Wall clock time and date at job start Tue Mar 31 2020 17:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35918 * 117.00075 * 2 1 4 4 C 1.38848 * 120.40462 * 359.97438 * 3 2 1 5 5 N 1.31879 * 120.99710 * 180.02562 * 4 3 2 6 6 C 1.31683 * 121.94488 * 359.97438 * 5 4 3 7 7 C 1.39518 * 120.68989 * 359.97378 * 6 5 4 8 8 C 1.47858 * 120.53179 * 180.02562 * 7 6 5 9 9 O 1.21549 * 119.99526 * 186.00897 * 8 7 6 10 10 N 1.34770 * 119.99737 * 6.00624 * 8 7 6 11 11 C 1.46502 * 119.99785 * 180.02562 * 10 8 7 12 12 H 1.08991 * 109.47239 * 35.00055 * 11 10 8 13 13 C 1.52998 * 109.47275 * 274.99977 * 11 10 8 14 14 C 1.52997 * 109.47254 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47165 * 60.00399 * 14 13 11 16 16 C 1.52998 * 109.46709 * 299.99935 * 15 14 13 17 17 H 1.08992 * 109.47573 * 299.99790 * 16 15 14 18 18 N 1.46507 * 109.46791 * 179.97438 * 16 15 14 19 19 C 1.36934 * 119.99960 * 85.00385 * 18 16 15 20 20 H 1.08004 * 120.00015 * 359.97438 * 19 18 16 21 21 C 1.38812 * 119.99913 * 180.02562 * 19 18 16 22 22 N 1.31610 * 120.00008 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99760 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47397 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47064 * 119.99916 * 23 21 19 26 26 H 1.48500 * 109.47470 * 239.99509 * 23 21 19 27 27 C 1.53001 * 109.47584 * 60.00197 * 16 15 14 28 28 C 1.38842 * 120.40271 * 179.72661 * 3 2 1 29 29 C 1.50697 * 120.88150 * 359.96172 * 28 3 2 30 30 H 1.09001 * 109.47110 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46453 * 60.00892 * 1 2 3 32 32 H 1.08992 * 109.47340 * 300.00534 * 1 2 3 33 33 H 1.07997 * 119.50367 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.65436 * 179.97438 * 6 5 4 35 35 H 0.97006 * 120.00449 * 0.02562 * 10 8 7 36 36 H 1.09000 * 109.47530 * 300.00543 * 13 11 10 37 37 H 1.09003 * 109.47230 * 60.00101 * 13 11 10 38 38 H 1.09006 * 109.47112 * 180.02562 * 14 13 11 39 39 H 1.08991 * 109.47361 * 300.00140 * 14 13 11 40 40 H 1.09005 * 109.47299 * 59.99604 * 15 14 13 41 41 H 1.08994 * 109.47010 * 179.97438 * 15 14 13 42 42 H 0.96999 * 120.00097 * 264.99783 * 18 16 15 43 43 H 0.97005 * 120.00122 * 180.02562 * 22 21 19 44 44 H 1.08997 * 109.47380 * 179.97438 * 27 16 15 45 45 H 1.09006 * 109.46972 * 59.99356 * 27 16 15 46 46 H 1.09005 * 109.46651 * 96.53956 * 29 28 3 47 47 H 1.08995 * 109.47377 * 216.53684 * 29 28 3 48 48 H 1.08993 * 109.47288 * 336.54053 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2110 0.0000 4 6 1.2982 2.3808 -0.0005 5 7 1.8847 3.5620 -0.0010 6 6 3.1954 3.6891 -0.0006 7 6 4.0199 2.5636 0.0010 8 6 5.4912 2.7103 0.0021 9 8 6.1998 1.7288 -0.1067 10 7 6.0464 3.9323 0.1237 11 6 7.5042 4.0777 0.1242 12 1 7.9430 3.3418 -0.5493 13 6 8.0384 3.8553 1.5405 14 6 9.5609 4.0065 1.5409 15 6 9.9337 5.4139 1.0706 16 6 9.3995 5.6364 -0.3458 17 1 9.8379 4.9001 -1.0193 18 7 9.7560 6.9842 -0.7960 19 6 10.9808 7.2150 -1.3630 20 1 11.6842 6.4036 -1.4780 21 6 11.3187 8.4922 -1.7891 22 7 10.4617 9.4811 -1.6485 23 14 12.9899 8.8072 -2.5620 24 1 13.7621 7.5395 -2.6057 25 1 12.8074 9.3228 -3.9427 26 1 13.7285 9.8097 -1.7530 27 6 7.8770 5.4851 -0.3463 28 6 3.4321 1.2934 0.0057 29 6 4.2809 0.0483 0.0129 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5137 -0.8901 32 1 -0.3633 0.5139 0.8899 33 1 0.2198 2.3226 -0.0005 34 1 3.6367 4.6748 -0.0014 35 1 5.4808 4.7156 0.2109 36 1 7.5996 4.5912 2.2142 37 1 7.7733 2.8525 1.8756 38 1 9.9416 3.8476 2.5499 39 1 9.9994 3.2703 0.8675 40 1 9.4952 6.1502 1.7441 41 1 11.0183 5.5218 1.0713 42 1 9.1243 7.7130 -0.6924 43 1 10.6977 10.3735 -1.9466 44 1 7.4964 5.6441 -1.3552 45 1 7.4385 6.2214 0.3274 46 1 4.5866 -0.1888 -1.0062 47 1 5.1652 0.2149 0.6280 48 1 3.7050 -0.7817 0.4219 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981172165.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:57:28 Heat of formation + Delta-G solvation = -59.429171 kcal Electronic energy + Delta-G solvation = -28391.321807 eV Core-core repulsion = 24445.435604 eV Total energy + Delta-G solvation = -3945.886203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.14790 -40.87837 -39.44337 -38.81659 -36.33826 -35.01447 -34.66772 -32.96524 -32.12092 -30.45463 -29.42305 -28.72504 -28.45863 -25.72754 -25.18377 -23.67680 -23.09779 -22.61122 -21.56165 -20.87535 -19.51034 -18.95789 -18.53407 -17.62772 -17.37809 -17.07423 -16.99954 -16.43963 -16.17161 -15.92617 -15.40802 -15.19220 -15.12509 -15.03394 -14.82238 -14.53726 -14.26658 -13.94737 -13.84542 -13.75290 -13.55193 -13.38358 -13.12765 -12.90082 -12.83897 -12.73346 -12.37263 -12.23735 -12.11475 -12.00764 -11.95981 -11.64126 -11.45529 -11.36932 -11.08034 -10.87087 -10.66628 -10.42135 -10.04474 -9.53604 -8.98205 -7.92980 -5.20350 -0.52055 0.08709 1.47815 1.48236 1.57992 1.73866 1.85142 2.30118 2.57453 2.67542 3.26518 3.40570 3.41375 3.61067 3.63503 3.65546 3.88489 3.98855 4.05936 4.10450 4.28815 4.33321 4.36387 4.40495 4.44614 4.54599 4.55564 4.60116 4.63911 4.69259 4.73097 4.77739 4.78953 5.02086 5.05142 5.11504 5.16740 5.19881 5.24855 5.36936 5.39147 5.48239 5.52496 5.55822 5.68058 6.13392 6.30080 6.45962 6.71973 7.11714 7.36409 8.12665 8.36006 9.30543 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.023445 B = 0.002153 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.016917 B =13003.195296 C =13589.978306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.319 6.319 3 C 0.067 3.933 4 C 0.045 3.955 5 N -0.471 5.471 6 C 0.102 3.898 7 C -0.163 4.163 8 C 0.564 3.436 9 O -0.555 6.555 10 N -0.705 5.705 11 C 0.161 3.839 12 H 0.074 0.926 13 C -0.117 4.117 14 C -0.106 4.106 15 C -0.127 4.127 16 C 0.177 3.823 17 H 0.037 0.963 18 N -0.736 5.736 19 C -0.234 4.234 20 H 0.073 0.927 21 C -0.077 4.077 22 N -0.968 5.968 23 Si 0.968 3.032 24 H -0.268 1.268 25 H -0.295 1.295 26 H -0.294 1.294 27 C -0.116 4.116 28 C -0.032 4.032 29 C -0.105 4.105 30 H 0.123 0.877 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.192 0.808 34 H 0.183 0.817 35 H 0.412 0.588 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.041 0.959 42 H 0.374 0.626 43 H 0.250 0.750 44 H 0.062 0.938 45 H 0.076 0.924 46 H 0.073 0.927 47 H 0.082 0.918 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.468 -19.154 7.109 30.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 O -0.232 6.232 3 C 0.019 3.981 4 C -0.112 4.112 5 N -0.181 5.181 6 C -0.057 4.057 7 C -0.169 4.169 8 C 0.351 3.649 9 O -0.435 6.435 10 N -0.356 5.356 11 C 0.056 3.944 12 H 0.092 0.908 13 C -0.155 4.155 14 C -0.144 4.144 15 C -0.167 4.167 16 C 0.068 3.932 17 H 0.055 0.945 18 N -0.375 5.375 19 C -0.366 4.366 20 H 0.091 0.909 21 C -0.269 4.269 22 N -0.619 5.619 23 Si 0.797 3.203 24 H -0.192 1.192 25 H -0.222 1.222 26 H -0.222 1.222 27 C -0.155 4.155 28 C -0.041 4.041 29 C -0.161 4.161 30 H 0.141 0.859 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.209 0.791 34 H 0.199 0.801 35 H 0.250 0.750 36 H 0.092 0.908 37 H 0.082 0.918 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.206 0.794 43 H 0.059 0.941 44 H 0.081 0.919 45 H 0.095 0.905 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -22.231 -19.358 6.946 30.285 hybrid contribution 0.911 0.644 -0.523 1.233 sum -21.320 -18.714 6.423 29.086 Atomic orbital electron populations 1.23508 0.75584 1.06339 1.02853 1.86095 1.23948 1.24866 1.88269 1.19774 0.91891 0.86948 0.99507 1.23571 1.02133 0.86347 0.99193 1.67618 1.11987 1.26715 1.11730 1.23160 0.88688 0.98637 0.95210 1.20665 0.93976 0.94435 1.07789 1.18103 0.87158 0.83406 0.76190 1.90739 1.63809 1.38261 1.50677 1.45898 1.07881 1.08546 1.73299 1.20802 0.79052 0.96893 0.97685 0.90778 1.21818 0.95805 1.01970 0.95908 1.21406 0.95231 0.96135 1.01677 1.22101 1.00058 0.96655 0.97905 1.20311 0.92842 0.86388 0.93646 0.94496 1.42583 1.16351 1.06119 1.72454 1.19621 0.93288 0.93779 1.29935 0.90933 1.25490 1.01659 0.95994 1.03725 1.69803 1.36760 1.00506 1.54846 0.85151 0.80059 0.77703 0.77351 1.19243 1.22207 1.22151 1.21893 0.96225 0.95678 1.01713 1.20025 0.91830 0.95926 0.96321 1.20787 0.98982 0.93006 1.03351 0.85870 0.91093 0.90951 0.79092 0.80062 0.75038 0.90758 0.91788 0.90643 0.92243 0.92805 0.94059 0.79417 0.94125 0.91907 0.90496 0.90827 0.89909 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.06 9.82 113.37 1.11 1.17 16 2 O -0.32 -4.72 9.57 -92.63 -0.89 -5.60 16 3 C 0.07 1.18 6.68 22.56 0.15 1.33 16 4 C 0.04 0.70 10.21 84.83 0.87 1.56 16 5 N -0.47 -8.98 10.34 -194.41 -2.01 -10.99 16 6 C 0.10 1.88 10.69 85.02 0.91 2.79 16 7 C -0.16 -3.52 5.89 -20.00 -0.12 -3.63 16 8 C 0.56 13.88 7.69 86.79 0.67 14.55 16 9 O -0.56 -16.86 13.18 -3.87 -0.05 -16.91 16 10 N -0.71 -15.18 5.03 -445.41 -2.24 -17.42 16 11 C 0.16 4.13 2.45 44.99 0.11 4.24 16 12 H 0.07 2.20 7.58 -2.39 -0.02 2.18 16 13 C -0.12 -2.81 5.49 30.59 0.17 -2.64 16 14 C -0.11 -2.79 5.92 30.59 0.18 -2.61 16 15 C -0.13 -4.30 5.50 30.59 0.17 -4.13 16 16 C 0.18 6.71 2.77 44.99 0.12 6.84 16 17 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 18 N -0.74 -36.14 5.12 -322.94 -1.65 -37.79 16 19 C -0.23 -12.90 9.93 84.03 0.83 -12.07 16 20 H 0.07 3.89 7.83 -2.91 -0.02 3.87 16 21 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 22 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 23 Si 0.97 46.28 29.55 68.60 2.03 48.31 16 24 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 C -0.12 -3.46 4.86 30.60 0.15 -3.32 16 28 C -0.03 -0.69 5.97 -19.30 -0.12 -0.80 16 29 C -0.11 -2.26 8.68 71.23 0.62 -1.64 16 30 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.07 0.23 7.67 -2.39 -0.02 0.22 16 32 H 0.07 0.21 7.67 -2.39 -0.02 0.19 16 33 H 0.19 1.63 6.30 -2.91 -0.02 1.61 16 34 H 0.18 2.40 6.46 -2.91 -0.02 2.38 16 35 H 0.41 6.69 6.70 -92.70 -0.62 6.07 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 41 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 42 H 0.37 19.55 7.80 -92.71 -0.72 18.83 16 43 H 0.25 14.73 8.31 -92.70 -0.77 13.96 16 44 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.08 2.14 8.14 -2.38 -0.02 2.12 16 46 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 47 H 0.08 2.04 5.99 -2.39 -0.01 2.03 16 48 H 0.08 1.43 7.44 -2.39 -0.02 1.41 16 Total: -1.00 -70.79 384.48 1.41 -69.38 By element: Atomic # 1 Polarization: 32.11 SS G_CDS: -0.35 Total: 31.76 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 6.29 Total: -2.28 kcal Atomic # 7 Polarization: -119.04 SS G_CDS: -5.62 Total: -124.66 kcal Atomic # 8 Polarization: -21.58 SS G_CDS: -0.94 Total: -22.52 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -70.79 1.41 -69.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981172165.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.955 kcal (2) G-P(sol) polarization free energy of solvation -70.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds