Wall clock time and date at job start Tue Mar 31 2020 18:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40199 * 120.36747 * 2 1 4 4 C 1.35349 * 119.94852 * 179.97438 * 3 2 1 5 5 N 1.35756 * 120.70451 * 359.97438 * 4 3 2 6 6 C 1.46498 * 119.62761 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47460 * 89.99747 * 6 5 4 8 8 O 1.21283 * 119.99466 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00351 * 180.02562 * 7 6 5 10 10 C 1.46491 * 119.99958 * 179.97438 * 9 7 6 11 11 H 1.08991 * 109.47703 * 34.99644 * 10 9 7 12 12 C 1.53001 * 109.47219 * 274.99376 * 10 9 7 13 13 C 1.52996 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47220 * 60.00418 * 13 12 10 15 15 C 1.53008 * 109.47074 * 300.00109 * 14 13 12 16 16 H 1.08999 * 109.47058 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47014 * 299.99808 * 15 14 13 18 18 C 1.36939 * 119.99933 * 275.27473 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 C 1.52999 * 109.46675 * 59.99923 * 15 14 13 27 27 C 1.34669 * 120.75028 * 0.29193 * 5 4 3 28 28 O 1.22058 * 119.98296 * 179.70853 * 27 5 4 29 29 C 1.36406 * 120.36868 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47189 * 90.00304 * 1 2 3 31 31 H 1.09005 * 109.46849 * 210.00334 * 1 2 3 32 32 H 1.08997 * 109.46853 * 329.99526 * 1 2 3 33 33 H 1.07999 * 120.02272 * 359.95734 * 3 2 1 34 34 H 1.08003 * 119.64763 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.46919 * 329.99677 * 6 5 4 36 36 H 1.09004 * 109.47354 * 209.99773 * 6 5 4 37 37 H 0.97000 * 119.99341 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.47539 * 300.00558 * 12 10 9 39 39 H 1.09006 * 109.47137 * 60.00177 * 12 10 9 40 40 H 1.08997 * 109.47425 * 180.02562 * 13 12 10 41 41 H 1.08996 * 109.47216 * 300.00101 * 13 12 10 42 42 H 1.08995 * 109.47753 * 179.97438 * 14 13 12 43 43 H 1.09005 * 109.47067 * 59.99557 * 14 13 12 44 44 H 0.97001 * 119.99790 * 94.99446 * 17 15 14 45 45 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 46 46 H 1.08991 * 109.47925 * 60.00288 * 26 15 14 47 47 H 1.09009 * 109.46506 * 180.02562 * 26 15 14 48 48 H 1.07993 * 120.34464 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0275 0.0016 6 6 5.7187 0.0443 0.0027 7 6 6.2200 0.0507 1.4239 8 8 5.4312 0.0426 2.3451 9 7 7.5448 0.0666 1.6712 10 6 8.0320 0.0735 3.0527 11 1 7.3661 -0.5233 3.6758 12 6 8.0662 1.5114 3.5743 13 6 8.5757 1.5187 5.0169 14 6 9.9854 0.9259 5.0630 15 6 9.9513 -0.5121 4.5414 16 1 10.9557 -0.9343 4.5738 17 7 9.0566 -1.3144 5.3792 18 6 9.5246 -1.8786 6.5359 19 1 10.5544 -1.7357 6.8282 20 6 8.6753 -2.6339 7.3328 21 7 9.1253 -3.1765 8.4443 22 14 6.8943 -2.8814 6.8270 23 1 6.7834 -4.0997 5.9851 24 1 6.0526 -3.0398 8.0402 25 1 6.4307 -1.7015 6.0536 26 6 9.4418 -0.5192 3.0987 27 6 3.6017 -1.1508 -0.0038 28 8 4.2313 -2.1964 -0.0081 29 6 2.1966 -1.1769 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6821 2.1486 -0.0007 34 1 4.1103 2.1344 0.0001 35 1 6.0722 0.9381 -0.5113 36 1 6.0927 -0.8417 -0.5104 37 1 8.1756 0.0735 0.9343 38 1 8.7323 2.1083 2.9511 39 1 7.0620 1.9340 3.5411 40 1 8.5996 2.5430 5.3887 41 1 7.9100 0.9218 5.6403 42 1 10.3486 0.9314 6.0906 43 1 10.6511 1.5228 4.4395 44 1 8.1316 -1.4426 5.1167 45 1 8.5320 -3.7047 9.0010 46 1 10.1074 0.0776 2.4753 47 1 9.4171 -1.5438 2.7272 48 1 1.6683 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981357009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:51 Heat of formation + Delta-G solvation = -30.877837 kcal Electronic energy + Delta-G solvation = -29176.838065 eV Core-core repulsion = 25232.189940 eV Total energy + Delta-G solvation = -3944.648124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -41.70507 -39.90327 -38.17746 -37.20264 -35.51196 -34.66236 -33.14723 -31.21528 -30.94290 -29.92847 -29.26671 -28.53543 -26.89717 -23.95358 -23.41415 -22.46421 -21.99297 -21.58783 -20.64376 -18.81767 -17.85062 -17.78656 -17.72020 -17.43122 -16.25885 -15.94618 -15.49970 -15.27380 -14.64686 -14.56295 -14.46546 -14.34116 -13.96336 -13.92547 -13.77153 -13.55673 -13.06400 -12.76658 -12.72912 -12.53582 -12.31252 -12.24380 -12.17116 -12.01474 -11.88640 -11.62634 -11.06948 -10.86705 -10.75981 -10.47632 -10.33335 -10.20906 -10.15056 -10.09808 -9.91578 -9.57716 -9.51558 -9.05969 -8.82747 -8.18244 -7.23072 -5.73454 -3.08594 0.58850 1.67505 2.22011 2.44071 3.03761 3.45628 3.50869 3.51022 3.55320 4.19432 4.29469 4.41244 4.49972 4.64844 4.70229 4.78329 4.92830 4.95322 5.03727 5.07585 5.20604 5.27388 5.32139 5.40609 5.50847 5.53453 5.57428 5.67223 5.69472 5.74710 5.81808 5.93698 5.95903 6.02200 6.12738 6.19286 6.27175 6.28883 6.37933 6.50627 6.66198 6.72435 6.83471 6.88014 6.97107 7.36338 7.87228 8.02551 8.07984 8.45790 9.24283 9.97492 10.16312 11.44811 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.003205 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.942880 B = 8734.910524 C = 9855.594283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.014 3.986 3 C -0.229 4.229 4 C 0.144 3.856 5 N -0.482 5.482 6 C 0.070 3.930 7 C 0.497 3.503 8 O -0.521 6.521 9 N -0.720 5.720 10 C 0.144 3.856 11 H 0.090 0.910 12 C -0.120 4.120 13 C -0.111 4.111 14 C -0.136 4.136 15 C 0.185 3.815 16 H 0.061 0.939 17 N -0.746 5.746 18 C -0.242 4.242 19 H 0.091 0.909 20 C 0.008 3.992 21 N -0.934 5.934 22 Si 0.876 3.124 23 H -0.284 1.284 24 H -0.290 1.290 25 H -0.275 1.275 26 C -0.131 4.131 27 C 0.521 3.479 28 O -0.549 6.549 29 C -0.246 4.246 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.145 0.855 34 H 0.160 0.840 35 H 0.121 0.879 36 H 0.130 0.870 37 H 0.398 0.602 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.067 0.933 43 H 0.047 0.953 44 H 0.361 0.639 45 H 0.259 0.741 46 H 0.067 0.933 47 H 0.070 0.930 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.458 14.973 -23.839 30.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.010 3.990 3 C -0.253 4.253 4 C 0.017 3.983 5 N -0.193 5.193 6 C -0.055 4.055 7 C 0.280 3.720 8 O -0.396 6.396 9 N -0.371 5.371 10 C 0.040 3.960 11 H 0.108 0.892 12 C -0.159 4.159 13 C -0.149 4.149 14 C -0.176 4.176 15 C 0.075 3.925 16 H 0.079 0.921 17 N -0.390 5.390 18 C -0.372 4.372 19 H 0.109 0.891 20 C -0.188 4.188 21 N -0.582 5.582 22 Si 0.706 3.294 23 H -0.211 1.211 24 H -0.217 1.217 25 H -0.202 1.202 26 C -0.170 4.170 27 C 0.324 3.676 28 O -0.431 6.431 29 C -0.268 4.268 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.232 0.768 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.091 0.909 42 H 0.086 0.914 43 H 0.066 0.934 44 H 0.195 0.805 45 H 0.069 0.931 46 H 0.086 0.914 47 H 0.089 0.911 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.458 14.169 -22.963 28.938 hybrid contribution -1.025 -0.111 -0.467 1.131 sum -11.482 14.058 -23.430 29.638 Atomic orbital electron populations 1.20925 0.90349 1.03671 1.02980 1.20205 0.96794 0.92655 0.89315 1.20512 0.92342 0.98913 1.13500 1.21857 0.93627 0.89419 0.93364 1.45025 1.07124 1.07318 1.59809 1.21808 0.79930 1.07209 0.96601 1.20666 0.83254 0.77034 0.91015 1.90796 1.55069 1.48116 1.45642 1.46073 1.06220 1.75122 1.09680 1.21107 0.96436 0.97349 0.81106 0.89153 1.21853 1.00783 0.95667 0.97558 1.21370 0.98202 1.00175 0.95162 1.22160 0.95628 0.97963 1.01840 1.20133 0.94595 0.90544 0.87268 0.92073 1.42888 1.09494 1.60856 1.25781 1.19054 0.97316 1.24154 0.96671 0.89118 1.24619 0.97416 0.99954 0.96822 1.69689 1.35203 1.38769 1.14526 0.86692 0.86675 0.78387 0.77633 1.21052 1.21669 1.20152 1.22132 0.94389 1.01042 0.99461 1.17106 0.89400 0.82433 0.78694 1.90974 1.69084 1.30233 1.52771 1.21932 0.92238 0.99635 1.12983 0.90145 0.90770 0.90745 0.83740 0.82237 0.86147 0.85250 0.76768 0.92335 0.92404 0.92844 0.90926 0.91411 0.93447 0.80503 0.93087 0.91407 0.91145 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.73 10.03 36.01 0.36 -0.37 16 2 C 0.01 0.13 5.89 -104.55 -0.62 -0.49 16 3 C -0.23 -1.76 9.71 -39.88 -0.39 -2.15 16 4 C 0.14 1.17 10.28 -16.85 -0.17 0.99 16 5 N -0.48 -5.42 2.07 -121.06 -0.25 -5.67 16 6 C 0.07 0.65 5.82 -5.19 -0.03 0.62 16 7 C 0.50 6.69 7.86 -10.98 -0.09 6.60 16 8 O -0.52 -9.78 16.09 5.56 0.09 -9.69 16 9 N -0.72 -8.40 5.08 -53.81 -0.27 -8.67 16 10 C 0.14 2.17 2.28 -67.93 -0.16 2.02 16 11 H 0.09 1.80 5.94 -51.93 -0.31 1.49 16 12 C -0.12 -1.69 5.49 -26.73 -0.15 -1.84 16 13 C -0.11 -1.81 5.77 -26.74 -0.15 -1.96 16 14 C -0.14 -2.25 5.61 -26.73 -0.15 -2.40 16 15 C 0.18 3.39 3.10 -67.93 -0.21 3.18 16 16 H 0.06 1.15 8.08 -51.93 -0.42 0.73 16 17 N -0.75 -17.60 4.08 -53.42 -0.22 -17.82 16 18 C -0.24 -6.84 10.41 -15.06 -0.16 -7.00 16 19 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 20 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 21 N -0.93 -29.91 13.97 55.49 0.78 -29.14 16 22 Si 0.88 23.63 27.74 -169.99 -4.71 18.91 16 23 H -0.28 -7.73 7.11 56.52 0.40 -7.32 16 24 H -0.29 -7.89 7.11 56.52 0.40 -7.48 16 25 H -0.28 -7.26 6.52 56.52 0.37 -6.89 16 26 C -0.13 -1.91 5.07 -26.73 -0.14 -2.04 16 27 C 0.52 7.65 7.40 -15.44 -0.11 7.54 16 28 O -0.55 -10.19 16.63 4.87 0.08 -10.11 16 29 C -0.25 -2.98 9.65 -39.38 -0.38 -3.36 16 30 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 32 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 33 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 34 H 0.16 0.70 8.04 -52.48 -0.42 0.27 16 35 H 0.12 0.49 8.01 -51.93 -0.42 0.08 16 36 H 0.13 1.19 7.38 -51.93 -0.38 0.81 16 37 H 0.40 3.05 8.60 -40.82 -0.35 2.70 16 38 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.44 7.60 -51.93 -0.39 1.04 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.36 8.78 3.92 -40.82 -0.16 8.62 16 45 H 0.26 7.96 8.31 -40.82 -0.34 7.62 16 46 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.07 8.14 -51.92 -0.42 0.64 16 48 H 0.15 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -39.61 387.66 -8.81 -48.43 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -7.52 Total: 8.45 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -2.63 Total: -0.52 kcal Atomic # 7 Polarization: -61.34 SS G_CDS: 0.03 Total: -61.31 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: 0.17 Total: -19.81 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.71 Total: 18.91 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -39.61 -8.81 -48.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981357009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.551 kcal (2) G-P(sol) polarization free energy of solvation -39.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds