Wall clock time and date at job start Tue Mar 31 2020 17:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38363 * 119.40915 * 2 1 4 4 C 1.38335 * 119.45762 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.81942 * 180.02562 * 4 3 2 6 6 C 1.39980 * 118.35272 * 0.02562 * 4 3 2 7 7 C 1.47519 * 120.59691 * 180.02562 * 6 4 3 8 8 O 1.21591 * 120.00408 * 89.99896 * 7 6 4 9 9 N 1.34779 * 120.00085 * 269.99697 * 7 6 4 10 10 C 1.46500 * 120.00442 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 34.99879 * 10 9 7 12 12 C 1.52996 * 109.47249 * 275.00281 * 10 9 7 13 13 C 1.53002 * 109.46972 * 299.99946 * 12 10 9 14 14 C 1.52997 * 109.46817 * 299.99733 * 13 12 10 15 15 C 1.53006 * 109.47127 * 60.00361 * 14 13 12 16 16 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 17 17 N 1.46504 * 109.46883 * 180.02562 * 15 14 13 18 18 C 1.36936 * 119.99747 * 274.99621 * 17 15 14 19 19 H 1.08001 * 119.99986 * 359.97438 * 18 17 15 20 20 C 1.38806 * 119.99929 * 180.02562 * 18 17 15 21 21 N 1.31618 * 120.00250 * 179.97438 * 20 18 17 22 22 Si 1.86801 * 120.00003 * 359.97438 * 20 18 17 23 23 H 1.48507 * 109.46881 * 90.00523 * 22 20 18 24 24 H 1.48505 * 109.47143 * 210.00141 * 22 20 18 25 25 H 1.48496 * 109.47372 * 330.00646 * 22 20 18 26 26 C 1.52997 * 109.47473 * 154.99976 * 10 9 7 27 27 C 1.40282 * 118.80545 * 0.26969 * 6 4 3 28 28 O 1.35426 * 119.80092 * 179.72738 * 27 6 4 29 29 N 1.31882 * 119.41048 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47381 * 89.99654 * 1 2 3 31 31 H 1.08995 * 109.47258 * 209.99927 * 1 2 3 32 32 H 1.09000 * 109.47139 * 329.99348 * 1 2 3 33 33 H 1.08001 * 120.26926 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47378 * 269.97635 * 5 4 3 35 35 H 1.08999 * 109.47495 * 29.97570 * 5 4 3 36 36 H 1.08999 * 109.47322 * 149.98154 * 5 4 3 37 37 H 0.96997 * 119.99462 * 359.97438 * 9 7 6 38 38 H 1.08996 * 109.47452 * 179.97438 * 12 10 9 39 39 H 1.09000 * 109.47054 * 59.99646 * 12 10 9 40 40 H 1.09002 * 109.47070 * 179.97438 * 13 12 10 41 41 H 1.08996 * 109.47407 * 59.99513 * 13 12 10 42 42 H 1.09001 * 109.47502 * 300.00518 * 14 13 12 43 43 H 1.09001 * 109.47289 * 180.02562 * 14 13 12 44 44 H 0.97003 * 120.00173 * 95.00359 * 17 15 14 45 45 H 0.97006 * 120.00552 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47153 * 300.00243 * 26 10 9 47 47 H 1.08993 * 109.47194 * 180.02562 * 26 10 9 48 48 H 0.96695 * 114.00057 * 90.00259 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 -0.0005 5 6 4.3407 2.5013 0.0000 6 6 4.2356 -0.0248 -0.0016 7 6 5.7097 -0.0813 -0.0017 8 8 6.3172 -0.1055 1.0513 9 7 6.3831 -0.1062 -1.1689 10 6 7.8470 -0.1629 -1.1690 11 1 8.1872 -0.7668 -0.3278 12 6 8.4122 1.2531 -1.0418 13 6 7.9346 2.1009 -2.2225 14 6 8.4206 1.4734 -3.5305 15 6 7.8553 0.0573 -3.6577 16 1 6.7662 0.0995 -3.6577 17 7 8.3213 -0.5438 -4.9099 18 6 7.6426 -0.3094 -6.0759 19 1 6.7636 0.3182 -6.0724 20 6 8.0837 -0.8793 -7.2623 21 7 7.4311 -0.6545 -8.3830 22 14 9.6035 -1.9653 -7.2683 23 1 9.2050 -3.3757 -7.0286 24 1 10.2823 -1.8597 -8.5849 25 1 10.5314 -1.5242 -6.1961 26 6 8.3330 -0.7904 -2.4770 27 6 3.4758 -1.2041 -0.0079 28 8 4.0991 -2.4063 -0.0146 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3634 0.0001 -1.0276 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3633 0.8899 0.5139 33 1 1.6411 2.1376 -0.0004 34 1 4.5266 2.8140 -1.0275 35 1 3.7620 3.2687 0.5142 36 1 5.2914 2.3580 0.5137 37 1 5.8984 -0.0873 -2.0089 38 1 9.5014 1.2109 -1.0414 39 1 8.0660 1.7002 -0.1099 40 1 8.3369 3.1099 -2.1316 41 1 6.8454 2.1431 -2.2225 42 1 9.5098 1.4311 -3.5305 43 1 8.0807 2.0776 -4.3717 44 1 9.1104 -1.1078 -4.9130 45 1 7.7396 -1.0524 -9.2121 46 1 7.9303 -1.7992 -2.5677 47 1 9.4221 -0.8330 -2.4769 48 1 4.2804 -2.7603 0.8667 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981257422.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:20 Heat of formation + Delta-G solvation = -71.586321 kcal Electronic energy + Delta-G solvation = -29542.316468 eV Core-core repulsion = 25595.903091 eV Total energy + Delta-G solvation = -3946.413377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.11082 -40.86307 -39.19094 -38.44625 -36.27853 -35.28707 -34.41795 -33.26013 -32.78658 -31.09963 -30.04594 -29.15514 -28.40348 -25.42909 -24.68452 -23.52257 -22.98985 -22.46595 -21.83111 -20.37521 -19.57000 -19.49765 -18.98870 -18.25753 -17.10036 -16.89404 -16.60162 -16.41816 -15.83222 -15.67204 -15.39638 -15.20112 -14.88573 -14.81792 -14.65674 -14.26612 -14.20522 -14.04261 -13.94257 -13.67500 -13.26374 -13.17464 -13.07714 -13.01414 -12.95058 -12.86859 -12.84900 -12.63637 -12.38624 -12.02920 -11.82089 -11.63367 -11.55607 -11.35000 -11.05670 -10.90039 -10.63289 -10.49208 -10.10160 -9.87369 -9.29818 -8.01586 -5.34487 -0.30396 0.03250 1.37925 1.39659 1.41106 1.48144 2.08249 2.30193 2.48966 2.62074 3.29950 3.37647 3.45716 3.54864 3.63962 3.82656 3.89319 3.98709 4.15209 4.20343 4.26382 4.29244 4.31617 4.50125 4.50820 4.57985 4.64452 4.64683 4.68622 4.78293 4.80183 4.90427 4.95170 5.00569 5.07659 5.11745 5.15793 5.16769 5.21053 5.35705 5.43247 5.49113 5.51585 5.61667 5.78453 6.22545 6.37867 6.40349 6.79647 7.04097 7.09159 7.85616 8.04037 9.19973 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012581 B = 0.003327 C = 0.003042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2224.993422 B = 8412.828428 C = 9201.262680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.158 3.842 3 C -0.179 4.179 4 C 0.007 3.993 5 C -0.123 4.123 6 C -0.225 4.225 7 C 0.587 3.413 8 O -0.567 6.567 9 N -0.700 5.700 10 C 0.156 3.844 11 H 0.088 0.912 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.128 4.128 15 C 0.179 3.821 16 H 0.038 0.962 17 N -0.752 5.752 18 C -0.225 4.225 19 H 0.056 0.944 20 C -0.065 4.065 21 N -0.985 5.985 22 Si 0.953 3.047 23 H -0.282 1.282 24 H -0.299 1.299 25 H -0.249 1.249 26 C -0.126 4.126 27 C 0.338 3.662 28 O -0.490 6.490 29 N -0.533 5.533 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.109 0.891 33 H 0.183 0.817 34 H 0.093 0.907 35 H 0.107 0.893 36 H 0.062 0.938 37 H 0.404 0.596 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.059 0.941 43 H 0.037 0.963 44 H 0.365 0.635 45 H 0.256 0.744 46 H 0.064 0.936 47 H 0.091 0.909 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.631 6.488 23.285 25.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.021 3.979 3 C -0.198 4.198 4 C 0.000 4.000 5 C -0.179 4.179 6 C -0.231 4.231 7 C 0.372 3.628 8 O -0.446 6.446 9 N -0.351 5.351 10 C 0.051 3.949 11 H 0.106 0.894 12 C -0.158 4.158 13 C -0.143 4.143 14 C -0.168 4.168 15 C 0.071 3.929 16 H 0.056 0.944 17 N -0.395 5.395 18 C -0.356 4.356 19 H 0.074 0.926 20 C -0.256 4.256 21 N -0.636 5.636 22 Si 0.781 3.219 23 H -0.208 1.208 24 H -0.226 1.226 25 H -0.173 1.173 26 C -0.165 4.165 27 C 0.159 3.841 28 O -0.300 6.300 29 N -0.254 5.254 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.128 0.872 33 H 0.200 0.800 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.080 0.920 37 H 0.240 0.760 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.056 0.944 44 H 0.198 0.802 45 H 0.065 0.935 46 H 0.083 0.917 47 H 0.110 0.890 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -8.762 5.780 23.296 25.551 hybrid contribution 1.149 -0.486 -0.805 1.484 sum -7.614 5.294 22.491 24.328 Atomic orbital electron populations 1.20927 0.85667 1.05131 1.04475 1.21887 0.98687 0.86854 0.90476 1.22189 0.93097 1.00768 1.03751 1.20607 0.94636 0.94103 0.90703 1.21010 0.99853 0.92731 1.04311 1.20903 0.94364 0.95064 1.12796 1.17835 0.86335 0.74843 0.83770 1.90766 1.70069 1.51761 1.32054 1.46214 1.07815 1.72791 1.08237 1.20960 0.78629 0.97616 0.97679 0.89402 1.21861 1.01626 0.94071 0.98273 1.21417 1.00684 0.99028 0.93211 1.22078 1.00700 0.97120 0.96915 1.20350 0.96411 0.91944 0.84184 0.94351 1.42801 1.32580 1.59655 1.04432 1.18998 1.06829 1.23705 0.86059 0.92572 1.25472 1.02401 1.02732 0.95027 1.69881 1.43678 1.50805 0.99233 0.85438 0.80358 0.79042 0.77097 1.20817 1.22575 1.17346 1.22042 1.02577 0.99053 0.92827 1.19176 0.86840 0.84628 0.93465 1.84677 1.76787 1.32897 1.35624 1.67096 1.09016 1.32082 1.17192 0.89034 0.90548 0.87199 0.79995 0.88881 0.87388 0.91952 0.76039 0.89560 0.91537 0.90807 0.92404 0.92211 0.94393 0.80181 0.93488 0.91745 0.89022 0.72115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.16 71.24 0.72 -0.42 16 2 C 0.16 2.96 6.78 42.58 0.29 3.24 16 3 C -0.18 -2.76 9.41 22.32 0.21 -2.55 16 4 C 0.01 0.14 5.95 -19.42 -0.12 0.03 16 5 C -0.12 -1.82 9.69 71.24 0.69 -1.13 16 6 C -0.22 -5.62 5.66 -19.91 -0.11 -5.73 16 7 C 0.59 15.86 5.39 86.69 0.47 16.33 16 8 O -0.57 -17.99 16.77 -4.00 -0.07 -18.06 16 9 N -0.70 -18.00 4.23 -445.72 -1.89 -19.88 16 10 C 0.16 3.83 2.78 44.99 0.13 3.95 16 11 H 0.09 2.22 7.58 -2.39 -0.02 2.20 16 12 C -0.12 -2.61 5.60 30.59 0.17 -2.44 16 13 C -0.11 -2.47 5.77 30.59 0.18 -2.30 16 14 C -0.13 -4.00 5.50 30.60 0.17 -3.83 16 15 C 0.18 6.25 2.60 44.99 0.12 6.36 16 16 H 0.04 1.43 6.44 -2.39 -0.02 1.41 16 17 N -0.75 -33.75 4.92 -322.94 -1.59 -35.34 16 18 C -0.22 -12.57 10.41 84.03 0.87 -11.69 16 19 H 0.06 3.45 8.06 -2.91 -0.02 3.42 16 20 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 21 N -0.99 -63.12 13.97 21.65 0.30 -62.82 16 22 Si 0.95 45.33 27.73 68.60 1.90 47.24 16 23 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 24 H -0.30 -14.50 7.11 99.48 0.71 -13.80 16 25 H -0.25 -10.56 6.52 99.48 0.65 -9.91 16 26 C -0.13 -3.52 5.07 30.59 0.16 -3.36 16 27 C 0.34 9.02 7.77 85.13 0.66 9.68 16 28 O -0.49 -12.72 13.01 -87.22 -1.14 -13.85 16 29 N -0.53 -13.53 10.28 -296.05 -3.04 -16.58 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.11 0.53 8.07 -2.39 -0.02 0.51 16 33 H 0.18 1.32 8.06 -2.91 -0.02 1.30 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 0.98 8.10 -2.39 -0.02 0.96 16 36 H 0.06 1.14 7.19 -2.39 -0.02 1.12 16 37 H 0.40 10.87 6.85 -92.71 -0.64 10.23 16 38 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.06 1.36 7.60 -2.39 -0.02 1.34 16 42 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.37 15.77 5.66 -92.71 -0.52 15.24 16 45 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 46 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 48 H 0.42 7.25 9.06 -74.06 -0.67 6.58 16 Total: -1.00 -77.10 388.09 -1.34 -78.44 By element: Atomic # 1 Polarization: 38.95 SS G_CDS: -0.89 Total: 38.06 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 5.07 Total: 2.79 kcal Atomic # 7 Polarization: -128.40 SS G_CDS: -6.22 Total: -134.62 kcal Atomic # 8 Polarization: -30.71 SS G_CDS: -1.20 Total: -31.91 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Total: -77.10 -1.34 -78.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981257422.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.854 kcal (2) G-P(sol) polarization free energy of solvation -77.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds