Wall clock time and date at job start Tue Mar 31 2020 18:09:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40199 * 120.36747 * 2 1 4 4 C 1.35349 * 119.94852 * 179.97438 * 3 2 1 5 5 N 1.35756 * 120.70451 * 359.97438 * 4 3 2 6 6 C 1.46498 * 119.62761 * 180.02562 * 5 4 3 7 7 C 1.50702 * 109.47460 * 89.99747 * 6 5 4 8 8 O 1.21283 * 119.99466 * 359.97438 * 7 6 5 9 9 N 1.34778 * 120.00351 * 180.02562 * 7 6 5 10 10 C 1.46491 * 119.99958 * 179.97438 * 9 7 6 11 11 H 1.08991 * 109.47703 * 34.99644 * 10 9 7 12 12 C 1.53001 * 109.47219 * 274.99376 * 10 9 7 13 13 C 1.52996 * 109.47349 * 180.02562 * 12 10 9 14 14 C 1.52996 * 109.47220 * 60.00418 * 13 12 10 15 15 C 1.53008 * 109.47074 * 300.00109 * 14 13 12 16 16 H 1.08999 * 109.47058 * 179.97438 * 15 14 13 17 17 N 1.46499 * 109.47014 * 299.99808 * 15 14 13 18 18 C 1.36939 * 119.99933 * 275.27473 * 17 15 14 19 19 H 1.08001 * 119.99700 * 359.72658 * 18 17 15 20 20 C 1.38810 * 120.00095 * 179.71972 * 18 17 15 21 21 N 1.31612 * 120.00054 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 119.99751 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47517 * 89.99708 * 22 20 18 24 24 H 1.48502 * 109.46736 * 209.99481 * 22 20 18 25 25 H 1.48496 * 109.47375 * 329.99177 * 22 20 18 26 26 C 1.52999 * 109.46675 * 59.99923 * 15 14 13 27 27 C 1.34669 * 120.75028 * 0.29193 * 5 4 3 28 28 O 1.22058 * 119.98296 * 179.70853 * 27 5 4 29 29 C 1.36406 * 120.36868 * 179.97438 * 2 1 3 30 30 H 1.08995 * 109.47189 * 90.00304 * 1 2 3 31 31 H 1.09005 * 109.46849 * 210.00334 * 1 2 3 32 32 H 1.08997 * 109.46853 * 329.99526 * 1 2 3 33 33 H 1.07999 * 120.02272 * 359.95734 * 3 2 1 34 34 H 1.08003 * 119.64763 * 179.97438 * 4 3 2 35 35 H 1.08997 * 109.46919 * 329.99677 * 6 5 4 36 36 H 1.09004 * 109.47354 * 209.99773 * 6 5 4 37 37 H 0.97000 * 119.99341 * 359.97438 * 9 7 6 38 38 H 1.09005 * 109.47539 * 300.00558 * 12 10 9 39 39 H 1.09006 * 109.47137 * 60.00177 * 12 10 9 40 40 H 1.08997 * 109.47425 * 180.02562 * 13 12 10 41 41 H 1.08996 * 109.47216 * 300.00101 * 13 12 10 42 42 H 1.08995 * 109.47753 * 179.97438 * 14 13 12 43 43 H 1.09005 * 109.47067 * 59.99557 * 14 13 12 44 44 H 0.97001 * 119.99790 * 94.99446 * 17 15 14 45 45 H 0.96998 * 120.00381 * 180.02562 * 21 20 18 46 46 H 1.08991 * 109.47925 * 60.00288 * 26 15 14 47 47 H 1.09009 * 109.46506 * 180.02562 * 26 15 14 48 48 H 1.07993 * 120.34464 * 359.97438 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2158 1.2096 0.0000 4 6 3.5692 1.1997 0.0005 5 7 4.2538 0.0275 0.0016 6 6 5.7187 0.0443 0.0027 7 6 6.2200 0.0507 1.4239 8 8 5.4312 0.0426 2.3451 9 7 7.5448 0.0666 1.6712 10 6 8.0320 0.0735 3.0527 11 1 7.3661 -0.5233 3.6758 12 6 8.0662 1.5114 3.5743 13 6 8.5757 1.5187 5.0169 14 6 9.9854 0.9259 5.0630 15 6 9.9513 -0.5121 4.5414 16 1 10.9557 -0.9343 4.5738 17 7 9.0566 -1.3144 5.3792 18 6 9.5246 -1.8786 6.5359 19 1 10.5544 -1.7357 6.8282 20 6 8.6753 -2.6339 7.3328 21 7 9.1253 -3.1765 8.4443 22 14 6.8943 -2.8814 6.8270 23 1 6.7834 -4.0997 5.9851 24 1 6.0526 -3.0398 8.0402 25 1 6.4307 -1.7015 6.0536 26 6 9.4418 -0.5192 3.0987 27 6 3.6017 -1.1508 -0.0038 28 8 4.2313 -2.1964 -0.0081 29 6 2.1966 -1.1769 0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8899 0.5139 33 1 1.6821 2.1486 -0.0007 34 1 4.1103 2.1344 0.0001 35 1 6.0722 0.9381 -0.5113 36 1 6.0927 -0.8417 -0.5104 37 1 8.1756 0.0735 0.9343 38 1 8.7323 2.1083 2.9511 39 1 7.0620 1.9340 3.5411 40 1 8.5996 2.5430 5.3887 41 1 7.9100 0.9218 5.6403 42 1 10.3486 0.9314 6.0906 43 1 10.6511 1.5228 4.4395 44 1 8.1316 -1.4426 5.1167 45 1 8.5320 -3.7047 9.0010 46 1 10.1074 0.0776 2.4753 47 1 9.4171 -1.5438 2.7272 48 1 1.6683 -2.1188 0.0014 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981357009.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:49 Heat of formation + Delta-G solvation = -60.054938 kcal Electronic energy + Delta-G solvation = -29178.103279 eV Core-core repulsion = 25232.189940 eV Total energy + Delta-G solvation = -3945.913339 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -42.55854 -41.02761 -39.47835 -38.14476 -36.38261 -36.06270 -34.82049 -33.09813 -31.75588 -30.90670 -30.48323 -29.81700 -27.67786 -25.41937 -24.68713 -23.55994 -23.36553 -22.53102 -21.71238 -20.17448 -19.85201 -18.71568 -18.56404 -18.44714 -17.19984 -17.03178 -16.62954 -16.47402 -16.27901 -15.86245 -15.73096 -15.21678 -15.18786 -15.13800 -14.88464 -14.64022 -14.20291 -14.15648 -13.92873 -13.62280 -13.50031 -13.35439 -13.08257 -13.04791 -12.98328 -12.89729 -12.53798 -12.50228 -12.26749 -12.20369 -11.90455 -11.65639 -11.60596 -11.35984 -11.17324 -11.07713 -10.93436 -10.57173 -10.12682 -9.31234 -9.01844 -8.08644 -5.36904 -0.15214 0.88640 1.24433 1.29069 1.32326 1.41691 1.46830 2.11374 2.37726 2.66344 3.24259 3.53797 3.57430 3.64062 3.70942 3.82149 3.85126 3.90304 4.05600 4.10914 4.15218 4.29625 4.31171 4.37319 4.39000 4.50954 4.63243 4.72247 4.75550 4.77522 4.79691 4.86543 4.95727 5.07070 5.07867 5.11443 5.21281 5.25655 5.37399 5.40189 5.45907 5.55099 5.59537 5.63642 5.77849 6.01962 6.18411 6.44548 6.93512 7.04567 7.15725 7.84129 7.98828 9.13714 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013439 B = 0.003205 C = 0.002840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2082.942880 B = 8734.910524 C = 9855.594283 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.034 3.966 3 C -0.233 4.233 4 C 0.142 3.858 5 N -0.484 5.484 6 C 0.074 3.926 7 C 0.492 3.508 8 O -0.582 6.582 9 N -0.701 5.701 10 C 0.146 3.854 11 H 0.034 0.966 12 C -0.107 4.107 13 C -0.111 4.111 14 C -0.127 4.127 15 C 0.169 3.831 16 H 0.058 0.942 17 N -0.753 5.753 18 C -0.212 4.212 19 H 0.070 0.930 20 C -0.055 4.055 21 N -0.980 5.980 22 Si 0.932 3.068 23 H -0.288 1.288 24 H -0.292 1.292 25 H -0.274 1.274 26 C -0.119 4.119 27 C 0.500 3.500 28 O -0.614 6.614 29 C -0.298 4.298 30 H 0.101 0.899 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.184 0.816 34 H 0.208 0.792 35 H 0.186 0.814 36 H 0.128 0.872 37 H 0.423 0.577 38 H 0.102 0.898 39 H 0.048 0.952 40 H 0.073 0.927 41 H 0.024 0.976 42 H 0.037 0.963 43 H 0.093 0.907 44 H 0.357 0.643 45 H 0.256 0.744 46 H 0.120 0.880 47 H 0.061 0.939 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.488 19.278 -27.418 35.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.029 3.971 3 C -0.255 4.255 4 C 0.017 3.983 5 N -0.193 5.193 6 C -0.050 4.050 7 C 0.278 3.722 8 O -0.462 6.462 9 N -0.354 5.354 10 C 0.041 3.959 11 H 0.052 0.948 12 C -0.145 4.145 13 C -0.149 4.149 14 C -0.167 4.167 15 C 0.061 3.939 16 H 0.076 0.924 17 N -0.396 5.396 18 C -0.343 4.343 19 H 0.088 0.912 20 C -0.246 4.246 21 N -0.632 5.632 22 Si 0.762 3.238 23 H -0.215 1.215 24 H -0.219 1.219 25 H -0.200 1.200 26 C -0.157 4.157 27 C 0.306 3.694 28 O -0.502 6.502 29 C -0.320 4.320 30 H 0.119 0.881 31 H 0.087 0.913 32 H 0.113 0.887 33 H 0.202 0.798 34 H 0.225 0.775 35 H 0.203 0.797 36 H 0.146 0.854 37 H 0.261 0.739 38 H 0.120 0.880 39 H 0.067 0.933 40 H 0.092 0.908 41 H 0.043 0.957 42 H 0.056 0.944 43 H 0.112 0.888 44 H 0.191 0.809 45 H 0.065 0.935 46 H 0.139 0.861 47 H 0.080 0.920 48 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.456 18.555 -26.633 34.101 hybrid contribution -0.974 -1.281 0.599 1.717 sum -11.430 17.273 -26.033 33.268 Atomic orbital electron populations 1.21043 0.88065 1.04428 1.04433 1.20660 0.98527 0.92163 0.85705 1.21081 0.92623 0.99676 1.12118 1.22753 0.94383 0.89724 0.91474 1.45081 1.08172 1.07370 1.58646 1.22074 0.78878 1.10228 0.93862 1.21426 0.83107 0.75515 0.92176 1.90778 1.56614 1.50924 1.47857 1.45797 1.06393 1.74103 1.09059 1.20826 0.95480 0.97353 0.82206 0.94816 1.21746 1.01185 0.95195 0.96383 1.21344 0.96950 1.00327 0.96279 1.22036 0.96657 0.97086 1.00878 1.20528 0.93507 0.90792 0.89032 0.92400 1.43032 1.10154 1.61375 1.25065 1.19116 0.96068 1.21828 0.97298 0.91232 1.25177 1.00590 1.01408 0.97468 1.69810 1.36312 1.40959 1.16104 0.85775 0.83153 0.77955 0.76881 1.21461 1.21871 1.19977 1.22019 0.94822 1.01750 0.97126 1.17513 0.90316 0.82830 0.78757 1.90909 1.70259 1.32413 1.56626 1.21895 0.91767 1.00802 1.17486 0.88114 0.91304 0.88682 0.79839 0.77502 0.79653 0.85443 0.73886 0.87995 0.93323 0.90812 0.95726 0.94431 0.88815 0.80927 0.93456 0.86142 0.91986 0.84682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 10.03 71.24 0.71 -0.48 16 2 C 0.03 0.56 5.89 -19.82 -0.12 0.44 16 3 C -0.23 -2.73 9.71 22.08 0.21 -2.52 16 4 C 0.14 1.77 10.28 83.42 0.86 2.63 16 5 N -0.48 -10.11 2.07 -655.06 -1.36 -11.46 16 6 C 0.07 1.16 5.82 85.63 0.50 1.66 16 7 C 0.49 12.35 7.86 87.66 0.69 13.04 16 8 O -0.58 -21.93 16.09 -3.04 -0.05 -21.98 16 9 N -0.70 -14.22 5.08 -442.55 -2.25 -16.47 16 10 C 0.15 4.14 2.28 44.99 0.10 4.24 16 11 H 0.03 1.37 5.94 -2.39 -0.01 1.35 16 12 C -0.11 -2.66 5.49 30.59 0.17 -2.49 16 13 C -0.11 -3.41 5.77 30.59 0.18 -3.24 16 14 C -0.13 -3.92 5.61 30.60 0.17 -3.75 16 15 C 0.17 5.97 3.10 44.99 0.14 6.11 16 16 H 0.06 2.09 8.08 -2.39 -0.02 2.07 16 17 N -0.75 -36.11 4.08 -322.93 -1.32 -37.43 16 18 C -0.21 -12.32 10.41 84.03 0.87 -11.45 16 19 H 0.07 4.30 8.06 -2.91 -0.02 4.28 16 20 C -0.05 -3.41 5.50 84.86 0.47 -2.94 16 21 N -0.98 -65.16 13.97 21.65 0.30 -64.86 16 22 Si 0.93 51.26 27.74 68.60 1.90 53.16 16 23 H -0.29 -15.83 7.11 99.48 0.71 -15.12 16 24 H -0.29 -16.01 7.11 99.48 0.71 -15.30 16 25 H -0.27 -14.78 6.52 99.48 0.65 -14.13 16 26 C -0.12 -3.08 5.07 30.60 0.16 -2.92 16 27 C 0.50 15.30 7.40 84.82 0.63 15.93 16 28 O -0.61 -24.57 16.63 -5.50 -0.09 -24.66 16 29 C -0.30 -7.60 9.65 22.40 0.22 -7.39 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.77 8.09 -2.38 -0.02 0.75 16 32 H 0.09 0.57 8.10 -2.39 -0.02 0.55 16 33 H 0.18 0.70 8.06 -2.91 -0.02 0.68 16 34 H 0.21 0.50 8.04 -2.91 -0.02 0.47 16 35 H 0.19 0.38 8.01 -2.39 -0.02 0.36 16 36 H 0.13 2.14 7.38 -2.38 -0.02 2.12 16 37 H 0.42 4.45 8.60 -92.71 -0.80 3.65 16 38 H 0.10 1.72 8.14 -2.38 -0.02 1.70 16 39 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 40 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 41 H 0.02 0.98 7.60 -2.39 -0.02 0.96 16 42 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 44 H 0.36 17.86 3.92 -92.71 -0.36 17.50 16 45 H 0.26 16.38 8.31 -92.71 -0.77 15.61 16 46 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 48 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 Total: -1.00 -97.79 387.66 2.85 -94.94 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: -0.25 Total: 21.87 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 5.96 Total: 6.88 kcal Atomic # 7 Polarization: -125.59 SS G_CDS: -4.62 Total: -130.21 kcal Atomic # 8 Polarization: -46.50 SS G_CDS: -0.14 Total: -46.64 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 1.90 Total: 53.16 kcal Total: -97.79 2.85 -94.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981357009.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.880 kcal (2) G-P(sol) polarization free energy of solvation -97.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds