 120.00200 * 270.00550 * 10 9 7 13 13 C 1.46502 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.63997 * 36.68694 * 13 12 10 15 15 C 1.54322 * 110.72217 * 273.54400 * 13 12 10 16 16 N 1.47019 * 107.27223 * 263.83293 * 15 13 12 17 17 C 1.36932 * 125.65152 * 181.03573 * 16 15 13 18 18 H 1.08002 * 120.00173 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99942 * 0.02575 * 17 16 15 20 20 N 1.31615 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47161 * 59.99794 * 21 19 17 23 23 H 1.48499 * 109.47029 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47246 * 299.99751 * 21 19 17 25 25 C 1.47426 * 108.70209 * 1.05519 * 16 15 13 26 26 C 1.54910 * 104.83209 * 335.87354 * 25 16 15 27 27 C 1.52999 * 111.00558 * 155.08511 * 26 25 16 28 28 C 1.53003 * 111.00362 * 278.93333 * 26 25 16 29 29 H 1.09007 * 109.47206 * 270.26639 * 1 2 3 30 30 H 1.08997 * 109.47712 * 30.27365 * 1 2 3 31 31 H 1.09000 * 109.47035 * 150.27699 * 1 2 3 32 32 H 1.08002 * 120.37441 * 0.02562 * 3 2 1 33 33 H 0.96697 * 113.99977 * 269.97258 * 5 4 3 34 34 H 1.09011 * 109.46607 * 269.97504 * 8 7 6 35 35 H 1.08994 * 109.47382 * 29.97292 * 8 7 6 36 36 H 1.09004 * 109.47229 * 149.97976 * 8 7 6 37 37 H 0.97000 * 120.00007 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.88768 * 144.41035 * 15 13 12 39 39 H 1.09003 * 109.87844 * 23.24538 * 15 13 12 40 40 H 0.97001 * 119.99871 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36718 * 94.71247 * 25 16 15 42 42 H 1.09005 * 110.36600 * 217.03808 * 25 16 15 43 43 H 1.09001 * 109.46968 * 61.44814 * 27 26 25 44 44 H 1.09000 * 109.47530 * 181.45632 * 27 26 25 45 45 H 1.09008 * 109.47168 * 301.45670 * 27 26 25 46 46 H 1.08999 * 109.46945 * 58.54584 * 28 26 25 47 47 H 1.09000 * 109.46803 * 178.54170 * 28 26 25 48 48 H 1.08991 * 109.47274 * 298.54850 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1474 -0.0058 5 8 4.3042 2.3079 -0.0116 6 7 4.2547 -0.0064 -0.0054 7 6 3.6205 -1.1599 0.0000 8 6 4.4081 -2.4447 0.0009 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4993 0.0116 11 8 1.2300 -3.0306 1.0668 12 7 1.1889 -3.0928 -1.1530 13 6 0.4863 -4.3784 -1.1474 14 1 -0.2291 -4.4218 -0.3262 15 6 1.4890 -5.5483 -1.0605 16 7 1.7278 -6.0214 -2.4318 17 6 2.5429 -7.0631 -2.7861 18 1 2.6523 -7.3337 -3.8259 19 6 3.2287 -7.7713 -1.8087 20 7 3.0958 -7.4411 -0.5416 21 14 4.3412 -9.1918 -2.2921 22 1 5.4119 -8.6972 -3.1946 23 1 4.9538 -9.7779 -1.0729 24 1 3.5430 -10.2293 -2.9932 25 6 0.9446 -5.1883 -3.3624 26 6 -0.2181 -4.6249 -2.5077 27 6 -0.7471 -3.3156 -3.0965 28 6 -1.3421 -5.6531 -2.3650 29 1 -0.3634 0.0048 1.0277 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6935 2.1315 0.0004 33 1 4.5038 2.6424 -0.8967 34 1 4.5940 -2.7575 -1.0267 35 1 5.3588 -2.2878 0.5105 36 1 3.8412 -3.2182 0.5192 37 1 1.4178 -2.6688 -1.9948 38 1 1.0679 -6.3535 -0.4585 39 1 2.4241 -5.2029 -0.6194 40 1 3.5753 -7.9357 0.1413 41 1 1.5577 -4.3756 -3.7517 42 1 0.5551 -5.7958 -4.1794 43 1 -1.1350 -3.4985 -4.0987 44 1 -1.5452 -2.9285 -2.4630 45 1 0.0620 -2.5870 -3.1476 46 1 -0.9491 -6.5594 -1.9042 47 1 -2.1338 -5.2413 -1.7391 48 1 -1.7440 -5.8911 -3.3497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000977634591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:48 Heat of formation + Delta-G solvation = -19.028242 kcal Electronic energy + Delta-G solvation = -30222.249075 eV Core-core repulsion = 26278.114787 eV Total energy + Delta-G solvation = -3944.134288 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.00379 -39.60600 -38.09049 -37.09189 -34.42594 -33.89838 -33.05165 -31.73695 -30.71769 -28.46813 -28.20488 -27.55032 -26.70826 -25.65071 -24.11914 -23.06641 -21.41252 -20.82075 -19.95959 -18.94345 -18.54299 -17.44356 -17.28445 -16.69802 -16.06871 -15.73294 -14.86166 -14.56426 -14.27364 -14.06910 -13.93501 -13.83701 -13.73523 -13.42582 -13.31202 -13.26326 -12.86866 -12.53515 -12.27028 -12.20669 -12.05883 -12.04507 -11.90358 -11.72395 -11.69890 -11.42141 -11.12341 -11.01159 -10.77264 -10.44488 -10.30690 -10.04381 -9.95165 -9.89904 -9.68684 -9.64760 -9.39551 -8.88213 -8.64705 -8.51526 -6.83691 -5.69544 -3.04381 0.67176 1.00390 2.80090 3.14620 3.40581 3.45227 3.47083 3.51248 3.52981 4.34532 4.39847 4.49762 4.77883 4.88062 4.89983 5.04748 5.20075 5.22754 5.25189 5.34664 5.40349 5.49493 5.52354 5.59964 5.72784 5.75846 5.80319 5.85704 5.93688 5.98285 6.02584 6.11804 6.14066 6.16719 6.19256 6.35088 6.40671 6.53917 6.57920 6.63730 6.67530 6.90410 7.24783 7.52971 7.61207 7.74767 7.78667 7.87281 8.24871 8.48256 9.21636 9.82195 10.47319 11.40920 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003979 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.975769 B = 7035.732954 C = 8417.747747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.009 3.991 3 C -0.200 4.200 4 C 0.327 3.673 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.201 3.799 8 C -0.115 4.115 9 C -0.187 4.187 10 C 0.570 3.430 11 O -0.526 6.526 12 N -0.700 5.700 13 C 0.122 3.878 14 H 0.088 0.912 15 C 0.176 3.824 16 N -0.602 5.602 17 C -0.232 4.232 18 H 0.076 0.924 19 C -0.004 4.004 20 N -0.917 5.917 21 Si 0.909 3.091 22 H -0.286 1.286 23 H -0.290 1.290 24 H -0.286 1.286 25 C 0.144 3.856 26 C -0.089 4.089 27 C -0.132 4.132 28 C -0.125 4.125 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.401 0.599 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.396 0.604 38 H 0.054 0.946 39 H 0.050 0.950 40 H 0.253 0.747 41 H 0.015 0.985 42 H 0.041 0.959 43 H 0.055 0.945 44 H 0.053 0.947 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.047 0.953 48 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.511 17.378 -3.460 18.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.001 3.999 3 C -0.221 4.221 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.063 3.937 8 C -0.172 4.172 9 C -0.192 4.192 10 C 0.354 3.646 11 O -0.402 6.402 12 N -0.351 5.351 13 C 0.018 3.982 14 H 0.106 0.894 15 C 0.051 3.949 16 N -0.328 5.328 17 C -0.360 4.360 18 H 0.094 0.906 19 C -0.201 4.201 20 N -0.564 5.564 21 Si 0.740 3.260 22 H -0.213 1.213 23 H -0.216 1.216 24 H -0.212 1.212 25 C 0.018 3.982 26 C -0.090 4.090 27 C -0.190 4.190 28 C -0.183 4.183 29 H 0.103 0.897 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.161 0.839 33 H 0.259 0.741 34 H 0.109 0.891 35 H 0.102 0.898 36 H 0.107 0.893 37 H 0.231 0.769 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.032 0.968 42 H 0.059 0.941 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.066 0.934 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.703 16.829 -1.976 17.879 hybrid contribution 0.121 -0.321 -1.064 1.118 sum -5.581 16.508 -3.041 17.689 Atomic orbital electron populations 1.20922 0.89410 1.03745 1.03774 1.20184 0.96871 0.90878 0.91997 1.21808 0.93688 0.99184 1.07465 1.19255 0.87016 0.85058 0.93853 1.84728 1.76112 1.34185 1.33898 1.67022 1.41875 0.97813 1.16000 1.21188 0.89324 0.93146 0.90064 1.20929 1.00510 0.91377 1.04408 1.20824 0.94932 0.94616 1.08827 1.17744 0.78712 0.83603 0.84522 1.90837 1.53713 1.64758 1.30908 1.46101 1.58563 1.22783 1.07681 1.22539 0.95163 0.83440 0.97082 0.89383 1.21521 0.95360 0.91184 0.86864 1.44411 1.52029 1.35230 1.01145 1.18959 1.18657 1.05705 0.92661 0.90597 1.24781 1.00366 0.99572 0.95379 1.69937 1.45593 1.42080 0.98832 0.86250 0.80515 0.82250 0.77004 1.21269 1.21621 1.21239 1.21622 0.90242 0.93523 0.92846 1.22009 0.96121 0.95426 0.95493 1.21694 1.00290 0.96417 1.00559 1.21589 0.96281 0.99154 1.01249 0.89656 0.90407 0.90484 0.83851 0.74115 0.89141 0.89843 0.89285 0.76862 0.92789 0.93229 0.93611 0.96779 0.94104 0.92544 0.92814 0.93147 0.91214 0.93386 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.15 9.69 36.01 0.35 -0.80 16 2 C 0.01 0.10 5.95 -103.96 -0.62 -0.51 16 3 C -0.20 -2.15 9.73 -39.34 -0.38 -2.53 16 4 C 0.33 4.08 7.74 -16.96 -0.13 3.95 16 5 O -0.48 -4.92 13.55 -18.19 -0.25 -5.17 16 6 N -0.51 -7.57 10.28 -9.20 -0.09 -7.66 16 7 C 0.20 3.10 6.82 -82.18 -0.56 2.54 16 8 C -0.12 -1.81 9.78 36.01 0.35 -1.46 16 9 C -0.19 -2.76 5.65 -104.83 -0.59 -3.35 16 10 C 0.57 9.65 4.32 -12.44 -0.05 9.59 16 11 O -0.53 -10.97 16.83 5.30 0.09 -10.88 16 12 N -0.70 -11.05 4.54 -53.05 -0.24 -11.29 16 13 C 0.12 2.19 2.51 -66.10 -0.17 2.03 16 14 H 0.09 1.64 7.60 -51.93 -0.39 1.24 16 15 C 0.18 4.13 4.73 -3.07 -0.01 4.12 16 16 N -0.60 -14.41 3.38 -170.07 -0.58 -14.98 16 17 C -0.23 -6.21 10.28 -15.06 -0.15 -6.37 16 18 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 19 C 0.00 -0.12 5.49 -17.43 -0.10 -0.21 16 20 N -0.92 -26.56 10.31 55.49 0.57 -25.99 16 21 Si 0.91 21.84 29.55 -169.99 -5.02 16.81 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C 0.14 2.72 6.14 -2.53 -0.02 2.70 16 26 C -0.09 -1.38 0.83 -152.36 -0.13 -1.51 16 27 C -0.13 -1.55 8.35 37.16 0.31 -1.24 16 28 C -0.13 -1.88 8.61 37.16 0.32 -1.56 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 31 H 0.08 0.78 7.18 -51.93 -0.37 0.41 16 32 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.40 1.94 9.06 45.56 0.41 2.35 16 34 H 0.09 1.39 8.14 -51.92 -0.42 0.96 16 35 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.09 1.61 7.06 -51.93 -0.37 1.24 16 37 H 0.40 5.53 6.81 -40.82 -0.28 5.25 16 38 H 0.05 1.45 7.38 -51.93 -0.38 1.07 16 39 H 0.05 1.33 7.41 -51.93 -0.38 0.94 16 40 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 41 H 0.01 0.27 8.04 -51.93 -0.42 -0.15 16 42 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.55 6.17 -51.92 -0.32 0.23 16 46 H 0.07 1.26 7.81 -51.93 -0.41 0.85 16 47 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 48 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 388.23 15.07 5.85 5.85 Total: -1.00 -33.40 388.23 -7.93 -41.33 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -6.68 Total: 6.60 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.58 Total: 5.37 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -0.34 Total: -59.92 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.16 Total: -16.04 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.40 -7.93 -41.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977634591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.297 kcal (2) G-P(sol) polarization free energy of solvation -33.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.326 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds