Wall clock time and date at job start Tue Mar 31 2020 17:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38001 * 120.82266 * 2 1 4 4 C 1.39123 * 119.26512 * 180.22924 * 3 2 1 5 5 O 1.35500 * 119.52468 * 179.74801 * 4 3 2 6 6 N 1.32439 * 120.95001 * 359.76654 * 4 3 2 7 7 C 1.31632 * 121.79925 * 0.02562 * 6 4 3 8 8 C 1.50708 * 119.68801 * 179.97438 * 7 6 4 9 9 C 1.39564 * 120.62861 * 359.97152 * 7 6 4 10 10 C 1.47617 * 120.49970 * 180.02562 * 9 7 6 11 11 O 1.21579 * 120.00259 * 90.00297 * 10 9 7 12 12 N 1.34782 * 119.99784 * 269.99754 * 10 9 7 13 13 C 1.46500 * 119.99996 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47042 * 35.00118 * 13 12 10 15 15 C 1.53001 * 109.46826 * 275.00392 * 13 12 10 16 16 C 1.53002 * 109.46637 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46977 * 59.99946 * 16 15 13 18 18 C 1.52997 * 109.47127 * 299.99541 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 20 20 N 1.46505 * 109.47212 * 300.00138 * 18 17 16 21 21 C 1.36931 * 119.99990 * 275.00043 * 20 18 17 22 22 H 1.08004 * 120.00112 * 359.97438 * 21 20 18 23 23 C 1.38813 * 120.00062 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99605 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47337 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47162 * 120.00013 * 25 23 21 28 28 H 1.48505 * 109.47103 * 239.99925 * 25 23 21 29 29 C 1.52996 * 109.46993 * 155.00206 * 13 12 10 30 30 H 1.08999 * 109.47588 * 270.25220 * 1 2 3 31 31 H 1.09006 * 109.47070 * 30.25249 * 1 2 3 32 32 H 1.09000 * 109.47417 * 150.24536 * 1 2 3 33 33 H 1.07993 * 120.36373 * 359.97438 * 3 2 1 34 34 H 0.96709 * 113.99428 * 270.02154 * 5 4 3 35 35 H 1.09004 * 109.46372 * 269.97516 * 8 7 6 36 36 H 1.08997 * 109.46819 * 29.97206 * 8 7 6 37 37 H 1.08996 * 109.47134 * 149.97432 * 8 7 6 38 38 H 0.97002 * 119.99974 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.46778 * 299.99700 * 15 13 12 40 40 H 1.08992 * 109.47514 * 59.99987 * 15 13 12 41 41 H 1.09000 * 109.46986 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47662 * 299.99908 * 16 15 13 43 43 H 1.08998 * 109.46505 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.46884 * 60.00293 * 17 16 15 45 45 H 0.97005 * 119.99239 * 94.99888 * 20 18 17 46 46 H 0.96998 * 119.99451 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47452 * 59.99785 * 29 13 12 48 48 H 1.09000 * 109.47054 * 299.99945 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0049 5 8 4.3043 2.3077 -0.0101 6 7 4.2548 -0.0066 -0.0048 7 6 3.6205 -1.1600 -0.0007 8 6 4.4080 -2.4450 -0.0015 9 6 2.2255 -1.2044 0.0043 10 6 1.5171 -2.4995 0.0095 11 8 1.2291 -3.0307 1.0645 12 7 1.1895 -3.0930 -1.1554 13 6 0.4860 -4.3780 -1.1504 14 1 -0.2027 -4.4118 -0.3061 15 6 1.5020 -5.5151 -1.0257 16 6 0.7671 -6.8571 -1.0198 17 6 -0.0174 -7.0147 -2.3239 18 6 -1.0333 -5.8775 -2.4486 19 1 -1.5925 -5.9901 -3.3774 20 7 -1.9586 -5.9227 -1.3136 21 6 -3.0596 -6.7355 -1.3598 22 1 -3.2462 -7.3430 -2.2331 23 6 -3.9366 -6.7780 -0.2846 24 7 -3.7095 -6.0372 0.7795 25 14 -5.4382 -7.8873 -0.3473 26 1 -5.4649 -8.6114 -1.6434 27 1 -5.3764 -8.8673 0.7667 28 1 -6.6674 -7.0644 -0.2151 29 6 -0.2980 -4.5352 -2.4548 30 1 -0.3634 0.0045 1.0276 31 1 -0.3633 0.8878 -0.5178 32 1 -0.3634 -0.8922 -0.5100 33 1 1.6936 2.1313 -0.0004 34 1 4.5039 2.6426 -0.8951 35 1 4.5938 -2.7565 -1.0294 36 1 5.3586 -2.2887 0.5083 37 1 3.8411 -3.2189 0.5160 38 1 1.4196 -2.6693 -1.9972 39 1 2.1906 -5.4812 -1.8699 40 1 2.0605 -5.4031 -0.0965 41 1 1.4909 -7.6673 -0.9314 42 1 0.0787 -6.8907 -0.1754 43 1 -0.5405 -7.9709 -2.3198 44 1 0.6711 -6.9812 -3.1683 45 1 -1.7911 -5.3768 -0.5294 46 1 -4.3221 -6.0672 1.5309 47 1 0.3906 -4.5013 -3.2990 48 1 -1.0218 -3.7251 -2.5435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981537875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:08 Heat of formation + Delta-G solvation = -46.858719 kcal Electronic energy + Delta-G solvation = -29351.336778 eV Core-core repulsion = 25405.995670 eV Total energy + Delta-G solvation = -3945.341108 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.17794 -39.67407 -38.14734 -37.27322 -34.57280 -34.48461 -33.07835 -32.04239 -30.94926 -29.36339 -28.30821 -28.20081 -27.61791 -24.15409 -23.62335 -21.99201 -21.84317 -21.56874 -20.52977 -18.92816 -18.61833 -17.59977 -17.42443 -17.28448 -16.19503 -15.86163 -15.06571 -14.66433 -14.47864 -14.39071 -14.20818 -13.93138 -13.67036 -13.58761 -13.54705 -13.42722 -13.13985 -12.93695 -12.58333 -12.36268 -12.31488 -12.15866 -12.05365 -11.89685 -11.78440 -11.41115 -10.92159 -10.84863 -10.74423 -10.34816 -10.20502 -10.10211 -10.07523 -9.83369 -9.76728 -9.54635 -9.45420 -9.07545 -8.94923 -8.78800 -6.94121 -5.74275 -3.03428 0.49272 0.84771 2.57036 2.95317 3.27706 3.34220 3.43874 3.49399 3.51845 4.15933 4.25982 4.56302 4.60226 4.74299 4.91383 5.04724 5.11167 5.18594 5.21287 5.29573 5.33933 5.38017 5.46323 5.59718 5.64496 5.67767 5.68819 5.72261 5.82461 5.85034 5.88302 5.92831 6.06324 6.08461 6.14650 6.17632 6.34590 6.41536 6.59901 6.64525 6.78190 6.83624 7.00681 7.10173 7.10526 7.52181 7.57952 7.72235 8.23649 8.43613 9.54892 10.12170 10.46330 11.47892 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002854 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.267477 B = 9810.041664 C =10646.605864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 C -0.197 4.197 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.193 3.807 8 C -0.113 4.113 9 C -0.189 4.189 10 C 0.568 3.432 11 O -0.517 6.517 12 N -0.716 5.716 13 C 0.144 3.856 14 H 0.101 0.899 15 C -0.120 4.120 16 C -0.110 4.110 17 C -0.135 4.135 18 C 0.179 3.821 19 H 0.051 0.949 20 N -0.721 5.721 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.929 5.929 25 Si 0.904 3.096 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.293 1.293 29 C -0.127 4.127 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.402 0.598 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.396 0.604 39 H 0.055 0.945 40 H 0.059 0.941 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.042 0.958 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.061 0.939 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.678 13.527 -7.705 22.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.150 3.850 5 O -0.288 6.288 6 N -0.228 5.228 7 C 0.055 3.945 8 C -0.170 4.170 9 C -0.194 4.194 10 C 0.352 3.648 11 O -0.392 6.392 12 N -0.366 5.366 13 C 0.041 3.959 14 H 0.119 0.881 15 C -0.159 4.159 16 C -0.148 4.148 17 C -0.176 4.176 18 C 0.069 3.931 19 H 0.069 0.931 20 N -0.364 5.364 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.735 3.265 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.220 1.220 29 C -0.166 4.166 30 H 0.107 0.893 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.164 0.836 34 H 0.260 0.740 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.229 0.771 39 H 0.073 0.927 40 H 0.077 0.923 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.061 0.939 45 H 0.219 0.781 46 H 0.064 0.936 47 H 0.080 0.920 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 16.173 13.050 -6.374 21.737 hybrid contribution -1.417 0.029 -0.517 1.508 sum 14.757 13.078 -6.891 20.888 Atomic orbital electron populations 1.20977 0.88967 1.04106 1.04243 1.20270 0.97145 0.90811 0.91138 1.21879 0.93677 0.99400 1.06812 1.19236 0.87027 0.85008 0.93728 1.84741 1.76040 1.34106 1.33935 1.66980 1.41849 0.97830 1.16160 1.21033 0.89168 0.93122 0.91201 1.20881 1.00611 0.91779 1.03755 1.20806 0.94843 0.94636 1.09138 1.17850 0.78680 0.83680 0.84588 1.90891 1.52883 1.64576 1.30832 1.46235 1.59304 1.23302 1.07755 1.21139 0.93537 0.80702 1.00555 0.88150 1.21847 0.97687 0.95258 1.01102 1.21359 0.98552 0.94774 1.00095 1.22179 0.98086 1.01348 0.95966 1.20163 0.89923 0.90423 0.92622 0.93110 1.42514 1.25461 1.51875 1.16567 1.19258 0.99695 1.17319 1.00703 0.91188 1.24735 0.99290 1.00243 0.96632 1.69676 1.38469 1.43131 1.06490 0.86169 0.83146 0.80031 0.77138 1.20644 1.21946 1.22000 1.22085 0.98742 1.00233 0.95560 0.89272 0.90200 0.90211 0.83619 0.74017 0.89575 0.89674 0.89844 0.77055 0.92671 0.92254 0.93237 0.90312 0.91995 0.93884 0.78052 0.93565 0.92013 0.91416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.28 9.69 36.00 0.35 -0.93 16 2 C 0.01 0.16 5.95 -103.96 -0.62 -0.46 16 3 C -0.20 -1.90 9.73 -39.34 -0.38 -2.28 16 4 C 0.33 3.53 7.74 -16.96 -0.13 3.40 16 5 O -0.48 -4.18 13.55 -18.19 -0.25 -4.43 16 6 N -0.51 -6.26 10.28 -9.20 -0.09 -6.35 16 7 C 0.19 2.34 6.82 -82.18 -0.56 1.78 16 8 C -0.11 -1.15 9.78 36.01 0.35 -0.80 16 9 C -0.19 -2.37 5.65 -104.82 -0.59 -2.97 16 10 C 0.57 8.26 4.29 -12.43 -0.05 8.21 16 11 O -0.52 -9.92 16.76 5.30 0.09 -9.84 16 12 N -0.72 -8.98 5.07 -54.82 -0.28 -9.26 16 13 C 0.14 2.20 2.28 -67.93 -0.15 2.05 16 14 H 0.10 2.00 5.94 -51.93 -0.31 1.69 16 15 C -0.12 -1.77 5.49 -26.73 -0.15 -1.91 16 16 C -0.11 -1.83 5.77 -26.73 -0.15 -1.98 16 17 C -0.14 -2.27 5.61 -26.73 -0.15 -2.42 16 18 C 0.18 3.29 3.10 -67.90 -0.21 3.08 16 19 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 20 N -0.72 -17.14 4.28 -53.40 -0.23 -17.37 16 21 C -0.24 -6.40 9.93 -15.06 -0.15 -6.55 16 22 H 0.07 1.83 7.83 -52.48 -0.41 1.42 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 25 Si 0.90 22.22 29.55 -169.99 -5.02 17.19 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 29 C -0.13 -1.87 5.08 -26.71 -0.14 -2.01 16 30 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.08 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.08 0.91 7.18 -51.93 -0.37 0.53 16 33 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 34 H 0.40 1.32 9.06 45.56 0.41 1.73 16 35 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.08 0.96 7.06 -51.93 -0.37 0.59 16 38 H 0.40 3.81 8.59 -40.82 -0.35 3.46 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.61 7.60 -51.93 -0.39 1.22 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.38 9.88 6.06 -40.82 -0.25 9.63 16 46 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 389.57 15.07 5.87 5.87 Total: -1.00 -34.14 389.57 -8.69 -42.83 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.66 Total: 12.79 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -2.83 Total: -4.26 kcal Atomic # 7 Polarization: -60.28 SS G_CDS: 0.12 Total: -60.15 kcal Atomic # 8 Polarization: -14.11 SS G_CDS: -0.16 Total: -14.27 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.14 -8.69 -42.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.033 kcal (2) G-P(sol) polarization free energy of solvation -34.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds