Wall clock time and date at job start Tue Mar 31 2020 17:46:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38353 * 119.40458 * 2 1 4 4 C 1.38337 * 119.45830 * 180.02562 * 3 2 1 5 5 C 1.50705 * 120.82798 * 179.97438 * 4 3 2 6 6 C 1.39989 * 118.34670 * 359.97438 * 4 3 2 7 7 C 1.47528 * 120.59511 * 179.97438 * 6 4 3 8 8 O 1.21593 * 120.00046 * 90.00201 * 7 6 4 9 9 N 1.34777 * 119.99944 * 269.72756 * 7 6 4 10 10 C 1.46499 * 120.00195 * 180.27864 * 9 7 6 11 11 H 1.09001 * 109.47173 * 34.99451 * 10 9 7 12 12 C 1.52997 * 109.46898 * 274.99732 * 10 9 7 13 13 C 1.53000 * 109.47350 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.46939 * 59.99752 * 13 12 10 15 15 C 1.52997 * 109.47302 * 300.00277 * 14 13 12 16 16 H 1.09002 * 109.47107 * 300.00417 * 15 14 13 17 17 N 1.46496 * 109.47126 * 180.02562 * 15 14 13 18 18 C 1.36937 * 120.00259 * 84.99935 * 17 15 14 19 19 H 1.07998 * 119.99918 * 0.02562 * 18 17 15 20 20 C 1.38810 * 119.99862 * 179.97438 * 18 17 15 21 21 N 1.31616 * 120.00309 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99680 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47105 * 60.00249 * 22 20 18 24 24 H 1.48501 * 109.46963 * 180.02562 * 22 20 18 25 25 H 1.48495 * 109.47556 * 300.00393 * 22 20 18 26 26 C 1.52995 * 109.47695 * 154.99708 * 10 9 7 27 27 C 1.40283 * 118.80619 * 0.25500 * 6 4 3 28 28 O 1.35423 * 119.79546 * 179.74653 * 27 6 4 29 29 N 1.31879 * 119.40588 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.47383 * 89.99648 * 1 2 3 31 31 H 1.09002 * 109.47028 * 209.99519 * 1 2 3 32 32 H 1.08998 * 109.47176 * 329.99807 * 1 2 3 33 33 H 1.08001 * 120.27172 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.46471 * 270.01856 * 5 4 3 35 35 H 1.09001 * 109.46595 * 30.01488 * 5 4 3 36 36 H 1.08997 * 109.47321 * 150.02218 * 5 4 3 37 37 H 0.97000 * 119.99736 * 0.27136 * 9 7 6 38 38 H 1.08993 * 109.47268 * 299.99871 * 12 10 9 39 39 H 1.09006 * 109.47495 * 60.00085 * 12 10 9 40 40 H 1.09001 * 109.47157 * 299.99986 * 13 12 10 41 41 H 1.09000 * 109.47415 * 180.02562 * 13 12 10 42 42 H 1.08998 * 109.46918 * 180.02562 * 14 13 12 43 43 H 1.08993 * 109.46833 * 60.00389 * 14 13 12 44 44 H 0.96998 * 119.99647 * 265.00047 * 17 15 14 45 45 H 0.97000 * 120.00069 * 179.97438 * 21 20 18 46 46 H 1.09003 * 109.46796 * 300.00494 * 26 10 9 47 47 H 1.09001 * 109.47020 * 59.99649 * 26 10 9 48 48 H 0.96708 * 113.99987 * 90.00293 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.3408 2.5014 -0.0011 6 6 4.2355 -0.0248 -0.0005 7 6 5.7097 -0.0813 -0.0016 8 8 6.3180 -0.1042 1.0509 9 7 6.3819 -0.1132 -1.1694 10 6 7.8456 -0.1754 -1.1705 11 1 8.1843 -0.7774 -0.3273 12 6 8.4163 1.2389 -1.0493 13 6 9.9449 1.1740 -1.0498 14 6 10.4279 0.5393 -2.3556 15 6 9.8572 -0.8751 -2.4768 16 1 10.1955 -1.4769 -1.6333 17 7 10.3202 -1.4830 -3.7267 18 6 11.5361 -2.1111 -3.7734 19 1 12.1536 -2.1586 -2.8887 20 6 11.9745 -2.6875 -4.9577 21 7 11.2212 -2.6308 -6.0355 22 14 13.6335 -3.5436 -5.0215 23 1 13.6492 -4.6658 -4.0490 24 1 13.8661 -4.0709 -6.3902 25 1 14.7044 -2.5745 -4.6763 26 6 8.3282 -0.8098 -2.4764 27 6 3.4757 -1.2041 -0.0054 28 8 4.0992 -2.4062 -0.0107 29 7 2.1545 -1.1489 -0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 1.6410 2.1375 0.0004 34 1 4.5259 2.8134 -1.0290 35 1 3.7622 3.2690 0.5130 36 1 5.2917 2.3583 0.5120 37 1 5.8966 -0.0950 -2.0090 38 1 8.0776 1.8409 -1.8924 39 1 8.0726 1.6910 -0.1188 40 1 10.2833 0.5721 -0.2064 41 1 10.3515 2.1816 -0.9630 42 1 11.5168 0.4926 -2.3558 43 1 10.0895 1.1411 -3.1989 44 1 9.7653 -1.4406 -4.5212 45 1 11.5277 -3.0333 -6.8631 46 1 7.9215 -1.8175 -2.5628 47 1 7.9894 -0.2079 -3.3197 48 1 4.2804 -2.7592 0.8712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981257424.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:27 Heat of formation + Delta-G solvation = -78.138399 kcal Electronic energy + Delta-G solvation = -28740.386971 eV Core-core repulsion = 24793.689475 eV Total energy + Delta-G solvation = -3946.697496 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.08739 -40.70744 -39.20572 -38.44885 -36.26355 -35.31256 -34.76949 -32.98017 -32.78203 -30.91531 -29.70120 -28.97443 -28.36741 -25.72773 -24.71178 -23.48966 -23.06760 -22.28718 -21.47397 -20.88429 -19.53669 -19.34503 -18.64602 -18.24694 -17.60911 -16.73995 -16.57101 -16.15417 -15.75943 -15.53073 -15.35098 -15.18250 -15.04375 -14.93666 -14.65267 -14.32521 -14.19982 -13.98640 -13.91563 -13.57400 -13.42359 -13.24335 -12.96435 -12.91473 -12.85930 -12.79679 -12.63606 -12.30078 -12.20185 -12.06731 -11.98318 -11.66691 -11.65974 -11.41198 -11.15372 -10.87501 -10.63424 -10.48386 -10.14621 -9.87724 -9.00801 -7.94272 -5.22356 -0.31225 0.02899 1.36869 1.46520 1.49136 1.55088 2.00897 2.28148 2.56013 2.62993 3.37736 3.39520 3.54891 3.57204 3.64665 3.83261 3.98419 4.02230 4.18105 4.23845 4.29783 4.29937 4.41589 4.49978 4.52238 4.55745 4.58387 4.65242 4.67035 4.75109 4.81229 4.95689 5.00136 5.01973 5.08224 5.13309 5.15554 5.19477 5.21204 5.34330 5.39816 5.49402 5.51408 5.52343 5.64946 6.28060 6.38295 6.38613 6.79654 7.04107 7.34284 8.10019 8.33634 9.28992 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018839 B = 0.002444 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1485.945281 B =11455.998943 C =12225.819255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.160 3.840 3 C -0.176 4.176 4 C 0.009 3.991 5 C -0.123 4.123 6 C -0.222 4.222 7 C 0.584 3.416 8 O -0.570 6.570 9 N -0.700 5.700 10 C 0.158 3.842 11 H 0.070 0.930 12 C -0.114 4.114 13 C -0.106 4.106 14 C -0.126 4.126 15 C 0.178 3.822 16 H 0.036 0.964 17 N -0.736 5.736 18 C -0.238 4.238 19 H 0.073 0.927 20 C -0.076 4.076 21 N -0.969 5.969 22 Si 0.970 3.030 23 H -0.280 1.280 24 H -0.295 1.295 25 H -0.278 1.278 26 C -0.115 4.115 27 C 0.338 3.662 28 O -0.492 6.492 29 N -0.533 5.533 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.109 0.891 33 H 0.185 0.815 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.409 0.591 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.079 0.921 42 H 0.042 0.958 43 H 0.054 0.946 44 H 0.373 0.627 45 H 0.251 0.749 46 H 0.055 0.945 47 H 0.074 0.926 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.904 13.843 14.325 30.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.022 3.978 3 C -0.195 4.195 4 C 0.001 3.999 5 C -0.180 4.180 6 C -0.229 4.229 7 C 0.370 3.630 8 O -0.449 6.449 9 N -0.349 5.349 10 C 0.054 3.946 11 H 0.088 0.912 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.166 4.166 15 C 0.069 3.931 16 H 0.054 0.946 17 N -0.376 5.376 18 C -0.370 4.370 19 H 0.091 0.909 20 C -0.268 4.268 21 N -0.620 5.620 22 Si 0.799 3.201 23 H -0.206 1.206 24 H -0.222 1.222 25 H -0.204 1.204 26 C -0.154 4.154 27 C 0.159 3.841 28 O -0.302 6.302 29 N -0.254 5.254 30 H 0.113 0.887 31 H 0.093 0.907 32 H 0.128 0.872 33 H 0.202 0.798 34 H 0.118 0.882 35 H 0.126 0.874 36 H 0.076 0.924 37 H 0.245 0.755 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.073 0.927 44 H 0.205 0.795 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.093 0.907 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -22.720 12.970 14.529 29.925 hybrid contribution 1.398 -0.584 -0.581 1.623 sum -21.322 12.386 13.948 28.330 Atomic orbital electron populations 1.20937 0.85632 1.05065 1.04601 1.21900 0.98677 0.86823 0.90374 1.22184 0.92945 1.00767 1.03620 1.20608 0.94646 0.93946 0.90674 1.21018 0.99661 0.92680 1.04599 1.20838 0.93783 0.95194 1.13056 1.17957 0.86577 0.74779 0.83712 1.90792 1.70198 1.51528 1.32406 1.46025 1.07274 1.73107 1.08517 1.20839 0.78529 0.97503 0.97772 0.91212 1.21807 0.95580 0.95414 1.02464 1.21417 0.94843 1.01295 0.96902 1.22092 0.99851 0.97197 0.97506 1.20310 0.91765 0.92723 0.88291 0.94631 1.42574 1.19872 1.66179 1.08956 1.19549 0.95393 1.26397 0.95614 0.90928 1.25519 1.02205 1.03277 0.95820 1.69799 1.39318 1.51775 1.01117 0.85266 0.80090 0.78556 0.76203 1.20631 1.22168 1.20379 1.21886 0.95981 1.00629 0.96918 1.19175 0.86847 0.84552 0.93501 1.84667 1.76823 1.33055 1.35667 1.67113 1.08886 1.32167 1.17199 0.88736 0.90742 0.87235 0.79814 0.88247 0.87425 0.92421 0.75490 0.90465 0.91539 0.92357 0.90212 0.93911 0.92704 0.79518 0.94072 0.92621 0.90690 0.72110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.16 71.24 0.72 -0.11 16 2 C 0.16 2.48 6.78 42.58 0.29 2.77 16 3 C -0.18 -2.11 9.41 22.32 0.21 -1.90 16 4 C 0.01 0.15 5.95 -19.41 -0.12 0.03 16 5 C -0.12 -1.46 9.69 71.24 0.69 -0.77 16 6 C -0.22 -5.06 5.66 -19.91 -0.11 -5.17 16 7 C 0.58 15.50 5.39 86.69 0.47 15.97 16 8 O -0.57 -18.94 16.77 -4.01 -0.07 -19.00 16 9 N -0.70 -17.10 5.07 -445.72 -2.26 -19.36 16 10 C 0.16 4.38 2.45 44.99 0.11 4.49 16 11 H 0.07 2.24 7.58 -2.39 -0.02 2.22 16 12 C -0.11 -2.77 5.49 30.59 0.17 -2.61 16 13 C -0.11 -2.81 5.92 30.60 0.18 -2.63 16 14 C -0.13 -4.34 5.50 30.59 0.17 -4.17 16 15 C 0.18 6.99 2.77 45.01 0.12 7.12 16 16 H 0.04 1.48 8.08 -2.39 -0.02 1.47 16 17 N -0.74 -37.16 5.12 -322.89 -1.65 -38.81 16 18 C -0.24 -13.31 9.93 84.03 0.83 -12.47 16 19 H 0.07 3.94 7.83 -2.91 -0.02 3.92 16 20 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 21 N -0.97 -59.63 13.06 21.65 0.28 -59.35 16 22 Si 0.97 46.70 29.55 68.60 2.03 48.72 16 23 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 24 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 26 C -0.12 -3.71 4.86 30.61 0.15 -3.56 16 27 C 0.34 8.29 7.77 85.13 0.66 8.96 16 28 O -0.49 -12.28 13.01 -87.18 -1.13 -13.41 16 29 N -0.53 -12.11 10.28 -296.06 -3.04 -15.15 16 30 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 0.22 8.07 -2.39 -0.02 0.20 16 33 H 0.18 0.67 8.06 -2.91 -0.02 0.65 16 34 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.11 0.68 8.10 -2.39 -0.02 0.66 16 36 H 0.06 0.95 7.19 -2.39 -0.02 0.94 16 37 H 0.41 8.66 8.59 -92.71 -0.80 7.87 16 38 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 40 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.37 20.08 7.80 -92.71 -0.72 19.36 16 45 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 46 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 48 H 0.42 7.28 9.06 -74.05 -0.67 6.61 16 Total: -1.00 -75.94 395.65 -2.03 -77.97 By element: Atomic # 1 Polarization: 37.57 SS G_CDS: -1.19 Total: 36.38 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 5.02 Total: 2.02 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -6.68 Total: -132.67 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.20 Total: -32.41 kcal Atomic # 14 Polarization: 46.70 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.94 -2.03 -77.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981257424.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.171 kcal (2) G-P(sol) polarization free energy of solvation -75.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds