Wall clock time and date at job start Tue Mar 31 2020 17:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35919 * 117.00275 * 2 1 4 4 C 1.38856 * 120.40431 * 359.97438 * 3 2 1 5 5 N 1.31885 * 120.99814 * 180.02562 * 4 3 2 6 6 C 1.31688 * 121.94061 * 359.70021 * 5 4 3 7 7 C 1.39521 * 120.68984 * 0.58920 * 6 5 4 8 8 C 1.47853 * 120.52980 * 179.69853 * 7 6 5 9 9 O 1.21552 * 120.00042 * 173.91238 * 8 7 6 10 10 N 1.34775 * 120.00086 * 353.91975 * 8 7 6 11 11 C 1.46501 * 120.00464 * 179.72281 * 10 8 7 12 12 H 1.09003 * 109.46586 * 325.27686 * 11 10 8 13 13 C 1.53008 * 109.47048 * 85.26749 * 11 10 8 14 14 C 1.52999 * 109.46932 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47131 * 300.00271 * 14 13 11 16 16 C 1.53005 * 109.47246 * 60.00364 * 15 14 13 17 17 H 1.09001 * 109.46832 * 59.99733 * 16 15 14 18 18 N 1.46495 * 109.47177 * 179.97438 * 16 15 14 19 19 C 1.36935 * 119.99973 * 275.00005 * 18 16 15 20 20 H 1.08000 * 120.00166 * 359.97438 * 19 18 16 21 21 C 1.38817 * 119.99766 * 179.97438 * 19 18 16 22 22 N 1.31621 * 120.00459 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99858 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47156 * 89.99884 * 23 21 19 25 25 H 1.48500 * 109.47269 * 210.00509 * 23 21 19 26 26 H 1.48500 * 109.47278 * 329.99917 * 23 21 19 27 27 C 1.52991 * 109.47545 * 205.27308 * 11 10 8 28 28 C 1.38844 * 120.40653 * 179.97438 * 3 2 1 29 29 C 1.50701 * 120.87919 * 0.02562 * 28 3 2 30 30 H 1.08998 * 109.46695 * 59.99611 * 1 2 3 31 31 H 1.09002 * 109.47280 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47015 * 299.99969 * 1 2 3 33 33 H 1.07998 * 119.49904 * 359.97438 * 4 3 2 34 34 H 1.07992 * 119.65112 * 180.28551 * 6 5 4 35 35 H 0.97007 * 120.00009 * 359.97438 * 10 8 7 36 36 H 1.08997 * 109.47221 * 300.00531 * 13 11 10 37 37 H 1.09001 * 109.46471 * 60.00479 * 13 11 10 38 38 H 1.09008 * 109.46836 * 60.00380 * 14 13 11 39 39 H 1.08998 * 109.46752 * 180.02562 * 14 13 11 40 40 H 1.09003 * 109.46570 * 179.97438 * 15 14 13 41 41 H 1.08995 * 109.47579 * 299.99762 * 15 14 13 42 42 H 0.97002 * 119.99924 * 94.99362 * 18 16 15 43 43 H 0.96989 * 120.00341 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.46782 * 300.00017 * 27 11 10 45 45 H 1.09003 * 109.46984 * 59.99663 * 27 11 10 46 46 H 1.09000 * 109.46898 * 263.63650 * 29 28 3 47 47 H 1.08999 * 109.47268 * 23.63573 * 29 28 3 48 48 H 1.09003 * 109.46910 * 143.63998 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2981 2.3809 -0.0005 5 7 1.8847 3.5621 -0.0010 6 6 3.1955 3.6891 0.0048 7 6 4.0200 2.5635 -0.0006 8 6 5.4912 2.7102 -0.0007 9 8 6.1999 1.7285 0.1063 10 7 6.0465 3.9325 -0.1193 11 6 7.5042 4.0786 -0.1133 12 1 7.9407 3.3391 0.5582 13 6 8.0441 3.8635 -1.5288 14 6 9.5666 4.0154 -1.5224 15 6 9.9369 5.4204 -1.0432 16 6 9.3970 5.6354 0.3722 17 1 9.8332 4.8958 1.0436 18 7 9.7522 6.9805 0.8312 19 6 10.9748 7.2078 1.4044 20 1 11.6772 6.3954 1.5184 21 6 11.3115 8.4826 1.8388 22 7 10.4554 9.4726 1.7003 23 14 12.9791 8.7925 2.6214 24 1 13.9590 9.1620 1.5685 25 1 12.8667 9.9003 3.6039 26 1 13.4374 7.5614 3.3140 27 6 7.8741 5.4837 0.3656 28 6 3.4321 1.2935 0.0005 29 6 4.2810 0.0483 0.0005 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 0.2197 2.3226 -0.0014 34 1 3.6368 4.6747 0.0088 35 1 5.4810 4.7160 -0.2050 36 1 7.7806 2.8624 -1.8699 37 1 7.6077 4.6029 -2.2003 38 1 10.0027 3.2757 -0.8508 39 1 9.9511 3.8626 -2.5308 40 1 11.0215 5.5284 -1.0383 41 1 9.5008 6.1600 -1.7147 42 1 9.1212 7.7102 0.7290 43 1 10.6905 10.3632 2.0042 44 1 7.4376 6.2231 -0.3060 45 1 7.4895 5.6369 1.3739 46 1 4.5794 -0.1880 1.0219 47 1 3.7079 -0.7822 -0.4119 48 1 5.1697 0.2144 -0.6084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981172164.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:25 Heat of formation + Delta-G solvation = -59.224827 kcal Electronic energy + Delta-G solvation = -28390.653854 eV Core-core repulsion = 24444.776511 eV Total energy + Delta-G solvation = -3945.877342 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.14746 -40.87741 -39.44235 -38.81617 -36.33722 -35.01351 -34.66591 -32.96291 -32.12083 -30.45371 -29.42133 -28.72369 -28.45839 -25.72452 -25.18319 -23.67657 -23.09661 -22.61017 -21.56275 -20.87427 -19.50971 -18.95692 -18.53359 -17.62617 -17.37971 -17.07357 -16.99860 -16.43912 -16.17077 -15.92577 -15.40654 -15.19293 -15.12660 -15.03119 -14.82091 -14.53953 -14.26509 -13.94629 -13.84386 -13.75278 -13.54968 -13.38316 -13.13111 -12.90414 -12.80184 -12.73273 -12.37229 -12.25615 -12.13560 -12.01841 -11.95777 -11.63529 -11.45283 -11.36778 -11.07795 -10.85988 -10.66764 -10.41865 -10.04453 -9.53563 -8.98056 -7.92631 -5.20091 -0.52094 0.08701 1.48142 1.48903 1.57245 1.73835 1.85083 2.30125 2.57692 2.67535 3.26508 3.40640 3.41374 3.61139 3.63508 3.65683 3.88533 3.98848 4.05947 4.10451 4.28902 4.33320 4.36383 4.40442 4.44703 4.54644 4.55559 4.60089 4.63905 4.69246 4.73141 4.77699 4.78949 5.02059 5.05153 5.11492 5.16855 5.19912 5.24831 5.36946 5.39201 5.48495 5.52411 5.55769 5.68060 6.13418 6.30238 6.45915 6.71919 7.11735 7.36565 8.12892 8.36237 9.30666 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023356 B = 0.002154 C = 0.002061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.535172 B =12998.337153 C =13582.159539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.067 3.933 4 C 0.045 3.955 5 N -0.471 5.471 6 C 0.102 3.898 7 C -0.163 4.163 8 C 0.564 3.436 9 O -0.555 6.555 10 N -0.705 5.705 11 C 0.160 3.840 12 H 0.074 0.926 13 C -0.116 4.116 14 C -0.106 4.106 15 C -0.127 4.127 16 C 0.177 3.823 17 H 0.037 0.963 18 N -0.735 5.735 19 C -0.235 4.235 20 H 0.072 0.928 21 C -0.076 4.076 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.272 1.272 27 C -0.116 4.116 28 C -0.032 4.032 29 C -0.106 4.106 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.070 0.930 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.412 0.588 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.040 0.960 41 H 0.053 0.947 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.077 0.923 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.446 -19.073 -7.178 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.112 4.112 5 N -0.180 5.180 6 C -0.057 4.057 7 C -0.169 4.169 8 C 0.351 3.649 9 O -0.435 6.435 10 N -0.356 5.356 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.068 3.932 17 H 0.055 0.945 18 N -0.375 5.375 19 C -0.367 4.367 20 H 0.090 0.910 21 C -0.268 4.268 22 N -0.619 5.619 23 Si 0.798 3.202 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.197 1.197 27 C -0.155 4.155 28 C -0.041 4.041 29 C -0.162 4.162 30 H 0.091 0.909 31 H 0.141 0.859 32 H 0.089 0.911 33 H 0.209 0.791 34 H 0.199 0.801 35 H 0.250 0.750 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.094 0.906 40 H 0.059 0.941 41 H 0.072 0.928 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.092 0.908 47 H 0.095 0.905 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -22.217 -19.270 -7.012 30.234 hybrid contribution 0.920 0.627 0.517 1.227 sum -21.297 -18.643 -6.495 29.040 Atomic orbital electron populations 1.23509 0.75586 1.06338 1.02852 1.86093 1.23947 1.24868 1.88269 1.19777 0.91892 0.86946 0.99511 1.23575 1.02133 0.86347 0.99191 1.67624 1.11982 1.26709 1.11733 1.23160 0.88690 0.98635 0.95205 1.20660 0.93973 0.94434 1.07799 1.18106 0.87160 0.83412 0.76178 1.90736 1.63808 1.38247 1.50694 1.45901 1.07886 1.08514 1.73320 1.20805 0.79045 0.96913 0.97675 0.90776 1.21819 0.95779 1.01983 0.95911 1.21408 0.95242 0.96152 1.01645 1.22104 1.00052 0.96681 0.97894 1.20320 0.92835 0.86445 0.93586 0.94511 1.42573 1.16575 1.06295 1.72058 1.19582 0.93464 0.93887 1.29802 0.90959 1.25494 1.01660 0.96000 1.03689 1.69796 1.36828 1.00587 1.54687 0.85216 0.80022 0.77256 0.77753 1.21542 1.22300 1.19670 1.21900 0.96226 0.95705 1.01676 1.20026 0.91829 0.95929 0.96310 1.20801 0.99047 0.93001 1.03356 0.90947 0.85869 0.91101 0.79092 0.80062 0.75039 0.91784 0.90760 0.92234 0.90645 0.94065 0.92807 0.79419 0.94119 0.90486 0.91914 0.90821 0.90511 0.89839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.72 9.57 -92.64 -0.89 -5.61 16 3 C 0.07 1.18 6.68 22.56 0.15 1.33 16 4 C 0.04 0.70 10.21 84.83 0.87 1.56 16 5 N -0.47 -8.98 10.34 -194.40 -2.01 -10.99 16 6 C 0.10 1.88 10.69 85.02 0.91 2.79 16 7 C -0.16 -3.52 5.89 -20.01 -0.12 -3.64 16 8 C 0.56 13.89 7.69 86.79 0.67 14.55 16 9 O -0.56 -16.86 13.16 -3.88 -0.05 -16.91 16 10 N -0.71 -15.19 5.03 -445.40 -2.24 -17.43 16 11 C 0.16 4.13 2.45 44.99 0.11 4.24 16 12 H 0.07 2.20 7.57 -2.39 -0.02 2.19 16 13 C -0.12 -2.81 5.50 30.60 0.17 -2.64 16 14 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 15 C -0.13 -4.31 5.50 30.60 0.17 -4.14 16 16 C 0.18 6.72 2.77 45.01 0.12 6.84 16 17 H 0.04 1.48 8.08 -2.39 -0.02 1.46 16 18 N -0.74 -36.16 5.12 -322.86 -1.65 -37.81 16 19 C -0.24 -12.97 9.93 84.04 0.83 -12.13 16 20 H 0.07 3.87 7.83 -2.91 -0.02 3.85 16 21 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 22 N -0.97 -58.73 13.06 21.65 0.28 -58.45 16 23 Si 0.97 46.27 29.55 68.60 2.03 48.29 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.30 -14.27 7.11 99.48 0.71 -13.56 16 26 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 27 C -0.12 -3.47 4.86 30.61 0.15 -3.32 16 28 C -0.03 -0.69 5.97 -19.30 -0.12 -0.80 16 29 C -0.11 -2.28 8.70 71.24 0.62 -1.66 16 30 H 0.07 0.21 7.67 -2.39 -0.02 0.20 16 31 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 32 H 0.07 0.23 7.68 -2.39 -0.02 0.22 16 33 H 0.19 1.63 6.30 -2.91 -0.02 1.61 16 34 H 0.18 2.40 6.46 -2.91 -0.02 2.38 16 35 H 0.41 6.69 6.70 -92.70 -0.62 6.07 16 36 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 38 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 39 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.37 19.56 7.80 -92.71 -0.72 18.84 16 43 H 0.25 14.76 8.31 -92.72 -0.77 13.99 16 44 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.08 1.43 7.44 -2.39 -0.02 1.41 16 48 H 0.08 2.06 5.95 -2.39 -0.01 2.05 16 Total: -1.00 -70.74 384.45 1.41 -69.33 By element: Atomic # 1 Polarization: 32.28 SS G_CDS: -0.35 Total: 31.93 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 6.30 Total: -2.34 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -5.62 Total: -124.68 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.94 Total: -22.52 kcal Atomic # 14 Polarization: 46.27 SS G_CDS: 2.03 Total: 48.29 kcal Total: -70.74 1.41 -69.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981172164.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.101 kcal (2) G-P(sol) polarization free energy of solvation -70.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.325 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds