Wall clock time and date at job start Tue Mar 31 2020 17:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35918 * 117.00075 * 2 1 4 4 C 1.38848 * 120.40462 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99710 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.94488 * 359.97438 * 5 4 3 7 7 C 1.39518 * 120.68989 * 359.97378 * 6 5 4 8 8 C 1.47858 * 120.53179 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99526 * 186.00897 * 8 7 6 10 10 N 1.34770 * 119.99737 * 6.00624 * 8 7 6 11 11 C 1.46502 * 119.99785 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47239 * 35.00055 * 11 10 8 13 13 C 1.52998 * 109.47275 * 274.99977 * 11 10 8 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47165 * 60.00399 * 14 13 11 16 16 C 1.52998 * 109.46709 * 299.99935 * 15 14 13 17 17 H 1.08992 * 109.47573 * 299.99790 * 16 15 14 18 18 N 1.46507 * 109.46791 * 179.97438 * 16 15 14 19 19 C 1.36934 * 119.99960 * 85.00385 * 18 16 15 20 20 H 1.08004 * 120.00015 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99913 * 180.02562 * 19 18 16 22 22 N 1.31610 * 120.00008 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99760 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47397 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47064 * 119.99916 * 23 21 19 26 26 H 1.48500 * 109.47470 * 239.99509 * 23 21 19 27 27 C 1.53001 * 109.47584 * 60.00197 * 16 15 14 28 28 C 1.38842 * 120.40271 * 179.72661 * 3 2 1 29 29 C 1.50697 * 120.88150 * 359.96172 * 28 3 2 30 30 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46453 * 60.00892 * 1 2 3 32 32 H 1.08992 * 109.47340 * 300.00534 * 1 2 3 33 33 H 1.07997 * 119.50367 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.65436 * 179.97438 * 6 5 4 35 35 H 0.97006 * 120.00449 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47530 * 300.00543 * 13 11 10 37 37 H 1.09003 * 109.47230 * 60.00101 * 13 11 10 38 38 H 1.09006 * 109.47112 * 180.02562 * 14 13 11 39 39 H 1.08991 * 109.47361 * 300.00140 * 14 13 11 40 40 H 1.09005 * 109.47299 * 59.99604 * 15 14 13 41 41 H 1.08994 * 109.47010 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00097 * 264.99783 * 18 16 15 43 43 H 0.97005 * 120.00122 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47380 * 179.97438 * 27 16 15 45 45 H 1.09006 * 109.46972 * 59.99356 * 27 16 15 46 46 H 1.09005 * 109.46651 * 96.53956 * 29 28 3 47 47 H 1.08995 * 109.47377 * 216.53684 * 29 28 3 48 48 H 1.08993 * 109.47288 * 336.54053 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3808 -0.0005 5 7 1.8847 3.5620 -0.0010 6 6 3.1954 3.6891 -0.0006 7 6 4.0199 2.5636 0.0010 8 6 5.4912 2.7103 0.0021 9 8 6.1998 1.7288 -0.1067 10 7 6.0464 3.9323 0.1237 11 6 7.5042 4.0777 0.1242 12 1 7.9430 3.3418 -0.5493 13 6 8.0384 3.8553 1.5405 14 6 9.5609 4.0065 1.5409 15 6 9.9337 5.4139 1.0706 16 6 9.3995 5.6364 -0.3458 17 1 9.8379 4.9001 -1.0193 18 7 9.7560 6.9842 -0.7960 19 6 10.9808 7.2150 -1.3630 20 1 11.6842 6.4036 -1.4780 21 6 11.3187 8.4922 -1.7891 22 7 10.4617 9.4811 -1.6485 23 14 12.9899 8.8072 -2.5620 24 1 13.7621 7.5395 -2.6057 25 1 12.8074 9.3228 -3.9427 26 1 13.7285 9.8097 -1.7530 27 6 7.8770 5.4851 -0.3463 28 6 3.4321 1.2934 0.0057 29 6 4.2809 0.0483 0.0129 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 0.2198 2.3226 -0.0005 34 1 3.6367 4.6748 -0.0014 35 1 5.4808 4.7156 0.2109 36 1 7.5996 4.5912 2.2142 37 1 7.7733 2.8525 1.8756 38 1 9.9416 3.8476 2.5499 39 1 9.9994 3.2703 0.8675 40 1 9.4952 6.1502 1.7441 41 1 11.0183 5.5218 1.0713 42 1 9.1243 7.7130 -0.6924 43 1 10.6977 10.3735 -1.9466 44 1 7.4964 5.6441 -1.3552 45 1 7.4385 6.2214 0.3274 46 1 4.5866 -0.1888 -1.0062 47 1 5.1652 0.2149 0.6280 48 1 3.7050 -0.7817 0.4219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981172165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:28 Heat of formation + Delta-G solvation = -37.527510 kcal Electronic energy + Delta-G solvation = -28390.372080 eV Core-core repulsion = 24445.435604 eV Total energy + Delta-G solvation = -3944.936476 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.37498 -39.92631 -38.49610 -37.82429 -34.91527 -33.90194 -33.46320 -31.34831 -31.08716 -29.28439 -28.13952 -28.02283 -27.62501 -24.44445 -23.70195 -22.81861 -21.93755 -21.44598 -20.48095 -19.56924 -18.54344 -17.79048 -17.15270 -16.70843 -16.60095 -16.42854 -15.97265 -15.24506 -14.89810 -14.60795 -14.41036 -14.07268 -13.95791 -13.70120 -13.54055 -13.31785 -13.13482 -13.03897 -12.98857 -12.66442 -12.51149 -12.18697 -12.15380 -12.04617 -11.90944 -11.00356 -10.95757 -10.89537 -10.73544 -10.39724 -10.34530 -10.23027 -10.14728 -9.87153 -9.83066 -9.67136 -9.47500 -9.02477 -8.87530 -8.86296 -6.96565 -5.77331 -3.05869 0.26328 0.83975 2.56539 2.64881 3.09775 3.43234 3.47134 3.49397 3.51223 3.94608 4.10614 4.36325 4.39458 4.57304 4.57833 4.63955 4.76773 4.86326 4.97995 5.01359 5.07590 5.24142 5.31028 5.41189 5.49443 5.58391 5.59201 5.67248 5.71889 5.82608 5.86800 5.88448 5.96113 6.00892 6.12888 6.17615 6.30113 6.32796 6.50164 6.52045 6.60390 6.70154 6.71975 6.96025 7.11834 7.38486 7.45638 7.71193 8.06574 8.41369 9.52718 10.09904 10.44570 11.45425 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002153 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.016917 B =13003.195296 C =13589.978306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.306 6.306 3 C 0.065 3.935 4 C 0.040 3.960 5 N -0.456 5.456 6 C 0.103 3.897 7 C -0.153 4.153 8 C 0.563 3.437 9 O -0.526 6.526 10 N -0.715 5.715 11 C 0.149 3.851 12 H 0.090 0.910 13 C -0.124 4.124 14 C -0.114 4.114 15 C -0.137 4.137 16 C 0.184 3.816 17 H 0.049 0.951 18 N -0.724 5.724 19 C -0.236 4.236 20 H 0.071 0.929 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.130 4.130 28 C -0.012 4.012 29 C -0.113 4.113 30 H 0.105 0.895 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.162 0.838 34 H 0.163 0.837 35 H 0.399 0.601 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.383 0.617 43 H 0.254 0.746 44 H 0.069 0.931 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -18.154 6.419 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.218 6.218 3 C 0.017 3.983 4 C -0.118 4.118 5 N -0.165 5.165 6 C -0.057 4.057 7 C -0.159 4.159 8 C 0.349 3.651 9 O -0.403 6.403 10 N -0.365 5.365 11 C 0.045 3.955 12 H 0.108 0.892 13 C -0.163 4.163 14 C -0.153 4.153 15 C -0.177 4.177 16 C 0.073 3.927 17 H 0.067 0.933 18 N -0.365 5.365 19 C -0.367 4.367 20 H 0.089 0.911 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.737 3.263 24 H -0.205 1.205 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.169 4.169 28 C -0.021 4.021 29 C -0.169 4.169 30 H 0.123 0.877 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.179 0.821 34 H 0.180 0.820 35 H 0.234 0.766 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.217 0.783 43 H 0.064 0.936 44 H 0.088 0.912 45 H 0.084 0.916 46 H 0.099 0.901 47 H 0.117 0.883 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -20.556 -18.320 6.238 28.233 hybrid contribution 0.520 0.454 -0.320 0.761 sum -20.036 -17.866 5.918 27.489 Atomic orbital electron populations 1.23160 0.77854 1.04588 1.01631 1.86101 1.21609 1.25488 1.88581 1.19770 0.92348 0.86086 1.00084 1.23086 1.00742 0.87081 1.00848 1.67540 1.11896 1.25954 1.11131 1.22886 0.88737 0.98199 0.95874 1.20788 0.94985 0.93776 1.06312 1.17886 0.86547 0.83747 0.76933 1.90748 1.63012 1.37292 1.49261 1.46098 1.08668 1.08116 1.73665 1.21090 0.77847 0.98869 0.97647 0.89155 1.21886 0.96715 1.01410 0.96250 1.21482 0.94350 0.98654 1.00815 1.22295 1.01665 0.94456 0.99333 1.20093 0.90235 0.89268 0.93085 0.93323 1.42407 1.17358 1.04385 1.72307 1.19290 0.92331 0.93852 1.31274 0.91078 1.24739 0.98255 0.95918 1.02154 1.69665 1.35022 1.00403 1.53087 0.86135 0.83779 0.77709 0.78694 1.20535 1.21918 1.21918 1.22108 0.99081 0.94100 1.01633 1.19860 0.90785 0.95974 0.95454 1.20915 0.99448 0.92451 1.04098 0.87701 0.92277 0.92315 0.82098 0.81974 0.76606 0.91988 0.92128 0.92488 0.92141 0.92642 0.91876 0.78324 0.93597 0.91191 0.91608 0.90087 0.88339 0.91473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 9.82 101.05 0.99 1.08 16 2 O -0.31 -2.55 9.57 -19.48 -0.19 -2.73 16 3 C 0.06 0.63 6.68 -39.13 -0.26 0.36 16 4 C 0.04 0.35 10.21 -17.31 -0.18 0.18 16 5 N -0.46 -4.81 10.34 -12.80 -0.13 -4.95 16 6 C 0.10 1.03 10.69 -17.14 -0.18 0.84 16 7 C -0.15 -1.72 5.89 -104.84 -0.62 -2.33 16 8 C 0.56 7.10 7.69 -12.33 -0.09 7.00 16 9 O -0.53 -7.96 13.18 5.32 0.07 -7.89 16 10 N -0.72 -8.14 5.03 -54.75 -0.28 -8.42 16 11 C 0.15 2.00 2.45 -67.93 -0.17 1.83 16 12 H 0.09 1.36 7.58 -51.93 -0.39 0.96 16 13 C -0.12 -1.61 5.49 -26.73 -0.15 -1.76 16 14 C -0.11 -1.59 5.92 -26.73 -0.16 -1.75 16 15 C -0.14 -2.36 5.50 -26.73 -0.15 -2.50 16 16 C 0.18 3.48 2.77 -67.93 -0.19 3.29 16 17 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 18 N -0.72 -17.59 5.12 -53.42 -0.27 -17.86 16 19 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 20 H 0.07 1.90 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -27.88 13.06 55.49 0.72 -27.15 16 23 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 27 C -0.13 -1.99 4.86 -26.73 -0.13 -2.12 16 28 C -0.01 -0.13 5.97 -103.76 -0.62 -0.75 16 29 C -0.11 -1.21 8.68 36.00 0.31 -0.90 16 30 H 0.10 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.19 7.67 -51.93 -0.40 -0.21 16 32 H 0.06 0.18 7.67 -51.93 -0.40 -0.22 16 33 H 0.16 0.95 6.30 -52.49 -0.33 0.62 16 34 H 0.16 1.24 6.46 -52.49 -0.34 0.90 16 35 H 0.40 3.60 6.70 -40.82 -0.27 3.33 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 42 H 0.38 9.86 7.80 -40.82 -0.32 9.55 16 43 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 44 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 45 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 46 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.10 1.19 5.99 -51.93 -0.31 0.88 16 48 H 0.07 0.63 7.44 -51.93 -0.39 0.25 16 LS Contribution 384.48 15.07 5.79 5.79 Total: -1.00 -32.67 384.48 -8.48 -41.15 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: -7.34 Total: 9.41 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -1.83 Total: -4.63 kcal Atomic # 7 Polarization: -58.42 SS G_CDS: 0.04 Total: -58.38 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -0.12 Total: -10.62 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.67 -8.48 -41.15 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981172165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.623 kcal (2) G-P(sol) polarization free energy of solvation -32.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds