Wall clock time and date at job start Tue Mar 31 2020 17:46:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50690 * 1 3 3 C 1.38362 * 119.40805 * 2 1 4 4 C 1.38335 * 119.45577 * 180.02562 * 3 2 1 5 5 C 1.50706 * 120.82177 * 179.97438 * 4 3 2 6 6 C 1.39982 * 118.35406 * 0.27731 * 4 3 2 7 7 C 1.47523 * 120.60208 * 179.70017 * 6 4 3 8 8 O 1.21596 * 119.99669 * 89.99553 * 7 6 4 9 9 N 1.34776 * 120.00104 * 270.00726 * 7 6 4 10 10 C 1.46498 * 119.99712 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47622 * 324.99403 * 10 9 7 12 12 C 1.53005 * 109.47288 * 84.99413 * 10 9 7 13 13 C 1.52999 * 109.47206 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47319 * 300.00475 * 13 12 10 15 15 C 1.52991 * 109.47392 * 59.99574 * 14 13 12 16 16 H 1.09006 * 109.47229 * 60.00151 * 15 14 13 17 17 N 1.46498 * 109.47181 * 179.97438 * 15 14 13 18 18 C 1.36936 * 119.99914 * 275.00243 * 17 15 14 19 19 H 1.07991 * 120.00433 * 359.97438 * 18 17 15 20 20 C 1.38817 * 120.00002 * 180.02562 * 18 17 15 21 21 N 1.31612 * 120.00574 * 180.02562 * 20 18 17 22 22 Si 1.86811 * 119.99572 * 359.97438 * 20 18 17 23 23 H 1.48497 * 109.47027 * 90.00433 * 22 20 18 24 24 H 1.48499 * 109.46709 * 210.00350 * 22 20 18 25 25 H 1.48499 * 109.47342 * 330.00276 * 22 20 18 26 26 C 1.52997 * 109.47054 * 204.99158 * 10 9 7 27 27 C 1.40285 * 118.80496 * 359.46073 * 6 4 3 28 28 O 1.35428 * 119.80290 * 180.24842 * 27 6 4 29 29 N 1.31887 * 119.40701 * 180.02562 * 2 1 3 30 30 H 1.08998 * 109.47522 * 89.99915 * 1 2 3 31 31 H 1.09002 * 109.47472 * 210.00174 * 1 2 3 32 32 H 1.09001 * 109.47684 * 329.99938 * 1 2 3 33 33 H 1.07994 * 120.27317 * 0.04698 * 3 2 1 34 34 H 1.09001 * 109.46953 * 90.00209 * 5 4 3 35 35 H 1.09000 * 109.47318 * 209.99807 * 5 4 3 36 36 H 1.09000 * 109.47161 * 330.00438 * 5 4 3 37 37 H 0.96997 * 120.00174 * 359.97438 * 9 7 6 38 38 H 1.08997 * 109.47268 * 299.99983 * 12 10 9 39 39 H 1.09000 * 109.47035 * 60.00114 * 12 10 9 40 40 H 1.09002 * 109.47213 * 179.97438 * 13 12 10 41 41 H 1.09006 * 109.46745 * 59.99982 * 13 12 10 42 42 H 1.08998 * 109.46471 * 299.99447 * 14 13 12 43 43 H 1.09006 * 109.46725 * 179.97438 * 14 13 12 44 44 H 0.96999 * 119.99681 * 95.00681 * 17 15 14 45 45 H 0.97003 * 120.00311 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47445 * 300.00582 * 26 10 9 47 47 H 1.09002 * 109.47134 * 59.99823 * 26 10 9 48 48 H 0.96702 * 113.99821 * 270.29882 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5696 1.2065 -0.0005 5 6 4.3407 2.5013 -0.0011 6 6 4.2355 -0.0248 -0.0070 7 6 5.7096 -0.0814 -0.0145 8 8 6.3223 -0.1074 1.0354 9 7 6.3772 -0.1042 -1.1851 10 6 7.8411 -0.1598 -1.1925 11 1 8.2308 0.4134 -0.3513 12 6 8.2968 -1.6155 -1.0725 13 6 9.8256 -1.6736 -1.0808 14 6 10.3515 -1.0808 -2.3896 15 6 9.8958 0.3747 -2.5096 16 1 10.2858 0.9481 -1.6685 17 7 10.3999 0.9425 -3.7625 18 6 11.6621 1.4707 -3.8159 19 1 12.2859 1.4691 -2.9344 20 6 12.1396 2.0091 -5.0030 21 7 13.3529 2.5164 -5.0546 22 14 11.0602 2.0126 -6.5277 23 1 10.2650 3.2660 -6.5684 24 1 11.9148 1.9289 -7.7393 25 1 10.1429 0.8455 -6.4875 26 6 8.3674 0.4330 -2.5011 27 6 3.4757 -1.2041 -0.0011 28 8 4.0991 -2.4064 -0.0021 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 0.0000 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5138 33 1 1.6411 2.1376 0.0008 34 1 4.5271 2.8137 1.0264 35 1 5.2911 2.3581 -0.5153 36 1 3.7617 3.2688 -0.5148 37 1 5.8884 -0.0837 -2.0227 38 1 7.9218 -2.0379 -0.1403 39 1 7.9072 -2.1887 -1.9137 40 1 10.1503 -2.7106 -0.9948 41 1 10.2156 -1.1003 -0.2397 42 1 9.9615 -1.6542 -3.2306 43 1 11.4408 -1.1219 -2.3952 44 1 9.8394 0.9443 -4.5542 45 1 13.6864 2.8930 -5.8840 46 1 7.9777 -0.1401 -3.3423 47 1 8.0427 1.4701 -2.5866 48 1 4.2798 -2.7550 -0.8859 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981257423.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:23 Heat of formation + Delta-G solvation = -75.202325 kcal Electronic energy + Delta-G solvation = -28830.027523 eV Core-core repulsion = 24883.457345 eV Total energy + Delta-G solvation = -3946.570179 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.09814 -40.72627 -39.26344 -38.45768 -36.36704 -35.35652 -34.76658 -33.27270 -32.80970 -30.99118 -29.99377 -29.09077 -28.36805 -25.44623 -24.70215 -23.49734 -23.08926 -22.24639 -21.50854 -21.03299 -19.71041 -19.53485 -18.74917 -18.22702 -17.60472 -16.81762 -16.49847 -16.26319 -15.71654 -15.48421 -15.42061 -15.17422 -15.05849 -14.85539 -14.77000 -14.47916 -14.24106 -14.04056 -13.93989 -13.74197 -13.53640 -13.26003 -13.03371 -13.00318 -12.88444 -12.81198 -12.63372 -12.37209 -12.21756 -12.05245 -11.80280 -11.70218 -11.66735 -11.46014 -11.19597 -10.91499 -10.63925 -10.50981 -10.16729 -9.87079 -9.30356 -8.00208 -5.34180 -0.30984 0.01793 1.38010 1.38771 1.43507 1.50864 1.96284 2.35005 2.50556 2.52222 3.30397 3.39177 3.44206 3.53440 3.61414 3.81506 3.97314 4.00591 4.11134 4.19302 4.25720 4.28152 4.35800 4.48596 4.49501 4.54738 4.57586 4.62874 4.63223 4.74089 4.81336 4.93680 4.95866 5.00677 5.06711 5.12408 5.14490 5.17987 5.18746 5.33882 5.37949 5.48376 5.50757 5.60053 5.79740 6.23434 6.37648 6.46089 6.79302 7.07415 7.10078 7.85109 8.05853 9.21460 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002629 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.318290 B =10646.558467 C =11416.219695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.162 3.838 3 C -0.177 4.177 4 C 0.008 3.992 5 C -0.125 4.125 6 C -0.222 4.222 7 C 0.582 3.418 8 O -0.570 6.570 9 N -0.699 5.699 10 C 0.157 3.843 11 H 0.068 0.932 12 C -0.116 4.116 13 C -0.108 4.108 14 C -0.128 4.128 15 C 0.180 3.820 16 H 0.035 0.965 17 N -0.749 5.749 18 C -0.228 4.228 19 H 0.052 0.948 20 C -0.069 4.069 21 N -0.987 5.987 22 Si 0.959 3.041 23 H -0.277 1.277 24 H -0.300 1.300 25 H -0.246 1.246 26 C -0.118 4.118 27 C 0.344 3.656 28 O -0.489 6.489 29 N -0.530 5.530 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.105 0.895 33 H 0.182 0.818 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.414 0.586 38 H 0.057 0.943 39 H 0.082 0.918 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.037 0.963 44 H 0.367 0.633 45 H 0.257 0.743 46 H 0.087 0.913 47 H 0.072 0.928 48 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.510 -5.298 7.147 31.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.024 3.976 3 C -0.196 4.196 4 C 0.000 4.000 5 C -0.181 4.181 6 C -0.229 4.229 7 C 0.368 3.632 8 O -0.449 6.449 9 N -0.350 5.350 10 C 0.052 3.948 11 H 0.086 0.914 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.168 4.168 15 C 0.072 3.928 16 H 0.053 0.947 17 N -0.392 5.392 18 C -0.359 4.359 19 H 0.070 0.930 20 C -0.260 4.260 21 N -0.637 5.637 22 Si 0.786 3.214 23 H -0.204 1.204 24 H -0.227 1.227 25 H -0.171 1.171 26 C -0.156 4.156 27 C 0.164 3.836 28 O -0.299 6.299 29 N -0.251 5.251 30 H 0.117 0.883 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.199 0.801 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.129 0.871 37 H 0.251 0.749 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.201 0.799 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.090 0.910 48 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -30.290 -6.007 8.548 32.042 hybrid contribution 0.905 0.617 -1.618 1.954 sum -29.386 -5.389 6.930 30.669 Atomic orbital electron populations 1.20930 0.85628 1.04901 1.04781 1.21866 0.98640 0.86756 0.90300 1.22163 0.92890 1.00844 1.03732 1.20556 0.94670 0.93890 0.90885 1.21007 0.99926 0.93200 1.03971 1.20795 0.93769 0.95159 1.13165 1.17987 0.86612 0.74850 0.83782 1.90811 1.69920 1.50874 1.33261 1.45944 1.07068 1.73678 1.08287 1.20807 0.78777 0.97080 0.98114 0.91398 1.21810 0.95664 0.95565 1.02393 1.21409 0.94989 1.01283 0.96964 1.22090 0.99783 0.97309 0.97664 1.20252 0.92232 0.92628 0.87681 0.94666 1.42711 1.14397 1.72531 1.09548 1.18985 0.91047 1.29478 0.96350 0.93045 1.25564 0.97944 1.01173 1.01305 1.69899 1.18829 1.47427 1.27587 0.85351 0.78357 0.78947 0.78732 1.20353 1.22732 1.17074 1.21916 0.94905 1.01843 0.96985 1.19098 0.86735 0.84463 0.93276 1.84721 1.76757 1.32802 1.35653 1.67126 1.08870 1.31930 1.17211 0.88282 0.90796 0.87621 0.80117 0.89796 0.91944 0.87117 0.74922 0.92391 0.89920 0.90595 0.92899 0.91692 0.94448 0.79938 0.93452 0.89489 0.90970 0.71893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 71.23 0.72 0.00 16 2 C 0.16 2.31 6.78 42.58 0.29 2.60 16 3 C -0.18 -2.07 9.41 22.32 0.21 -1.86 16 4 C 0.01 0.13 5.95 -19.42 -0.12 0.01 16 5 C -0.12 -1.69 9.69 71.24 0.69 -0.99 16 6 C -0.22 -4.73 5.66 -19.91 -0.11 -4.85 16 7 C 0.58 14.56 5.38 86.69 0.47 15.02 16 8 O -0.57 -19.66 16.77 -4.02 -0.07 -19.72 16 9 N -0.70 -13.88 5.07 -445.72 -2.26 -16.14 16 10 C 0.16 3.80 2.45 44.99 0.11 3.91 16 11 H 0.07 2.01 7.58 -2.39 -0.02 1.99 16 12 C -0.12 -2.69 5.50 30.60 0.17 -2.52 16 13 C -0.11 -2.84 5.92 30.59 0.18 -2.66 16 14 C -0.13 -4.17 5.50 30.59 0.17 -4.01 16 15 C 0.18 6.43 2.77 44.97 0.12 6.56 16 16 H 0.04 1.41 8.08 -2.38 -0.02 1.39 16 17 N -0.75 -33.25 4.93 -323.02 -1.59 -34.85 16 18 C -0.23 -12.77 10.41 84.03 0.87 -11.89 16 19 H 0.05 3.22 8.06 -2.92 -0.02 3.20 16 20 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 21 N -0.99 -63.18 13.97 21.65 0.30 -62.87 16 22 Si 0.96 44.20 27.74 68.60 1.90 46.11 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 24 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 25 H -0.25 -9.97 6.52 99.48 0.65 -9.32 16 26 C -0.12 -3.04 4.86 30.58 0.15 -2.89 16 27 C 0.34 7.52 7.77 85.13 0.66 8.18 16 28 O -0.49 -10.24 13.01 -87.24 -1.14 -11.38 16 29 N -0.53 -10.91 10.28 -296.05 -3.04 -13.95 16 30 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.20 8.07 -2.39 -0.02 0.18 16 33 H 0.18 0.73 8.06 -2.91 -0.02 0.70 16 34 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.06 1.03 7.18 -2.39 -0.02 1.01 16 36 H 0.11 0.82 8.10 -2.39 -0.02 0.80 16 37 H 0.41 5.78 8.59 -92.71 -0.80 4.99 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 44 H 0.37 15.24 5.66 -92.71 -0.52 14.72 16 45 H 0.26 15.66 8.31 -92.71 -0.77 14.89 16 46 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 48 H 0.42 4.49 9.06 -74.06 -0.67 3.82 16 Total: -1.00 -81.10 392.52 -1.89 -83.00 By element: Atomic # 1 Polarization: 29.80 SS G_CDS: -1.05 Total: 28.74 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 5.06 Total: 1.07 kcal Atomic # 7 Polarization: -121.22 SS G_CDS: -6.59 Total: -127.81 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.20 Total: -31.10 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.90 Total: 46.11 kcal Total: -81.10 -1.89 -83.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981257423.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.793 kcal (2) G-P(sol) polarization free energy of solvation -81.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds