Wall clock time and date at job start Tue Mar 31 2020 17:57:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35920 * 117.00598 * 2 1 4 4 C 1.38851 * 120.40172 * 0.02562 * 3 2 1 5 5 N 1.31881 * 121.00092 * 179.97438 * 4 3 2 6 6 C 1.31682 * 121.93839 * 0.02562 * 5 4 3 7 7 C 1.39525 * 120.69232 * 359.97438 * 6 5 4 8 8 C 1.47853 * 120.53235 * 179.97438 * 7 6 5 9 9 O 1.21548 * 120.00337 * 173.92991 * 8 7 6 10 10 N 1.34780 * 119.99843 * 353.93767 * 8 7 6 11 11 C 1.46503 * 120.00178 * 180.27407 * 10 8 7 12 12 H 1.09002 * 109.46920 * 34.71979 * 11 10 8 13 13 C 1.53002 * 109.46936 * 274.72376 * 11 10 8 14 14 C 1.53001 * 109.47146 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46981 * 59.99730 * 14 13 11 16 16 C 1.53000 * 109.47206 * 299.99785 * 15 14 13 17 17 H 1.09004 * 109.47116 * 179.97438 * 16 15 14 18 18 N 1.46492 * 109.47437 * 300.00448 * 16 15 14 19 19 C 1.36944 * 119.99869 * 275.00062 * 18 16 15 20 20 H 1.08000 * 119.99803 * 359.97438 * 19 18 16 21 21 C 1.38806 * 119.99912 * 179.97438 * 19 18 16 22 22 N 1.31626 * 119.99731 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 120.00383 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47048 * 89.99682 * 23 21 19 25 25 H 1.48500 * 109.47159 * 209.99923 * 23 21 19 26 26 H 1.48503 * 109.46865 * 330.00030 * 23 21 19 27 27 C 1.52993 * 109.47532 * 154.71911 * 11 10 8 28 28 C 1.38837 * 120.40863 * 180.26010 * 3 2 1 29 29 C 1.50706 * 120.87916 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.47414 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46623 * 299.99721 * 1 2 3 32 32 H 1.09004 * 109.47152 * 59.99310 * 1 2 3 33 33 H 1.08001 * 119.50376 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.65362 * 180.02562 * 6 5 4 35 35 H 0.97000 * 120.00230 * 359.97438 * 10 8 7 36 36 H 1.09002 * 109.46992 * 299.99559 * 13 11 10 37 37 H 1.08998 * 109.47295 * 59.99383 * 13 11 10 38 38 H 1.08997 * 109.47022 * 179.97438 * 14 13 11 39 39 H 1.09002 * 109.46988 * 299.99772 * 14 13 11 40 40 H 1.09002 * 109.47225 * 60.00188 * 15 14 13 41 41 H 1.09001 * 109.46697 * 179.97438 * 15 14 13 42 42 H 0.97002 * 120.00627 * 94.99618 * 18 16 15 43 43 H 0.97004 * 119.99402 * 179.97438 * 22 21 19 44 44 H 1.08999 * 109.47453 * 300.00367 * 27 11 10 45 45 H 1.09002 * 109.46962 * 60.00094 * 27 11 10 46 46 H 1.08999 * 109.47257 * 263.88436 * 29 28 3 47 47 H 1.08997 * 109.47014 * 23.88795 * 29 28 3 48 48 H 1.09009 * 109.46764 * 143.88401 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2110 0.0000 4 6 1.2983 2.3809 0.0005 5 7 1.8848 3.5621 0.0010 6 6 3.1955 3.6890 0.0006 7 6 4.0200 2.5634 0.0000 8 6 5.4912 2.7100 -0.0011 9 8 6.1999 1.7288 0.1098 10 7 6.0466 3.9319 -0.1248 11 6 7.5044 4.0766 -0.1320 12 1 7.9525 3.2161 -0.6287 13 6 8.0159 4.1578 1.3078 14 6 9.5384 4.3083 1.3004 15 6 9.9210 5.5858 0.5504 16 6 9.4096 5.5046 -0.8893 17 1 9.6817 6.4150 -1.4235 18 7 10.0113 4.3477 -1.5568 19 6 11.2452 4.4592 -2.1404 20 1 11.7744 5.4001 -2.1088 21 6 11.8156 3.3629 -2.7724 22 7 13.0013 3.4702 -3.3337 23 14 10.9006 1.7352 -2.8263 24 1 10.0535 1.6836 -4.0449 25 1 11.8787 0.6182 -2.8557 26 1 10.0421 1.6098 -1.6210 27 6 7.8865 5.3543 -0.8818 28 6 3.4321 1.2934 -0.0054 29 6 4.2810 0.0482 -0.0120 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5140 -0.8899 33 1 0.2198 2.3227 0.0005 34 1 3.6369 4.6747 0.0014 35 1 5.4811 4.7150 -0.2135 36 1 7.5678 5.0183 1.8045 37 1 7.7437 3.2475 1.8419 38 1 9.9027 4.3666 2.3260 39 1 9.9862 3.4475 0.8037 40 1 9.4732 6.4466 1.0471 41 1 11.0057 5.6933 0.5456 42 1 9.5359 3.5027 -1.5854 43 1 13.4001 2.7039 -3.7750 44 1 7.5221 5.2965 -1.9074 45 1 7.4384 6.2149 -0.3850 46 1 4.5803 -0.1930 1.0080 47 1 3.7075 -0.7802 -0.4279 48 1 5.1692 0.2172 -0.6210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981172163.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:22 Heat of formation + Delta-G solvation = -53.393465 kcal Electronic energy + Delta-G solvation = -29149.301690 eV Core-core repulsion = 25203.677215 eV Total energy + Delta-G solvation = -3945.624475 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17362 -40.96235 -39.61437 -38.86639 -36.25324 -34.91642 -34.69008 -33.07839 -32.13879 -30.67311 -29.88467 -28.78999 -28.47725 -25.47275 -25.14293 -23.68809 -23.32158 -22.82850 -21.78767 -20.19964 -19.83866 -19.21841 -18.53633 -17.65306 -17.39559 -17.06937 -16.97240 -16.51615 -16.25061 -15.92598 -15.76262 -15.19537 -15.17093 -15.13218 -14.71646 -14.53174 -14.10682 -14.03806 -13.91315 -13.81483 -13.73040 -13.42318 -13.16604 -12.98833 -12.96448 -12.75477 -12.49287 -12.38717 -12.19926 -12.14368 -11.84540 -11.60812 -11.50470 -11.31296 -11.05562 -10.88900 -10.68323 -10.45202 -10.03710 -9.55160 -9.26082 -8.02428 -5.31660 -0.53887 0.06890 1.32370 1.35865 1.40653 1.71338 1.84052 2.28849 2.45025 2.66147 3.24963 3.30229 3.39280 3.59172 3.60800 3.62587 3.80872 3.92376 4.00888 4.07836 4.13987 4.32121 4.35005 4.38910 4.41503 4.50510 4.54785 4.61387 4.65884 4.67369 4.75754 4.75977 4.80357 4.97939 5.00346 5.10573 5.12164 5.16191 5.29245 5.34359 5.42491 5.44575 5.58187 5.62642 5.82879 6.12430 6.23719 6.46122 6.69817 7.10409 7.13660 7.89678 8.04734 9.19697 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016348 B = 0.002979 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.343671 B = 9397.835868 C =10385.366678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.322 6.322 3 C 0.066 3.934 4 C 0.047 3.953 5 N -0.467 5.467 6 C 0.107 3.893 7 C -0.163 4.163 8 C 0.558 3.442 9 O -0.563 6.563 10 N -0.700 5.700 11 C 0.148 3.852 12 H 0.048 0.952 13 C -0.112 4.112 14 C -0.109 4.109 15 C -0.128 4.128 16 C 0.172 3.828 17 H 0.058 0.942 18 N -0.750 5.750 19 C -0.213 4.213 20 H 0.066 0.934 21 C -0.060 4.060 22 N -0.983 5.983 23 Si 0.937 3.063 24 H -0.282 1.282 25 H -0.297 1.297 26 H -0.266 1.266 27 C -0.120 4.120 28 C -0.035 4.035 29 C -0.107 4.107 30 H 0.121 0.879 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.194 0.806 34 H 0.191 0.809 35 H 0.417 0.583 36 H 0.095 0.905 37 H 0.047 0.953 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.090 0.910 41 H 0.037 0.963 42 H 0.360 0.640 43 H 0.255 0.745 44 H 0.069 0.931 45 H 0.116 0.884 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.004 0.408 11.200 32.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.234 6.234 3 C 0.018 3.982 4 C -0.110 4.110 5 N -0.176 5.176 6 C -0.052 4.052 7 C -0.168 4.168 8 C 0.345 3.655 9 O -0.443 6.443 10 N -0.352 5.352 11 C 0.044 3.956 12 H 0.066 0.934 13 C -0.150 4.150 14 C -0.147 4.147 15 C -0.168 4.168 16 C 0.064 3.936 17 H 0.076 0.924 18 N -0.394 5.394 19 C -0.344 4.344 20 H 0.084 0.916 21 C -0.251 4.251 22 N -0.635 5.635 23 Si 0.766 3.234 24 H -0.208 1.208 25 H -0.224 1.224 26 H -0.192 1.192 27 C -0.158 4.158 28 C -0.044 4.044 29 C -0.163 4.163 30 H 0.139 0.861 31 H 0.092 0.908 32 H 0.090 0.910 33 H 0.211 0.789 34 H 0.208 0.792 35 H 0.255 0.745 36 H 0.113 0.887 37 H 0.065 0.935 38 H 0.088 0.912 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.056 0.944 42 H 0.193 0.807 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.134 0.866 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -30.776 0.366 11.203 32.753 hybrid contribution 0.509 -1.850 -0.476 1.977 sum -30.267 -1.484 10.727 32.146 Atomic orbital electron populations 1.23511 0.75513 1.06291 1.02940 1.86101 1.24034 1.25019 1.88281 1.19777 0.91713 0.87091 0.99582 1.23578 1.02139 0.86241 0.99030 1.67640 1.11866 1.26435 1.11657 1.23212 0.88538 0.98533 0.94897 1.20652 0.93693 0.94584 1.07888 1.18280 0.87399 0.83553 0.76296 1.90777 1.64086 1.38794 1.50612 1.45815 1.07642 1.08439 1.73282 1.20875 0.78997 0.98832 0.96921 0.93363 1.21782 0.95531 1.02306 0.95401 1.21331 0.95274 0.98187 0.99942 1.22047 1.00167 0.97736 0.96837 1.20490 0.91266 0.89794 0.92081 0.92399 1.42974 1.18950 1.10581 1.66918 1.19090 0.93699 0.96857 1.24750 0.91638 1.25269 0.97504 1.00740 1.01619 1.69847 1.18163 1.31181 1.44296 0.85684 0.77997 0.81417 0.78265 1.20839 1.22379 1.19184 1.22036 0.95588 0.97276 1.00889 1.20002 0.91956 0.95862 0.96617 1.20772 0.98881 0.93461 1.03211 0.86060 0.90818 0.90950 0.78890 0.79220 0.74471 0.88675 0.93450 0.91187 0.95112 0.89201 0.94416 0.80652 0.93575 0.91241 0.86602 0.90767 0.90608 0.90744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.07 9.82 113.37 1.11 1.18 16 2 O -0.32 -5.18 9.57 -92.65 -0.89 -6.07 16 3 C 0.07 1.24 6.68 22.56 0.15 1.39 16 4 C 0.05 0.72 10.21 84.83 0.87 1.58 16 5 N -0.47 -8.20 10.34 -194.39 -2.01 -10.21 16 6 C 0.11 1.82 10.69 85.03 0.91 2.73 16 7 C -0.16 -3.64 5.89 -20.01 -0.12 -3.76 16 8 C 0.56 15.02 7.69 86.79 0.67 15.68 16 9 O -0.56 -20.04 13.17 -3.87 -0.05 -20.09 16 10 N -0.70 -15.11 5.03 -445.40 -2.24 -17.35 16 11 C 0.15 4.09 2.28 44.99 0.10 4.19 16 12 H 0.05 1.81 5.93 -2.39 -0.01 1.79 16 13 C -0.11 -2.90 5.50 30.60 0.17 -2.74 16 14 C -0.11 -3.38 5.77 30.59 0.18 -3.20 16 15 C -0.13 -3.95 5.61 30.59 0.17 -3.78 16 16 C 0.17 5.88 3.10 45.01 0.14 6.02 16 17 H 0.06 2.04 8.08 -2.38 -0.02 2.02 16 18 N -0.75 -34.50 4.08 -322.87 -1.32 -35.82 16 19 C -0.21 -12.05 10.41 84.03 0.87 -11.17 16 20 H 0.07 3.99 8.06 -2.91 -0.02 3.97 16 21 C -0.06 -3.63 5.50 84.86 0.47 -3.16 16 22 N -0.98 -64.20 13.97 21.65 0.30 -63.89 16 23 Si 0.94 48.72 27.73 68.60 1.90 50.62 16 24 H -0.28 -14.37 7.11 99.48 0.71 -13.66 16 25 H -0.30 -15.62 7.11 99.48 0.71 -14.91 16 26 H -0.27 -13.34 6.52 99.48 0.65 -12.69 16 27 C -0.12 -2.98 5.08 30.61 0.16 -2.82 16 28 C -0.04 -0.83 5.97 -19.30 -0.12 -0.94 16 29 C -0.11 -2.71 8.69 71.24 0.62 -2.09 16 30 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.07 0.24 7.67 -2.39 -0.02 0.23 16 32 H 0.07 0.26 7.68 -2.39 -0.02 0.24 16 33 H 0.19 1.51 6.30 -2.91 -0.02 1.50 16 34 H 0.19 1.87 6.46 -2.91 -0.02 1.85 16 35 H 0.42 5.48 6.70 -92.71 -0.62 4.86 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 39 H 0.03 1.20 7.60 -2.39 -0.02 1.18 16 40 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.36 16.89 3.92 -92.71 -0.36 16.53 16 43 H 0.26 16.03 8.31 -92.71 -0.77 15.25 16 44 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 45 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.08 1.70 7.45 -2.39 -0.02 1.68 16 48 H 0.07 2.27 5.97 -2.38 -0.01 2.25 16 Total: -1.00 -79.32 376.93 2.00 -77.32 By element: Atomic # 1 Polarization: 26.43 SS G_CDS: -0.05 Total: 26.38 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: 6.35 Total: -0.89 kcal Atomic # 7 Polarization: -122.01 SS G_CDS: -5.27 Total: -127.27 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.94 Total: -26.16 kcal Atomic # 14 Polarization: 48.72 SS G_CDS: 1.90 Total: 50.62 kcal Total: -79.32 2.00 -77.32 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981172163.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.929 kcal (2) G-P(sol) polarization free energy of solvation -79.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds