Wall clock time and date at job start Tue Mar 31 2020 17:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35920 * 117.00598 * 2 1 4 4 C 1.38851 * 120.40172 * 0.02562 * 3 2 1 5 5 N 1.31881 * 121.00092 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.93839 * 0.02562 * 5 4 3 7 7 C 1.39525 * 120.69232 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53235 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00337 * 173.92991 * 8 7 6 10 10 N 1.34780 * 119.99843 * 353.93767 * 8 7 6 11 11 C 1.46503 * 120.00178 * 180.27407 * 10 8 7 12 12 H 1.09002 * 109.46920 * 34.71979 * 11 10 8 13 13 C 1.53002 * 109.46936 * 274.72376 * 11 10 8 14 14 C 1.53001 * 109.47146 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46981 * 59.99730 * 14 13 11 16 16 C 1.53000 * 109.47206 * 299.99785 * 15 14 13 17 17 H 1.09004 * 109.47116 * 179.97438 * 16 15 14 18 18 N 1.46492 * 109.47437 * 300.00448 * 16 15 14 19 19 C 1.36944 * 119.99869 * 275.00062 * 18 16 15 20 20 H 1.08000 * 119.99803 * 359.97438 * 19 18 16 21 21 C 1.38806 * 119.99912 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99731 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47048 * 89.99682 * 23 21 19 25 25 H 1.48500 * 109.47159 * 209.99923 * 23 21 19 26 26 H 1.48503 * 109.46865 * 330.00030 * 23 21 19 27 27 C 1.52993 * 109.47532 * 154.71911 * 11 10 8 28 28 C 1.38837 * 120.40863 * 180.26010 * 3 2 1 29 29 C 1.50706 * 120.87916 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46623 * 299.99721 * 1 2 3 32 32 H 1.09004 * 109.47152 * 59.99310 * 1 2 3 33 33 H 1.08001 * 119.50376 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.65362 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00230 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.46992 * 299.99559 * 13 11 10 37 37 H 1.08998 * 109.47295 * 59.99383 * 13 11 10 38 38 H 1.08997 * 109.47022 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46988 * 299.99772 * 14 13 11 40 40 H 1.09002 * 109.47225 * 60.00188 * 15 14 13 41 41 H 1.09001 * 109.46697 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00627 * 94.99618 * 18 16 15 43 43 H 0.97004 * 119.99402 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.47453 * 300.00367 * 27 11 10 45 45 H 1.09002 * 109.46962 * 60.00094 * 27 11 10 46 46 H 1.08999 * 109.47257 * 263.88436 * 29 28 3 47 47 H 1.08997 * 109.47014 * 23.88795 * 29 28 3 48 48 H 1.09009 * 109.46764 * 143.88401 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2983 2.3809 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1955 3.6890 0.0006 7 6 4.0200 2.5634 0.0000 8 6 5.4912 2.7100 -0.0011 9 8 6.1999 1.7288 0.1098 10 7 6.0466 3.9319 -0.1248 11 6 7.5044 4.0766 -0.1320 12 1 7.9525 3.2161 -0.6287 13 6 8.0159 4.1578 1.3078 14 6 9.5384 4.3083 1.3004 15 6 9.9210 5.5858 0.5504 16 6 9.4096 5.5046 -0.8893 17 1 9.6817 6.4150 -1.4235 18 7 10.0113 4.3477 -1.5568 19 6 11.2452 4.4592 -2.1404 20 1 11.7744 5.4001 -2.1088 21 6 11.8156 3.3629 -2.7724 22 7 13.0013 3.4702 -3.3337 23 14 10.9006 1.7352 -2.8263 24 1 10.0535 1.6836 -4.0449 25 1 11.8787 0.6182 -2.8557 26 1 10.0421 1.6098 -1.6210 27 6 7.8865 5.3543 -0.8818 28 6 3.4321 1.2934 -0.0054 29 6 4.2810 0.0482 -0.0120 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 0.2198 2.3227 0.0005 34 1 3.6369 4.6747 0.0014 35 1 5.4811 4.7150 -0.2135 36 1 7.5678 5.0183 1.8045 37 1 7.7437 3.2475 1.8419 38 1 9.9027 4.3666 2.3260 39 1 9.9862 3.4475 0.8037 40 1 9.4732 6.4466 1.0471 41 1 11.0057 5.6933 0.5456 42 1 9.5359 3.5027 -1.5854 43 1 13.4001 2.7039 -3.7750 44 1 7.5221 5.2965 -1.9074 45 1 7.4384 6.2149 -0.3850 46 1 4.5803 -0.1930 1.0080 47 1 3.7075 -0.7802 -0.4279 48 1 5.1692 0.2172 -0.6210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981172163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:23 Heat of formation + Delta-G solvation = -29.085092 kcal Electronic energy + Delta-G solvation = -29148.247600 eV Core-core repulsion = 25203.677215 eV Total energy + Delta-G solvation = -3944.570385 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36592 -39.94777 -38.57902 -37.92672 -34.88418 -33.86446 -33.20522 -31.35807 -31.10892 -29.36919 -28.54701 -28.09514 -27.79246 -24.42938 -23.36750 -22.81720 -21.98912 -21.74034 -20.73015 -19.01769 -18.27072 -17.88282 -17.60094 -16.74107 -16.65731 -16.41801 -15.87791 -15.22648 -14.80796 -14.60806 -14.54150 -14.09912 -13.99608 -13.93282 -13.58674 -13.28974 -12.99777 -12.96144 -12.74107 -12.52849 -12.45673 -12.23225 -12.21745 -12.04957 -11.90329 -11.60246 -11.04118 -10.87981 -10.75159 -10.40186 -10.30437 -10.17895 -10.10032 -9.85558 -9.77856 -9.52501 -9.47001 -9.00740 -8.85697 -8.82159 -7.23729 -5.74188 -3.09356 0.27378 0.84420 2.57979 2.67680 3.11397 3.42580 3.48332 3.48467 3.51340 3.93633 4.11353 4.36553 4.40635 4.58102 4.63160 4.64667 4.77193 4.87196 4.96803 5.02445 5.08054 5.25428 5.34174 5.41270 5.44125 5.54744 5.58685 5.63541 5.69205 5.76439 5.85592 5.90643 5.97126 5.97487 6.05190 6.17718 6.30752 6.32498 6.40112 6.54667 6.67989 6.71492 6.74481 6.90237 6.98645 7.40153 7.44790 8.02178 8.11162 8.44974 9.23607 9.96528 10.15560 11.44101 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.002979 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.343671 B = 9397.835868 C =10385.366678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.305 6.305 3 C 0.066 3.934 4 C 0.038 3.962 5 N -0.457 5.457 6 C 0.101 3.899 7 C -0.152 4.152 8 C 0.560 3.440 9 O -0.519 6.519 10 N -0.717 5.717 11 C 0.144 3.856 12 H 0.093 0.907 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.136 4.136 16 C 0.185 3.815 17 H 0.061 0.939 18 N -0.746 5.746 19 C -0.241 4.241 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.934 5.934 23 Si 0.877 3.123 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.274 1.274 27 C -0.132 4.132 28 C -0.011 4.011 29 C -0.115 4.115 30 H 0.105 0.895 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.396 0.604 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.067 0.933 42 H 0.361 0.639 43 H 0.259 0.741 44 H 0.070 0.930 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.793 -1.134 9.817 28.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.018 3.982 4 C -0.119 4.119 5 N -0.166 5.166 6 C -0.059 4.059 7 C -0.157 4.157 8 C 0.345 3.655 9 O -0.396 6.396 10 N -0.368 5.368 11 C 0.041 3.959 12 H 0.111 0.889 13 C -0.160 4.160 14 C -0.149 4.149 15 C -0.176 4.176 16 C 0.075 3.925 17 H 0.079 0.921 18 N -0.390 5.390 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.190 4.190 22 N -0.582 5.582 23 Si 0.707 3.293 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.200 1.200 27 C -0.171 4.171 28 C -0.020 4.020 29 C -0.171 4.171 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.179 0.821 35 H 0.231 0.769 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.066 0.934 41 H 0.086 0.914 42 H 0.195 0.805 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.099 0.901 47 H 0.086 0.914 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -26.487 -1.234 9.789 28.265 hybrid contribution -0.689 -1.431 -0.105 1.592 sum -27.176 -2.665 9.684 28.973 Atomic orbital electron populations 1.23160 0.77873 1.04601 1.01578 1.86111 1.21590 1.25470 1.88529 1.19773 0.92332 0.86104 0.99962 1.23065 1.00702 0.87072 1.01030 1.67525 1.11852 1.25976 1.11259 1.22832 0.88739 0.98065 0.96219 1.20792 0.94961 0.93791 1.06136 1.17925 0.86580 0.83786 0.77168 1.90786 1.62940 1.37302 1.48596 1.46095 1.08609 1.08034 1.74024 1.21128 0.77688 1.00241 0.96885 0.88909 1.21870 0.97125 1.01360 0.95690 1.21373 0.93803 1.00107 0.99587 1.22160 1.01800 0.95986 0.97674 1.20135 0.88580 0.91989 0.91783 0.92086 1.42873 1.20430 1.08855 1.66834 1.19061 0.92636 0.98376 1.27018 0.89152 1.24638 0.96509 0.97492 1.00329 1.69702 1.16213 1.30431 1.41887 0.86670 0.79320 0.85235 0.78078 1.21178 1.21728 1.19962 1.22151 0.98784 0.95925 1.00262 1.19882 0.90807 0.96031 0.95243 1.20945 0.99625 0.92466 1.04108 0.87694 0.92329 0.92303 0.82097 0.82100 0.76863 0.92298 0.92170 0.92849 0.90880 0.93434 0.91443 0.80512 0.93119 0.91149 0.91377 0.90067 0.91379 0.88195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 9.82 101.05 0.99 1.10 16 2 O -0.31 -2.74 9.57 -19.49 -0.19 -2.93 16 3 C 0.07 0.68 6.68 -39.13 -0.26 0.41 16 4 C 0.04 0.35 10.21 -17.30 -0.18 0.17 16 5 N -0.46 -4.79 10.34 -12.79 -0.13 -4.92 16 6 C 0.10 1.01 10.69 -17.14 -0.18 0.83 16 7 C -0.15 -1.80 5.89 -104.84 -0.62 -2.42 16 8 C 0.56 7.75 7.69 -12.32 -0.09 7.66 16 9 O -0.52 -8.99 13.17 5.32 0.07 -8.92 16 10 N -0.72 -8.62 5.03 -54.75 -0.28 -8.89 16 11 C 0.14 2.12 2.28 -67.93 -0.16 1.96 16 12 H 0.09 1.73 5.93 -51.93 -0.31 1.42 16 13 C -0.12 -1.73 5.50 -26.73 -0.15 -1.88 16 14 C -0.11 -1.78 5.77 -26.73 -0.15 -1.93 16 15 C -0.14 -2.23 5.61 -26.73 -0.15 -2.38 16 16 C 0.19 3.31 3.10 -67.91 -0.21 3.10 16 17 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 18 N -0.75 -17.03 4.08 -53.40 -0.22 -17.24 16 19 C -0.24 -6.66 10.41 -15.06 -0.16 -6.81 16 20 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 21 C 0.01 0.18 5.50 -17.43 -0.10 0.08 16 22 N -0.93 -29.42 13.97 55.49 0.78 -28.64 16 23 Si 0.88 22.68 27.73 -169.99 -4.71 17.97 16 24 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 25 H -0.29 -7.64 7.11 56.52 0.40 -7.24 16 26 H -0.27 -6.83 6.52 56.52 0.37 -6.46 16 27 C -0.13 -1.86 5.08 -26.71 -0.14 -2.00 16 28 C -0.01 -0.13 5.97 -103.76 -0.62 -0.75 16 29 C -0.12 -1.41 8.69 36.01 0.31 -1.10 16 30 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.20 7.67 -51.93 -0.40 -0.20 16 32 H 0.06 0.21 7.68 -51.93 -0.40 -0.19 16 33 H 0.16 0.97 6.30 -52.49 -0.33 0.64 16 34 H 0.16 1.15 6.46 -52.49 -0.34 0.81 16 35 H 0.40 3.43 6.70 -40.82 -0.27 3.16 16 36 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.07 1.41 7.60 -51.93 -0.39 1.02 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 42 H 0.36 8.38 3.92 -40.82 -0.16 8.22 16 43 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 44 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 0.74 7.45 -51.93 -0.39 0.36 16 48 H 0.10 1.43 5.97 -51.92 -0.31 1.12 16 LS Contribution 376.93 15.07 5.68 5.68 Total: -1.00 -34.24 376.93 -7.97 -42.21 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.12 Total: 9.63 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -1.85 Total: -3.95 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: 0.15 Total: -59.70 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.12 Total: -11.85 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -4.71 Total: 17.97 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.24 -7.97 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981172163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.124 kcal (2) G-P(sol) polarization free energy of solvation -34.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds