Wall clock time and date at job start Tue Mar 31 2020 17:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38362 * 119.40596 * 2 1 4 4 C 1.38338 * 119.45490 * 179.72057 * 3 2 1 5 5 C 1.50697 * 120.82432 * 180.25608 * 4 3 2 6 6 C 1.39991 * 118.34834 * 0.49384 * 4 3 2 7 7 C 1.47527 * 120.59554 * 179.78302 * 6 4 3 8 8 O 1.21592 * 119.99745 * 269.72168 * 7 6 4 9 9 N 1.34770 * 120.00106 * 89.72000 * 7 6 4 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52999 * 109.46626 * 60.00049 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.36936 * 119.99711 * 85.00171 * 17 15 14 19 19 H 1.08004 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00139 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99523 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00196 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47311 * 59.99707 * 22 20 18 24 24 H 1.48499 * 109.46959 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47261 * 299.99536 * 22 20 18 26 26 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 27 27 C 1.40281 * 118.80695 * 359.50969 * 6 4 3 28 28 O 1.35426 * 119.79879 * 180.27647 * 27 6 4 29 29 N 1.31880 * 119.40571 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47281 * 270.02643 * 1 2 3 31 31 H 1.09000 * 109.46875 * 30.02306 * 1 2 3 32 32 H 1.09002 * 109.46846 * 150.02088 * 1 2 3 33 33 H 1.07989 * 120.27278 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47210 * 270.24677 * 5 4 3 35 35 H 1.09000 * 109.47279 * 30.24651 * 5 4 3 36 36 H 1.09000 * 109.47644 * 150.24799 * 5 4 3 37 37 H 0.97005 * 120.00370 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 40 40 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 42 42 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 44 44 H 0.97001 * 120.00071 * 265.00501 * 17 15 14 45 45 H 0.97004 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47153 * 59.99757 * 26 10 9 47 47 H 1.08996 * 109.46952 * 179.97438 * 26 10 9 48 48 H 0.96693 * 114.00619 * 89.99912 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5698 1.2065 0.0059 5 6 4.3408 2.5013 0.0118 6 6 4.2356 -0.0249 0.0010 7 6 5.7097 -0.0814 0.0021 8 8 6.3180 -0.1052 -1.0505 9 7 6.3823 -0.1067 1.1698 10 6 7.8462 -0.1623 1.1709 11 1 8.1875 -0.7653 0.3294 12 6 8.4105 1.2543 1.0452 13 6 7.9314 2.1006 2.2263 14 6 8.4170 1.4724 3.5341 15 6 7.8527 0.0559 3.6597 16 1 6.7635 0.0972 3.6590 17 7 8.3181 -0.5460 4.9118 18 6 7.6385 -0.3131 6.0775 19 1 6.7591 0.3139 6.0739 20 6 8.0797 -0.8829 7.2639 21 7 9.1511 -1.6473 7.2682 22 14 7.1522 -0.5658 8.8540 23 1 5.7563 -1.0544 8.7188 24 1 7.8214 -1.2831 9.9689 25 1 7.1411 0.8917 9.1385 26 6 8.3318 -0.7906 2.4787 27 6 3.4758 -1.2041 0.0010 28 8 4.0992 -2.4064 0.0020 29 7 2.1546 -1.1489 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6412 2.1375 -0.0004 34 1 4.5273 2.8179 -1.0144 35 1 3.7618 3.2667 0.5286 36 1 5.2911 2.3560 0.5255 37 1 5.8971 -0.0874 2.0095 38 1 9.4997 1.2128 1.0456 39 1 8.0646 1.7019 0.1135 40 1 8.3330 3.1100 2.1365 41 1 6.8422 2.1421 2.2255 42 1 8.0760 2.0756 4.3755 43 1 9.5062 1.4311 3.5350 44 1 9.1078 -1.1094 4.9149 45 1 9.4593 -2.0458 8.0972 46 1 7.9298 -1.7998 2.5682 47 1 9.4210 -0.8323 2.4792 48 1 4.2796 -2.7552 0.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981257425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:31 Heat of formation + Delta-G solvation = -48.387097 kcal Electronic energy + Delta-G solvation = -29522.157740 eV Core-core repulsion = 25576.750357 eV Total energy + Delta-G solvation = -3945.407383 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20043 -39.76107 -37.89485 -37.55754 -34.53012 -34.47118 -33.05974 -32.03357 -31.21625 -29.90364 -28.49256 -27.90317 -27.69405 -23.95789 -23.64740 -22.42761 -21.95964 -21.17373 -20.81285 -18.90432 -18.64019 -18.04777 -17.43425 -17.11808 -16.10175 -15.61692 -15.42006 -14.92229 -14.69956 -14.46980 -14.36970 -13.96145 -13.67326 -13.61229 -13.51844 -13.28785 -13.21644 -13.08984 -12.70919 -12.47775 -12.26938 -12.14786 -12.11451 -11.92698 -11.86073 -11.78703 -11.05525 -10.92125 -10.83662 -10.45888 -10.32199 -10.26287 -10.23116 -9.81185 -9.79959 -9.59868 -9.58137 -9.05708 -9.01362 -8.90085 -7.02986 -5.82856 -3.12134 0.52978 0.83026 2.49304 3.00137 3.23229 3.37352 3.38503 3.43337 3.44577 4.18957 4.23312 4.50815 4.57564 4.70799 4.89024 4.96116 5.03372 5.04204 5.08164 5.13207 5.23739 5.27108 5.30332 5.43403 5.50968 5.53717 5.62718 5.65947 5.70185 5.72206 5.79709 5.87901 5.91664 5.99840 6.04504 6.17515 6.18724 6.22483 6.43746 6.50636 6.58234 6.65176 6.87518 7.02268 7.20864 7.48201 7.60947 7.62078 8.15146 8.35450 9.46697 10.03862 10.38255 11.39546 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.003414 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.848291 B = 8200.514963 C = 9306.078137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.188 4.188 4 C 0.013 3.987 5 C -0.126 4.126 6 C -0.202 4.202 7 C 0.576 3.424 8 O -0.529 6.529 9 N -0.709 5.709 10 C 0.150 3.850 11 H 0.086 0.914 12 C -0.128 4.128 13 C -0.115 4.115 14 C -0.137 4.137 15 C 0.181 3.819 16 H 0.040 0.960 17 N -0.724 5.724 18 C -0.242 4.242 19 H 0.069 0.931 20 C -0.011 4.011 21 N -0.932 5.932 22 Si 0.905 3.095 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.286 1.286 26 C -0.133 4.133 27 C 0.357 3.643 28 O -0.474 6.474 29 N -0.506 5.506 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.077 0.923 37 H 0.403 0.597 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.056 0.944 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.070 0.930 47 H 0.078 0.922 48 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.613 7.460 -15.239 21.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.208 4.208 4 C 0.005 3.995 5 C -0.182 4.182 6 C -0.209 4.209 7 C 0.360 3.640 8 O -0.405 6.405 9 N -0.361 5.361 10 C 0.046 3.954 11 H 0.104 0.896 12 C -0.167 4.167 13 C -0.153 4.153 14 C -0.177 4.177 15 C 0.071 3.929 16 H 0.058 0.942 17 N -0.365 5.365 18 C -0.373 4.373 19 H 0.087 0.913 20 C -0.207 4.207 21 N -0.580 5.580 22 Si 0.736 3.264 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.213 1.213 26 C -0.172 4.172 27 C 0.177 3.823 28 O -0.282 6.282 29 N -0.226 5.226 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.239 0.761 38 H 0.090 0.910 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.218 0.782 45 H 0.066 0.934 46 H 0.088 0.912 47 H 0.096 0.904 48 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -12.686 6.692 -16.420 21.802 hybrid contribution 0.121 0.577 1.879 1.969 sum -12.565 7.268 -14.541 20.547 Atomic orbital electron populations 1.20804 0.88144 1.03865 1.03611 1.21182 0.96996 0.87068 0.91767 1.21775 0.93639 0.99627 1.05725 1.20258 0.93670 0.94171 0.91437 1.20971 1.00384 0.93101 1.03738 1.20875 0.95162 0.94117 1.10733 1.17748 0.85858 0.76073 0.84338 1.90800 1.69123 1.49245 1.31376 1.46253 1.07892 1.73903 1.08101 1.21018 0.78433 0.96877 0.99072 0.89595 1.21907 1.00918 0.95310 0.98515 1.21518 1.00281 0.98266 0.95284 1.22286 1.00906 0.99032 0.95506 1.20134 0.96111 0.90589 0.86054 0.94247 1.42411 1.33339 1.58316 1.02393 1.19156 1.07184 1.24964 0.85965 0.91347 1.24733 0.98050 1.00155 0.97808 1.69645 1.25077 1.36551 1.26683 0.86304 0.79003 0.77586 0.83492 1.21294 1.21663 1.21277 1.22133 1.01971 0.99836 0.93269 1.18991 0.86348 0.84485 0.92477 1.84730 1.76606 1.32638 1.34227 1.67049 1.09132 1.30426 1.16041 0.89774 0.90235 0.90118 0.83806 0.89650 0.90062 0.90397 0.76078 0.90961 0.92090 0.92767 0.92749 0.92080 0.92481 0.78213 0.93403 0.91168 0.90380 0.73444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.70 10.16 36.01 0.37 -0.33 16 2 C 0.17 1.69 6.78 -82.52 -0.56 1.13 16 3 C -0.19 -1.68 9.41 -39.50 -0.37 -2.05 16 4 C 0.01 0.13 5.95 -103.93 -0.62 -0.49 16 5 C -0.13 -1.08 9.69 36.00 0.35 -0.73 16 6 C -0.20 -2.60 5.66 -104.69 -0.59 -3.19 16 7 C 0.58 8.10 5.39 -12.48 -0.07 8.04 16 8 O -0.53 -9.29 16.77 5.29 0.09 -9.20 16 9 N -0.71 -8.97 4.23 -54.85 -0.23 -9.20 16 10 C 0.15 2.00 2.78 -67.93 -0.19 1.81 16 11 H 0.09 1.21 7.58 -51.93 -0.39 0.82 16 12 C -0.13 -1.61 5.60 -26.73 -0.15 -1.76 16 13 C -0.12 -1.49 5.77 -26.73 -0.15 -1.64 16 14 C -0.14 -2.23 5.50 -26.73 -0.15 -2.38 16 15 C 0.18 3.20 2.60 -67.93 -0.18 3.03 16 16 H 0.04 0.70 6.44 -51.93 -0.33 0.36 16 17 N -0.72 -16.93 5.12 -53.42 -0.27 -17.20 16 18 C -0.24 -6.36 9.93 -15.06 -0.15 -6.51 16 19 H 0.07 1.74 7.83 -52.48 -0.41 1.33 16 20 C -0.01 -0.31 5.50 -17.43 -0.10 -0.41 16 21 N -0.93 -27.30 13.06 55.49 0.72 -26.58 16 22 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 26 C -0.13 -1.99 5.08 -26.73 -0.14 -2.13 16 27 C 0.36 4.75 7.77 -16.61 -0.13 4.63 16 28 O -0.47 -6.09 13.01 -17.97 -0.23 -6.33 16 29 N -0.51 -6.49 10.28 -9.21 -0.09 -6.58 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.08 0.34 8.07 -51.93 -0.42 -0.08 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 36 H 0.08 0.76 6.85 -51.93 -0.36 0.40 16 37 H 0.40 4.88 6.85 -40.82 -0.28 4.60 16 38 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.67 7.27 -51.93 -0.38 0.30 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.38 9.68 7.80 -40.82 -0.32 9.36 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 47 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 48 H 0.41 3.47 9.06 45.56 0.41 3.88 16 LS Contribution 390.54 15.07 5.89 5.89 Total: -1.00 -33.62 390.54 -8.66 -42.28 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -6.68 Total: 13.24 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: -2.82 Total: -2.99 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.12 Total: -59.56 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.15 Total: -15.53 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -33.62 -8.66 -42.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981257425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.104 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds