Wall clock time and date at job start Tue Mar 31 2020 17:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38362 * 119.40596 * 2 1 4 4 C 1.38338 * 119.45490 * 179.72057 * 3 2 1 5 5 C 1.50697 * 120.82432 * 180.25608 * 4 3 2 6 6 C 1.39991 * 118.34834 * 0.49384 * 4 3 2 7 7 C 1.47527 * 120.59554 * 179.78302 * 6 4 3 8 8 O 1.21592 * 119.99745 * 269.72168 * 7 6 4 9 9 N 1.34770 * 120.00106 * 89.72000 * 7 6 4 10 10 C 1.46500 * 120.00256 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.46596 * 325.00243 * 10 9 7 12 12 C 1.53006 * 109.47249 * 84.99846 * 10 9 7 13 13 C 1.52999 * 109.46626 * 60.00049 * 12 10 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 10 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.36936 * 119.99711 * 85.00171 * 17 15 14 19 19 H 1.08004 * 119.99862 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00139 * 180.02562 * 18 17 15 21 21 N 1.31619 * 119.99523 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 120.00196 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47311 * 59.99707 * 22 20 18 24 24 H 1.48499 * 109.46959 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47261 * 299.99536 * 22 20 18 26 26 C 1.52997 * 109.47473 * 205.00145 * 10 9 7 27 27 C 1.40281 * 118.80695 * 359.50969 * 6 4 3 28 28 O 1.35426 * 119.79879 * 180.27647 * 27 6 4 29 29 N 1.31880 * 119.40571 * 179.97438 * 2 1 3 30 30 H 1.08998 * 109.47281 * 270.02643 * 1 2 3 31 31 H 1.09000 * 109.46875 * 30.02306 * 1 2 3 32 32 H 1.09002 * 109.46846 * 150.02088 * 1 2 3 33 33 H 1.07989 * 120.27278 * 359.97438 * 3 2 1 34 34 H 1.09004 * 109.47210 * 270.24677 * 5 4 3 35 35 H 1.09000 * 109.47279 * 30.24651 * 5 4 3 36 36 H 1.09000 * 109.47644 * 150.24799 * 5 4 3 37 37 H 0.97005 * 120.00370 * 359.97438 * 9 7 6 38 38 H 1.08993 * 109.46955 * 180.02562 * 12 10 9 39 39 H 1.09000 * 109.47050 * 300.00351 * 12 10 9 40 40 H 1.09002 * 109.46719 * 180.02562 * 13 12 10 41 41 H 1.08993 * 109.47839 * 299.99931 * 13 12 10 42 42 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 43 43 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 44 44 H 0.97001 * 120.00071 * 265.00501 * 17 15 14 45 45 H 0.97004 * 120.00005 * 180.02562 * 21 20 18 46 46 H 1.09002 * 109.47153 * 59.99757 * 26 10 9 47 47 H 1.08996 * 109.46952 * 179.97438 * 26 10 9 48 48 H 0.96693 * 114.00619 * 89.99912 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5698 1.2065 0.0059 5 6 4.3408 2.5013 0.0118 6 6 4.2356 -0.0249 0.0010 7 6 5.7097 -0.0814 0.0021 8 8 6.3180 -0.1052 -1.0505 9 7 6.3823 -0.1067 1.1698 10 6 7.8462 -0.1623 1.1709 11 1 8.1875 -0.7653 0.3294 12 6 8.4105 1.2543 1.0452 13 6 7.9314 2.1006 2.2263 14 6 8.4170 1.4724 3.5341 15 6 7.8527 0.0559 3.6597 16 1 6.7635 0.0972 3.6590 17 7 8.3181 -0.5460 4.9118 18 6 7.6385 -0.3131 6.0775 19 1 6.7591 0.3139 6.0739 20 6 8.0797 -0.8829 7.2639 21 7 9.1511 -1.6473 7.2682 22 14 7.1522 -0.5658 8.8540 23 1 5.7563 -1.0544 8.7188 24 1 7.8214 -1.2831 9.9689 25 1 7.1411 0.8917 9.1385 26 6 8.3318 -0.7906 2.4787 27 6 3.4758 -1.2041 0.0010 28 8 4.0992 -2.4064 0.0020 29 7 2.1546 -1.1489 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6412 2.1375 -0.0004 34 1 4.5273 2.8179 -1.0144 35 1 3.7618 3.2667 0.5286 36 1 5.2911 2.3560 0.5255 37 1 5.8971 -0.0874 2.0095 38 1 9.4997 1.2128 1.0456 39 1 8.0646 1.7019 0.1135 40 1 8.3330 3.1100 2.1365 41 1 6.8422 2.1421 2.2255 42 1 8.0760 2.0756 4.3755 43 1 9.5062 1.4311 3.5350 44 1 9.1078 -1.1094 4.9149 45 1 9.4593 -2.0458 8.0972 46 1 7.9298 -1.7998 2.5682 47 1 9.4210 -0.8323 2.4792 48 1 4.2796 -2.7552 0.8856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981257425.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:30 Heat of formation + Delta-G solvation = -74.071166 kcal Electronic energy + Delta-G solvation = -29523.271485 eV Core-core repulsion = 25576.750357 eV Total energy + Delta-G solvation = -3946.521128 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.11659 -40.84787 -39.14223 -38.45430 -36.15241 -35.30350 -34.40278 -32.97168 -32.75567 -31.05603 -29.67935 -29.10964 -28.39058 -25.69447 -24.70121 -23.48739 -22.99030 -22.48560 -21.81422 -20.16157 -19.54342 -19.30449 -18.83502 -18.22703 -17.15836 -16.92643 -16.57325 -16.23197 -15.89928 -15.67234 -15.27305 -15.15853 -14.97159 -14.80288 -14.68882 -14.21812 -14.10509 -13.94458 -13.82331 -13.51759 -13.25222 -13.16228 -13.04165 -12.98937 -12.88529 -12.80295 -12.76669 -12.62562 -12.26252 -12.07995 -11.94921 -11.59763 -11.48342 -11.35189 -11.00989 -10.83158 -10.61708 -10.51810 -10.10934 -9.86002 -8.97912 -7.92032 -5.19838 -0.29732 0.03425 1.40678 1.48440 1.50145 1.56231 2.04579 2.35215 2.55241 2.57321 3.40785 3.41835 3.55374 3.58682 3.73379 3.86880 3.91297 3.99391 4.19094 4.27894 4.29906 4.31766 4.35273 4.50319 4.55425 4.59234 4.65470 4.66863 4.71784 4.80990 4.81038 4.92983 4.96002 5.00932 5.10103 5.12789 5.17745 5.18186 5.25790 5.37222 5.44219 5.50767 5.52494 5.55414 5.66560 6.29975 6.36482 6.43657 6.79927 7.06707 7.36489 8.13390 8.35335 9.31289 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011202 B = 0.003414 C = 0.003008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2498.848291 B = 8200.514963 C = 9306.078137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.159 3.841 3 C -0.178 4.178 4 C 0.008 3.992 5 C -0.124 4.124 6 C -0.224 4.224 7 C 0.585 3.415 8 O -0.568 6.568 9 N -0.699 5.699 10 C 0.157 3.843 11 H 0.081 0.919 12 C -0.122 4.122 13 C -0.103 4.103 14 C -0.128 4.128 15 C 0.178 3.822 16 H 0.044 0.956 17 N -0.737 5.737 18 C -0.235 4.235 19 H 0.076 0.924 20 C -0.075 4.075 21 N -0.970 5.970 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.300 1.300 25 H -0.279 1.279 26 C -0.121 4.121 27 C 0.338 3.662 28 O -0.492 6.492 29 N -0.533 5.533 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.184 0.816 34 H 0.089 0.911 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.407 0.593 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.063 0.937 42 H 0.042 0.958 43 H 0.048 0.952 44 H 0.372 0.628 45 H 0.249 0.751 46 H 0.062 0.938 47 H 0.078 0.922 48 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.755 9.804 -15.840 23.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.021 3.979 3 C -0.197 4.197 4 C 0.000 4.000 5 C -0.180 4.180 6 C -0.231 4.231 7 C 0.370 3.630 8 O -0.447 6.447 9 N -0.351 5.351 10 C 0.053 3.947 11 H 0.099 0.901 12 C -0.160 4.160 13 C -0.142 4.142 14 C -0.168 4.168 15 C 0.070 3.930 16 H 0.062 0.938 17 N -0.376 5.376 18 C -0.366 4.366 19 H 0.094 0.906 20 C -0.267 4.267 21 N -0.621 5.621 22 Si 0.796 3.204 23 H -0.204 1.204 24 H -0.226 1.226 25 H -0.205 1.205 26 C -0.160 4.160 27 C 0.159 3.841 28 O -0.302 6.302 29 N -0.253 5.253 30 H 0.114 0.886 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.201 0.799 34 H 0.107 0.893 35 H 0.128 0.872 36 H 0.084 0.916 37 H 0.244 0.756 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.082 0.918 42 H 0.060 0.940 43 H 0.066 0.934 44 H 0.203 0.797 45 H 0.058 0.942 46 H 0.081 0.919 47 H 0.097 0.903 48 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -14.865 9.068 -17.033 24.359 hybrid contribution 0.712 -0.126 1.997 2.124 sum -14.153 8.942 -15.037 22.503 Atomic orbital electron populations 1.20930 0.85619 1.04962 1.04666 1.21898 0.98693 0.86827 0.90447 1.22186 0.93019 1.00775 1.03697 1.20601 0.94648 0.93994 0.90722 1.21033 1.00013 0.92798 1.04186 1.20854 0.94161 0.95147 1.12893 1.17895 0.86429 0.74904 0.83757 1.90773 1.70091 1.51221 1.32644 1.46155 1.07584 1.73259 1.08069 1.20903 0.78823 0.97402 0.97585 0.90102 1.21861 1.01383 0.94338 0.98448 1.21418 1.00834 0.98798 0.93112 1.22107 1.00230 0.97640 0.96834 1.20355 0.96327 0.91549 0.84756 0.93818 1.42629 1.32822 1.58566 1.03621 1.19551 1.06825 1.23369 0.86899 0.90573 1.25484 0.99288 1.01009 1.00948 1.69803 1.27010 1.38450 1.26828 0.85316 0.77943 0.77504 0.79644 1.20429 1.22611 1.20494 1.21970 1.01964 0.99050 0.92982 1.19160 0.86867 0.84556 0.93543 1.84682 1.76825 1.33067 1.35612 1.67098 1.08914 1.32124 1.17213 0.88554 0.87347 0.90832 0.79894 0.89294 0.87210 0.91625 0.75622 0.90195 0.91679 0.91022 0.91841 0.93955 0.93355 0.79656 0.94204 0.91931 0.90304 0.72063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 10.16 71.24 0.72 -0.34 16 2 C 0.16 2.86 6.78 42.58 0.29 3.15 16 3 C -0.18 -2.61 9.41 22.32 0.21 -2.40 16 4 C 0.01 0.16 5.95 -19.42 -0.12 0.04 16 5 C -0.12 -1.79 9.69 71.23 0.69 -1.10 16 6 C -0.22 -5.61 5.66 -19.91 -0.11 -5.72 16 7 C 0.58 16.24 5.39 86.69 0.47 16.71 16 8 O -0.57 -19.95 16.77 -4.00 -0.07 -20.01 16 9 N -0.70 -17.19 4.23 -445.71 -1.88 -19.08 16 10 C 0.16 4.05 2.78 44.99 0.13 4.18 16 11 H 0.08 2.24 7.58 -2.39 -0.02 2.22 16 12 C -0.12 -2.84 5.60 30.60 0.17 -2.67 16 13 C -0.10 -2.44 5.77 30.59 0.18 -2.27 16 14 C -0.13 -4.04 5.50 30.59 0.17 -3.87 16 15 C 0.18 6.21 2.60 44.99 0.12 6.33 16 16 H 0.04 1.50 6.44 -2.39 -0.02 1.48 16 17 N -0.74 -34.70 5.12 -322.93 -1.65 -36.35 16 18 C -0.23 -12.32 9.93 84.03 0.83 -11.49 16 19 H 0.08 3.81 7.83 -2.91 -0.02 3.78 16 20 C -0.08 -4.17 5.50 84.86 0.47 -3.70 16 21 N -0.97 -58.03 13.06 21.65 0.28 -57.74 16 22 Si 0.97 44.75 29.55 68.60 2.03 46.78 16 23 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 24 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 25 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 26 C -0.12 -3.57 5.08 30.59 0.16 -3.42 16 27 C 0.34 9.03 7.77 85.13 0.66 9.69 16 28 O -0.49 -13.07 13.01 -87.21 -1.13 -14.20 16 29 N -0.53 -13.35 10.28 -296.05 -3.04 -16.39 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.11 0.48 8.07 -2.39 -0.02 0.46 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.18 1.17 8.06 -2.92 -0.02 1.14 16 34 H 0.09 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.11 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.06 1.12 6.85 -2.39 -0.02 1.10 16 37 H 0.41 9.51 6.85 -92.70 -0.64 8.88 16 38 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.06 1.41 7.27 -2.39 -0.02 1.39 16 42 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.37 19.15 7.80 -92.71 -0.72 18.43 16 45 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 46 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 47 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 48 H 0.42 7.59 9.06 -74.06 -0.67 6.92 16 Total: -1.00 -73.81 390.54 -1.47 -75.28 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -1.03 Total: 38.60 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: 5.03 Total: 3.12 kcal Atomic # 7 Polarization: -123.27 SS G_CDS: -6.30 Total: -129.56 kcal Atomic # 8 Polarization: -33.01 SS G_CDS: -1.20 Total: -34.21 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -73.81 -1.47 -75.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981257425.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.206 kcal (2) G-P(sol) polarization free energy of solvation -73.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds