Wall clock time and date at job start Tue Mar 31 2020 17:46:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38363 * 119.40915 * 2 1 4 4 C 1.38335 * 119.45762 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.81942 * 180.02562 * 4 3 2 6 6 C 1.39980 * 118.35272 * 0.02562 * 4 3 2 7 7 C 1.47519 * 120.59691 * 180.02562 * 6 4 3 8 8 O 1.21591 * 120.00408 * 89.99896 * 7 6 4 9 9 N 1.34779 * 120.00085 * 269.99697 * 7 6 4 10 10 C 1.46500 * 120.00442 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 34.99879 * 10 9 7 12 12 C 1.52996 * 109.47249 * 275.00281 * 10 9 7 13 13 C 1.53002 * 109.46972 * 299.99946 * 12 10 9 14 14 C 1.52997 * 109.46817 * 299.99733 * 13 12 10 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 12 16 16 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 17 17 N 1.46504 * 109.46883 * 180.02562 * 15 14 13 18 18 C 1.36936 * 119.99747 * 274.99621 * 17 15 14 19 19 H 1.08001 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.38806 * 119.99929 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00250 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00003 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46881 * 90.00523 * 22 20 18 24 24 H 1.48505 * 109.47143 * 210.00141 * 22 20 18 25 25 H 1.48496 * 109.47372 * 330.00646 * 22 20 18 26 26 C 1.52997 * 109.47473 * 154.99976 * 10 9 7 27 27 C 1.40282 * 118.80545 * 0.26969 * 6 4 3 28 28 O 1.35426 * 119.80092 * 179.72738 * 27 6 4 29 29 N 1.31882 * 119.41048 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47381 * 89.99654 * 1 2 3 31 31 H 1.08995 * 109.47258 * 209.99927 * 1 2 3 32 32 H 1.09000 * 109.47139 * 329.99348 * 1 2 3 33 33 H 1.08001 * 120.26926 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47378 * 269.97635 * 5 4 3 35 35 H 1.08999 * 109.47495 * 29.97570 * 5 4 3 36 36 H 1.08999 * 109.47322 * 149.98154 * 5 4 3 37 37 H 0.96997 * 119.99462 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47452 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47054 * 59.99646 * 12 10 9 40 40 H 1.09002 * 109.47070 * 179.97438 * 13 12 10 41 41 H 1.08996 * 109.47407 * 59.99513 * 13 12 10 42 42 H 1.09001 * 109.47502 * 300.00518 * 14 13 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 44 44 H 0.97003 * 120.00173 * 95.00359 * 17 15 14 45 45 H 0.97006 * 120.00552 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47153 * 300.00243 * 26 10 9 47 47 H 1.08993 * 109.47194 * 180.02562 * 26 10 9 48 48 H 0.96695 * 114.00057 * 90.00259 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3407 2.5013 0.0000 6 6 4.2356 -0.0248 -0.0016 7 6 5.7097 -0.0813 -0.0017 8 8 6.3172 -0.1055 1.0513 9 7 6.3831 -0.1062 -1.1689 10 6 7.8470 -0.1629 -1.1690 11 1 8.1872 -0.7668 -0.3278 12 6 8.4122 1.2531 -1.0418 13 6 7.9346 2.1009 -2.2225 14 6 8.4206 1.4734 -3.5305 15 6 7.8553 0.0573 -3.6577 16 1 6.7662 0.0995 -3.6577 17 7 8.3213 -0.5438 -4.9099 18 6 7.6426 -0.3094 -6.0759 19 1 6.7636 0.3182 -6.0724 20 6 8.0837 -0.8793 -7.2623 21 7 7.4311 -0.6545 -8.3830 22 14 9.6035 -1.9653 -7.2683 23 1 9.2050 -3.3757 -7.0286 24 1 10.2823 -1.8597 -8.5849 25 1 10.5314 -1.5242 -6.1961 26 6 8.3330 -0.7904 -2.4770 27 6 3.4758 -1.2041 -0.0079 28 8 4.0991 -2.4063 -0.0146 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6411 2.1376 -0.0004 34 1 4.5266 2.8140 -1.0275 35 1 3.7620 3.2687 0.5142 36 1 5.2914 2.3580 0.5137 37 1 5.8984 -0.0873 -2.0089 38 1 9.5014 1.2109 -1.0414 39 1 8.0660 1.7002 -0.1099 40 1 8.3369 3.1099 -2.1316 41 1 6.8454 2.1431 -2.2225 42 1 9.5098 1.4311 -3.5305 43 1 8.0807 2.0776 -4.3717 44 1 9.1104 -1.1078 -4.9130 45 1 7.7396 -1.0524 -9.2121 46 1 7.9303 -1.7992 -2.5677 47 1 9.4221 -0.8330 -2.4769 48 1 4.2804 -2.7603 0.8667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981257422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:21 Heat of formation + Delta-G solvation = -44.521864 kcal Electronic energy + Delta-G solvation = -29541.142865 eV Core-core repulsion = 25595.903091 eV Total energy + Delta-G solvation = -3945.239774 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.20709 -39.79670 -37.97255 -37.56376 -34.63207 -34.47651 -33.07177 -32.03252 -31.38389 -29.96014 -28.65600 -28.17850 -27.72483 -23.89976 -23.44834 -22.45937 -21.98880 -21.06477 -20.83823 -19.03168 -18.65459 -18.04381 -17.60288 -17.40271 -16.03821 -15.70089 -15.39528 -14.98025 -14.68399 -14.50874 -14.40494 -13.92027 -13.78940 -13.66780 -13.58640 -13.28980 -13.19960 -12.84526 -12.69676 -12.64474 -12.31060 -12.26589 -12.13316 -11.99995 -11.87332 -11.86203 -11.29497 -10.99389 -10.95455 -10.49533 -10.35117 -10.29285 -10.10721 -9.82417 -9.74805 -9.60253 -9.58053 -9.07071 -9.02230 -8.90941 -7.30198 -5.79616 -3.15503 0.52303 0.83203 2.45037 3.04006 3.12187 3.35950 3.38868 3.44066 3.46908 4.18377 4.23579 4.53177 4.56929 4.70494 4.84169 4.90704 4.98444 5.01018 5.05010 5.10268 5.25366 5.27011 5.31344 5.40146 5.43719 5.53190 5.56984 5.58301 5.66380 5.72551 5.74769 5.82058 5.85581 5.92710 5.98056 6.09989 6.17645 6.17667 6.34850 6.38449 6.53306 6.59394 6.81560 6.95933 7.19503 7.46811 7.60918 7.95549 8.11476 8.39239 9.17546 9.90262 10.09689 11.38629 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003327 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.993422 B = 8412.828428 C = 9201.262680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.187 4.187 4 C 0.013 3.987 5 C -0.126 4.126 6 C -0.203 4.203 7 C 0.579 3.421 8 O -0.540 6.540 9 N -0.703 5.703 10 C 0.151 3.849 11 H 0.086 0.914 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.137 4.137 15 C 0.185 3.815 16 H 0.049 0.951 17 N -0.748 5.748 18 C -0.244 4.244 19 H 0.089 0.911 20 C 0.005 3.995 21 N -0.934 5.934 22 Si 0.884 3.116 23 H -0.284 1.284 24 H -0.292 1.292 25 H -0.277 1.277 26 C -0.138 4.138 27 C 0.357 3.643 28 O -0.473 6.473 29 N -0.506 5.506 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.145 0.855 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.406 0.594 38 H 0.071 0.929 39 H 0.061 0.939 40 H 0.055 0.945 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.072 0.928 47 H 0.076 0.924 48 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.948 5.408 21.244 23.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.031 3.969 3 C -0.207 4.207 4 C 0.005 3.995 5 C -0.183 4.183 6 C -0.210 4.210 7 C 0.363 3.637 8 O -0.418 6.418 9 N -0.354 5.354 10 C 0.047 3.953 11 H 0.104 0.896 12 C -0.166 4.166 13 C -0.154 4.154 14 C -0.177 4.177 15 C 0.075 3.925 16 H 0.067 0.933 17 N -0.390 5.390 18 C -0.374 4.374 19 H 0.107 0.893 20 C -0.190 4.190 21 N -0.581 5.581 22 Si 0.715 3.285 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.177 4.177 27 C 0.177 3.823 28 O -0.281 6.281 29 N -0.226 5.226 30 H 0.103 0.897 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.242 0.758 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.074 0.926 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.194 0.806 45 H 0.069 0.931 46 H 0.090 0.910 47 H 0.095 0.905 48 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -9.089 4.687 21.184 23.523 hybrid contribution 1.396 -0.213 -0.223 1.430 sum -7.693 4.475 20.961 22.772 Atomic orbital electron populations 1.20806 0.88121 1.03803 1.03717 1.21187 0.97015 0.87064 0.91662 1.21785 0.93644 0.99649 1.05650 1.20257 0.93685 0.94179 0.91352 1.20970 1.00391 0.93030 1.03859 1.20894 0.95097 0.94132 1.10876 1.17734 0.85872 0.75795 0.84296 1.90792 1.69346 1.50400 1.31268 1.46208 1.07728 1.73041 1.08393 1.20981 0.78645 0.96876 0.98806 0.89583 1.21911 1.00809 0.95250 0.98653 1.21506 1.00541 0.98285 0.95020 1.22250 1.00668 0.98817 0.95979 1.20117 0.96818 0.90542 0.84985 0.93283 1.42775 1.32768 1.59182 1.04287 1.19044 1.08128 1.25851 0.84357 0.89283 1.24666 0.98661 1.00333 0.95389 1.69699 1.41305 1.48618 0.98491 0.86557 0.83970 0.81224 0.76796 1.21082 1.21795 1.20312 1.22173 1.01745 1.00112 0.93637 1.19004 0.86364 0.84469 0.92480 1.84731 1.76618 1.32583 1.34165 1.67050 1.09133 1.30443 1.16019 0.89705 0.90136 0.90225 0.83770 0.89395 0.90155 0.90427 0.75775 0.91023 0.91983 0.92597 0.92534 0.92603 0.91574 0.80614 0.93052 0.90974 0.90523 0.73611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.71 10.16 36.00 0.37 -0.34 16 2 C 0.17 1.70 6.78 -82.53 -0.56 1.14 16 3 C -0.19 -1.68 9.41 -39.50 -0.37 -2.05 16 4 C 0.01 0.14 5.95 -103.93 -0.62 -0.48 16 5 C -0.13 -1.07 9.69 36.01 0.35 -0.72 16 6 C -0.20 -2.57 5.66 -104.69 -0.59 -3.16 16 7 C 0.58 7.93 5.39 -12.48 -0.07 7.86 16 8 O -0.54 -8.70 16.77 5.29 0.09 -8.61 16 9 N -0.70 -9.24 4.23 -54.86 -0.23 -9.47 16 10 C 0.15 1.99 2.78 -67.93 -0.19 1.80 16 11 H 0.09 1.16 7.58 -51.93 -0.39 0.77 16 12 C -0.13 -1.56 5.60 -26.73 -0.15 -1.71 16 13 C -0.12 -1.48 5.77 -26.73 -0.15 -1.63 16 14 C -0.14 -2.22 5.50 -26.73 -0.15 -2.36 16 15 C 0.19 3.29 2.60 -67.93 -0.18 3.11 16 16 H 0.05 0.90 6.44 -51.93 -0.33 0.57 16 17 N -0.75 -16.99 4.92 -53.42 -0.26 -17.26 16 18 C -0.24 -6.70 10.41 -15.06 -0.16 -6.85 16 19 H 0.09 2.62 8.06 -52.49 -0.42 2.20 16 20 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -29.04 13.97 55.49 0.78 -28.26 16 22 Si 0.88 21.91 27.73 -169.99 -4.71 17.20 16 23 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 25 H -0.28 -6.43 6.52 56.52 0.37 -6.07 16 26 C -0.14 -2.03 5.07 -26.73 -0.14 -2.17 16 27 C 0.36 4.69 7.77 -16.61 -0.13 4.56 16 28 O -0.47 -5.94 13.01 -17.97 -0.23 -6.17 16 29 N -0.51 -6.46 10.28 -9.21 -0.09 -6.56 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.08 0.77 7.19 -51.93 -0.37 0.40 16 37 H 0.41 5.47 6.85 -40.82 -0.28 5.19 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.71 7.60 -51.93 -0.39 0.31 16 42 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.36 8.13 5.66 -40.82 -0.23 7.90 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.40 3.30 9.06 45.56 0.41 3.71 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -34.63 388.09 -8.33 -42.96 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.68 Total: 13.26 kcal Atomic # 6 Polarization: -0.12 SS G_CDS: -2.83 Total: -2.95 kcal Atomic # 7 Polarization: -61.73 SS G_CDS: 0.19 Total: -61.55 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: -0.15 Total: -14.78 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.71 Total: 17.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.63 -8.33 -42.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981257422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.558 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds