Wall clock time and date at job start Tue Mar 31 2020 17:49:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37994 * 120.81618 * 2 1 4 4 C 1.39127 * 119.26283 * 180.27574 * 3 2 1 5 5 O 1.35500 * 119.52640 * 179.71981 * 4 3 2 6 6 N 1.32435 * 120.94881 * 359.69878 * 4 3 2 7 7 C 1.31638 * 121.79998 * 0.02562 * 6 4 3 8 8 C 1.50702 * 119.68586 * 180.02562 * 7 6 4 9 9 C 1.39564 * 120.62602 * 359.97438 * 7 6 4 10 10 C 1.47613 * 120.50102 * 179.97438 * 9 7 6 11 11 O 1.21580 * 119.99589 * 90.00125 * 10 9 7 12 12 N 1.34771 * 120.00200 * 270.00550 * 10 9 7 13 13 C 1.46502 * 119.99933 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.63997 * 36.68694 * 13 12 10 15 15 C 1.54322 * 110.72217 * 273.54400 * 13 12 10 16 16 N 1.47019 * 107.27223 * 263.83293 * 15 13 12 17 17 C 1.36932 * 125.65152 * 181.03573 * 16 15 13 18 18 H 1.08002 * 120.00173 * 180.02562 * 17 16 15 19 19 C 1.38818 * 119.99942 * 0.02575 * 17 16 15 20 20 N 1.31615 * 119.99835 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 119.99957 * 180.02562 * 19 17 16 22 22 H 1.48509 * 109.47161 * 59.99794 * 21 19 17 23 23 H 1.48499 * 109.47029 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47246 * 299.99751 * 21 19 17 25 25 C 1.47426 * 108.70209 * 1.05519 * 16 15 13 26 26 C 1.54910 * 104.83209 * 335.87354 * 25 16 15 27 27 C 1.52999 * 111.00558 * 155.08511 * 26 25 16 28 28 C 1.53003 * 111.00362 * 278.93333 * 26 25 16 29 29 H 1.09007 * 109.47206 * 270.26639 * 1 2 3 30 30 H 1.08997 * 109.47712 * 30.27365 * 1 2 3 31 31 H 1.09000 * 109.47035 * 150.27699 * 1 2 3 32 32 H 1.08002 * 120.37441 * 0.02562 * 3 2 1 33 33 H 0.96697 * 113.99977 * 269.97258 * 5 4 3 34 34 H 1.09011 * 109.46607 * 269.97504 * 8 7 6 35 35 H 1.08994 * 109.47382 * 29.97292 * 8 7 6 36 36 H 1.09004 * 109.47229 * 149.97976 * 8 7 6 37 37 H 0.97000 * 120.00007 * 359.97438 * 12 10 9 38 38 H 1.09001 * 109.88768 * 144.41035 * 15 13 12 39 39 H 1.09003 * 109.87844 * 23.24538 * 15 13 12 40 40 H 0.97001 * 119.99871 * 180.02562 * 20 19 17 41 41 H 1.08998 * 110.36718 * 94.71247 * 25 16 15 42 42 H 1.09005 * 110.36600 * 217.03808 * 25 16 15 43 43 H 1.09001 * 109.46968 * 61.44814 * 27 26 25 44 44 H 1.09000 * 109.47530 * 181.45632 * 27 26 25 45 45 H 1.09008 * 109.47168 * 301.45670 * 27 26 25 46 46 H 1.08999 * 109.46945 * 58.54584 * 28 26 25 47 47 H 1.09000 * 109.46803 * 178.54170 * 28 26 25 48 48 H 1.08991 * 109.47274 * 298.54850 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1474 -0.0058 5 8 4.3042 2.3079 -0.0116 6 7 4.2547 -0.0064 -0.0054 7 6 3.6205 -1.1599 0.0000 8 6 4.4081 -2.4447 0.0009 9 6 2.2256 -1.2043 0.0061 10 6 1.5172 -2.4993 0.0116 11 8 1.2300 -3.0306 1.0668 12 7 1.1889 -3.0928 -1.1530 13 6 0.4863 -4.3784 -1.1474 14 1 -0.2291 -4.4218 -0.3262 15 6 1.4890 -5.5483 -1.0605 16 7 1.7278 -6.0214 -2.4318 17 6 2.5429 -7.0631 -2.7861 18 1 2.6523 -7.3337 -3.8259 19 6 3.2287 -7.7713 -1.8087 20 7 3.0958 -7.4411 -0.5416 21 14 4.3412 -9.1918 -2.2921 22 1 5.4119 -8.6972 -3.1946 23 1 4.9538 -9.7779 -1.0729 24 1 3.5430 -10.2293 -2.9932 25 6 0.9446 -5.1883 -3.3624 26 6 -0.2181 -4.6249 -2.5077 27 6 -0.7471 -3.3156 -3.0965 28 6 -1.3421 -5.6531 -2.3650 29 1 -0.3634 0.0048 1.0277 30 1 -0.3634 0.8875 -0.5180 31 1 -0.3633 -0.8925 -0.5095 32 1 1.6935 2.1315 0.0004 33 1 4.5038 2.6424 -0.8967 34 1 4.5940 -2.7575 -1.0267 35 1 5.3588 -2.2878 0.5105 36 1 3.8412 -3.2182 0.5192 37 1 1.4178 -2.6688 -1.9948 38 1 1.0679 -6.3535 -0.4585 39 1 2.4241 -5.2029 -0.6194 40 1 3.5753 -7.9357 0.1413 41 1 1.5577 -4.3756 -3.7517 42 1 0.5551 -5.7958 -4.1794 43 1 -1.1350 -3.4985 -4.0987 44 1 -1.5452 -2.9285 -2.4630 45 1 0.0620 -2.5870 -3.1476 46 1 -0.9491 -6.5594 -1.9042 47 1 -2.1338 -5.2413 -1.7391 48 1 -1.7440 -5.8911 -3.3497 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000977634591.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:49:47 Heat of formation + Delta-G solvation = -45.386801 kcal Electronic energy + Delta-G solvation = -30223.392068 eV Core-core repulsion = 26278.114787 eV Total energy + Delta-G solvation = -3945.277280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11492 -40.94006 -39.44788 -38.10392 -35.69977 -35.37822 -34.50645 -32.84845 -32.58325 -29.98667 -29.06413 -28.78286 -27.94687 -27.36241 -25.51181 -24.43523 -22.46158 -22.32444 -21.52425 -20.29812 -19.45078 -18.70764 -18.65020 -18.29198 -17.45834 -16.79899 -16.62827 -15.91203 -15.70586 -15.47727 -15.35148 -15.18335 -14.81450 -14.73383 -14.31386 -14.23048 -14.01490 -13.82841 -13.71098 -13.45478 -13.42957 -13.12097 -13.10525 -12.97129 -12.96548 -12.82829 -12.64182 -12.62081 -12.55784 -12.17337 -11.84233 -11.73094 -11.50437 -11.31226 -11.22993 -10.71733 -10.62848 -10.53049 -10.05135 -9.91560 -8.85781 -7.80790 -5.16827 -0.33392 0.03625 1.44449 1.45578 1.47821 1.54354 2.05172 2.37125 2.50830 2.55078 3.34866 3.37347 3.45065 3.49819 3.64126 3.76172 3.94633 3.99846 4.08321 4.19773 4.29698 4.36155 4.41158 4.48998 4.52808 4.54455 4.67744 4.71418 4.80911 4.87182 4.90469 4.93872 4.97789 5.05651 5.06753 5.14614 5.15650 5.19738 5.30189 5.37673 5.41400 5.48522 5.58589 5.72184 5.78208 6.20517 6.47090 6.55739 6.79304 7.10439 7.16067 7.81086 8.44988 9.27811 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012753 B = 0.003979 C = 0.003326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2194.975769 B = 7035.732954 C = 8417.747747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.015 3.985 3 C -0.182 4.182 4 C 0.327 3.673 5 O -0.485 6.485 6 N -0.531 5.531 7 C 0.186 3.814 8 C -0.107 4.107 9 C -0.205 4.205 10 C 0.577 3.423 11 O -0.573 6.573 12 N -0.687 5.687 13 C 0.136 3.864 14 H 0.081 0.919 15 C 0.193 3.807 16 N -0.619 5.619 17 C -0.237 4.237 18 H 0.085 0.915 19 C -0.064 4.064 20 N -0.950 5.950 21 Si 0.972 3.028 22 H -0.277 1.277 23 H -0.300 1.300 24 H -0.276 1.276 25 C 0.138 3.862 26 C -0.073 4.073 27 C -0.125 4.125 28 C -0.123 4.123 29 H 0.086 0.914 30 H 0.115 0.885 31 H 0.068 0.932 32 H 0.185 0.815 33 H 0.425 0.575 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.408 0.592 38 H 0.005 0.995 39 H 0.004 0.996 40 H 0.243 0.757 41 H 0.028 0.972 42 H 0.047 0.953 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.028 0.972 47 H 0.070 0.930 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.244 20.773 -5.805 23.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.007 3.993 3 C -0.203 4.203 4 C 0.148 3.852 5 O -0.296 6.296 6 N -0.252 5.252 7 C 0.048 3.952 8 C -0.165 4.165 9 C -0.210 4.210 10 C 0.363 3.637 11 O -0.453 6.453 12 N -0.338 5.338 13 C 0.031 3.969 14 H 0.099 0.901 15 C 0.067 3.933 16 N -0.345 5.345 17 C -0.366 4.366 18 H 0.103 0.897 19 C -0.257 4.257 20 N -0.599 5.599 21 Si 0.801 3.199 22 H -0.203 1.203 23 H -0.227 1.227 24 H -0.202 1.202 25 C 0.013 3.987 26 C -0.075 4.075 27 C -0.182 4.182 28 C -0.181 4.181 29 H 0.104 0.896 30 H 0.134 0.866 31 H 0.087 0.913 32 H 0.202 0.798 33 H 0.287 0.713 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.073 0.927 37 H 0.246 0.754 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.052 0.948 41 H 0.046 0.954 42 H 0.066 0.934 43 H 0.096 0.904 44 H 0.090 0.910 45 H 0.079 0.921 46 H 0.047 0.953 47 H 0.089 0.911 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.445 20.272 -4.414 22.043 hybrid contribution 0.693 -1.274 -0.364 1.496 sum -6.752 18.998 -4.778 20.720 Atomic orbital electron populations 1.21028 0.87274 1.05226 1.04245 1.20516 0.98303 0.89970 0.90530 1.22149 0.92841 1.00216 1.05053 1.19550 0.88007 0.84853 0.92747 1.84687 1.75935 1.32891 1.36090 1.66955 1.42703 0.98375 1.17188 1.20917 0.89533 0.93005 0.91722 1.20747 1.00473 0.91484 1.03759 1.20653 0.94676 0.94436 1.11277 1.18088 0.77670 0.84124 0.83811 1.90808 1.55621 1.66241 1.32585 1.45903 1.58036 1.21655 1.08178 1.22152 0.93599 0.82324 0.98857 0.90058 1.21088 0.94353 0.91743 0.86134 1.44647 1.52231 1.35321 1.02321 1.19398 1.18232 1.06037 0.92980 0.89736 1.25587 1.02386 1.02377 0.95378 1.70208 1.46742 1.43185 0.99742 0.85241 0.78876 0.79482 0.76275 1.20317 1.22684 1.20206 1.21893 0.90948 0.93244 0.92633 1.21983 0.94977 0.97756 0.92745 1.21671 1.01115 0.93719 1.01706 1.21585 0.96533 0.97342 1.02591 0.89594 0.86602 0.91284 0.79782 0.71287 0.89484 0.89303 0.92667 0.75400 0.97650 0.97771 0.94808 0.95403 0.93439 0.90381 0.90961 0.92133 0.95289 0.91077 0.90614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.85 9.69 71.24 0.69 -1.16 16 2 C 0.01 0.31 5.95 -19.43 -0.12 0.20 16 3 C -0.18 -3.19 9.73 22.43 0.22 -2.97 16 4 C 0.33 7.30 7.74 84.82 0.66 7.95 16 5 O -0.49 -8.32 13.55 -88.02 -1.19 -9.51 16 6 N -0.53 -15.45 10.28 -295.88 -3.04 -18.49 16 7 C 0.19 5.84 6.82 42.91 0.29 6.13 16 8 C -0.11 -3.65 9.78 71.24 0.70 -2.95 16 9 C -0.20 -6.01 5.65 -20.00 -0.11 -6.13 16 10 C 0.58 20.13 4.32 86.72 0.37 20.51 16 11 O -0.57 -25.30 16.83 -3.97 -0.07 -25.37 16 12 N -0.69 -21.84 4.54 -440.01 -2.00 -23.83 16 13 C 0.14 5.02 2.51 46.18 0.12 5.13 16 14 H 0.08 3.14 7.60 -2.39 -0.02 3.12 16 15 C 0.19 9.71 4.73 86.73 0.41 10.12 16 16 N -0.62 -30.69 3.38 -691.98 -2.34 -33.03 16 17 C -0.24 -13.10 10.28 84.04 0.86 -12.24 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 19 C -0.06 -3.69 5.49 84.86 0.47 -3.22 16 20 N -0.95 -58.85 10.31 21.65 0.22 -58.63 16 21 Si 0.97 46.42 29.55 68.60 2.03 48.45 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 24 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 25 C 0.14 5.06 6.14 86.86 0.53 5.60 16 26 C -0.07 -2.16 0.83 -50.79 -0.04 -2.21 16 27 C -0.12 -2.42 8.35 71.98 0.60 -1.82 16 28 C -0.12 -3.54 8.61 71.98 0.62 -2.92 16 29 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 30 H 0.12 0.90 8.10 -2.39 -0.02 0.88 16 31 H 0.07 1.19 7.18 -2.39 -0.02 1.17 16 32 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 33 H 0.42 2.59 9.06 -74.06 -0.67 1.92 16 34 H 0.09 2.90 8.14 -2.38 -0.02 2.88 16 35 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 36 H 0.05 2.22 7.06 -2.39 -0.02 2.21 16 37 H 0.41 10.94 6.81 -92.71 -0.63 10.31 16 38 H 0.01 0.32 7.38 -2.39 -0.02 0.30 16 39 H 0.00 0.24 7.41 -2.39 -0.02 0.22 16 40 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 41 H 0.03 0.98 8.04 -2.39 -0.02 0.96 16 42 H 0.05 1.70 8.05 -2.38 -0.02 1.68 16 43 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.06 1.07 6.17 -2.38 -0.01 1.06 16 46 H 0.03 1.05 7.81 -2.39 -0.02 1.04 16 47 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -79.78 388.23 -0.43 -80.22 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -0.31 Total: 20.18 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 6.27 Total: 20.03 kcal Atomic # 7 Polarization: -126.83 SS G_CDS: -7.16 Total: -133.99 kcal Atomic # 8 Polarization: -33.63 SS G_CDS: -1.26 Total: -34.89 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.45 kcal Total: -79.78 -0.43 -80.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000977634591.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.830 kcal (2) G-P(sol) polarization free energy of solvation -79.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds