Wall clock time and date at job start Tue Mar 31 2020 17:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38001 * 120.82266 * 2 1 4 4 C 1.39123 * 119.26512 * 180.22924 * 3 2 1 5 5 O 1.35500 * 119.52468 * 179.74801 * 4 3 2 6 6 N 1.32439 * 120.95001 * 359.76654 * 4 3 2 7 7 C 1.31632 * 121.79925 * 0.02562 * 6 4 3 8 8 C 1.50708 * 119.68801 * 179.97438 * 7 6 4 9 9 C 1.39564 * 120.62861 * 359.97152 * 7 6 4 10 10 C 1.47617 * 120.49970 * 180.02562 * 9 7 6 11 11 O 1.21579 * 120.00259 * 90.00297 * 10 9 7 12 12 N 1.34782 * 119.99784 * 269.99754 * 10 9 7 13 13 C 1.46500 * 119.99996 * 180.02562 * 12 10 9 14 14 H 1.09004 * 109.47042 * 35.00118 * 13 12 10 15 15 C 1.53001 * 109.46826 * 275.00392 * 13 12 10 16 16 C 1.53002 * 109.46637 * 179.97438 * 15 13 12 17 17 C 1.53006 * 109.46977 * 59.99946 * 16 15 13 18 18 C 1.52997 * 109.47127 * 299.99541 * 17 16 15 19 19 H 1.09002 * 109.47153 * 180.02562 * 18 17 16 20 20 N 1.46505 * 109.47212 * 300.00138 * 18 17 16 21 21 C 1.36931 * 119.99990 * 275.00043 * 20 18 17 22 22 H 1.08004 * 120.00112 * 359.97438 * 21 20 18 23 23 C 1.38813 * 120.00062 * 180.02562 * 21 20 18 24 24 N 1.31624 * 119.99605 * 359.97438 * 23 21 20 25 25 Si 1.86796 * 120.00140 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47337 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47162 * 120.00013 * 25 23 21 28 28 H 1.48505 * 109.47103 * 239.99925 * 25 23 21 29 29 C 1.52996 * 109.46993 * 155.00206 * 13 12 10 30 30 H 1.08999 * 109.47588 * 270.25220 * 1 2 3 31 31 H 1.09006 * 109.47070 * 30.25249 * 1 2 3 32 32 H 1.09000 * 109.47417 * 150.24536 * 1 2 3 33 33 H 1.07993 * 120.36373 * 359.97438 * 3 2 1 34 34 H 0.96709 * 113.99428 * 270.02154 * 5 4 3 35 35 H 1.09004 * 109.46372 * 269.97516 * 8 7 6 36 36 H 1.08997 * 109.46819 * 29.97206 * 8 7 6 37 37 H 1.08996 * 109.47134 * 149.97432 * 8 7 6 38 38 H 0.97002 * 119.99974 * 0.02562 * 12 10 9 39 39 H 1.08996 * 109.46778 * 299.99700 * 15 13 12 40 40 H 1.08992 * 109.47514 * 59.99987 * 15 13 12 41 41 H 1.09000 * 109.46986 * 179.97438 * 16 15 13 42 42 H 1.08993 * 109.47662 * 299.99908 * 16 15 13 43 43 H 1.08998 * 109.46505 * 179.97438 * 17 16 15 44 44 H 1.08996 * 109.46884 * 60.00293 * 17 16 15 45 45 H 0.97005 * 119.99239 * 94.99888 * 20 18 17 46 46 H 0.96998 * 119.99451 * 180.02562 * 24 23 21 47 47 H 1.08996 * 109.47452 * 59.99785 * 29 13 12 48 48 H 1.09000 * 109.47054 * 299.99945 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 -0.0049 5 8 4.3043 2.3077 -0.0101 6 7 4.2548 -0.0066 -0.0048 7 6 3.6205 -1.1600 -0.0007 8 6 4.4080 -2.4450 -0.0015 9 6 2.2255 -1.2044 0.0043 10 6 1.5171 -2.4995 0.0095 11 8 1.2291 -3.0307 1.0645 12 7 1.1895 -3.0930 -1.1554 13 6 0.4860 -4.3780 -1.1504 14 1 -0.2027 -4.4118 -0.3061 15 6 1.5020 -5.5151 -1.0257 16 6 0.7671 -6.8571 -1.0198 17 6 -0.0174 -7.0147 -2.3239 18 6 -1.0333 -5.8775 -2.4486 19 1 -1.5925 -5.9901 -3.3774 20 7 -1.9586 -5.9227 -1.3136 21 6 -3.0596 -6.7355 -1.3598 22 1 -3.2462 -7.3430 -2.2331 23 6 -3.9366 -6.7780 -0.2846 24 7 -3.7095 -6.0372 0.7795 25 14 -5.4382 -7.8873 -0.3473 26 1 -5.4649 -8.6114 -1.6434 27 1 -5.3764 -8.8673 0.7667 28 1 -6.6674 -7.0644 -0.2151 29 6 -0.2980 -4.5352 -2.4548 30 1 -0.3634 0.0045 1.0276 31 1 -0.3633 0.8878 -0.5178 32 1 -0.3634 -0.8922 -0.5100 33 1 1.6936 2.1313 -0.0004 34 1 4.5039 2.6426 -0.8951 35 1 4.5938 -2.7565 -1.0294 36 1 5.3586 -2.2887 0.5083 37 1 3.8411 -3.2189 0.5160 38 1 1.4196 -2.6693 -1.9972 39 1 2.1906 -5.4812 -1.8699 40 1 2.0605 -5.4031 -0.0965 41 1 1.4909 -7.6673 -0.9314 42 1 0.0787 -6.8907 -0.1754 43 1 -0.5405 -7.9709 -2.3198 44 1 0.6711 -6.9812 -3.1683 45 1 -1.7911 -5.3768 -0.5294 46 1 -4.3221 -6.0672 1.5309 47 1 0.3906 -4.5013 -3.2990 48 1 -1.0218 -3.7251 -2.5435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981537875.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:07 Heat of formation + Delta-G solvation = -74.101544 kcal Electronic energy + Delta-G solvation = -29352.518115 eV Core-core repulsion = 25405.995670 eV Total energy + Delta-G solvation = -3946.522445 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10044 -40.80102 -39.40037 -38.13015 -36.01455 -35.40872 -34.70753 -32.98740 -32.62823 -30.64438 -29.72670 -29.11149 -28.59602 -25.69313 -25.02143 -23.29202 -23.08841 -22.40524 -21.70232 -20.21344 -19.44941 -19.21665 -18.71841 -18.28658 -17.42083 -16.75850 -16.53407 -16.24250 -15.66267 -15.40417 -15.36506 -15.20283 -15.15693 -14.90714 -14.69668 -14.36161 -14.21939 -13.91635 -13.70771 -13.42746 -13.41147 -13.33906 -13.13664 -12.93710 -12.87127 -12.83682 -12.63566 -12.57101 -12.16452 -12.09522 -11.78175 -11.60328 -11.52950 -11.23143 -10.99326 -10.82019 -10.65753 -10.52799 -10.07200 -9.90860 -8.93358 -7.89191 -5.16341 -0.34568 0.01776 1.43228 1.47018 1.47683 1.57308 2.00591 2.36021 2.54712 2.58833 3.37086 3.41669 3.44497 3.59419 3.79873 3.92353 3.97518 4.09700 4.17372 4.21132 4.25745 4.37924 4.40010 4.47931 4.51226 4.56804 4.59881 4.62086 4.72322 4.77233 4.83397 4.84798 4.94704 5.03477 5.06837 5.10092 5.14148 5.22558 5.32850 5.39201 5.44491 5.46645 5.55220 5.65000 5.70524 6.32987 6.47087 6.54975 6.78467 7.15983 7.38696 8.18611 8.38606 9.34381 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018245 B = 0.002854 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.267477 B = 9810.041664 C =10646.605864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.011 3.989 3 C -0.188 4.188 4 C 0.330 3.670 5 O -0.486 6.486 6 N -0.527 5.527 7 C 0.189 3.811 8 C -0.111 4.111 9 C -0.207 4.207 10 C 0.576 3.424 11 O -0.573 6.573 12 N -0.696 5.696 13 C 0.152 3.848 14 H 0.046 0.954 15 C -0.110 4.110 16 C -0.106 4.106 17 C -0.127 4.127 18 C 0.168 3.832 19 H 0.054 0.946 20 N -0.734 5.734 21 C -0.227 4.227 22 H 0.078 0.922 23 C -0.081 4.081 24 N -0.972 5.972 25 Si 0.966 3.034 26 H -0.263 1.263 27 H -0.300 1.300 28 H -0.297 1.297 29 C -0.115 4.115 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.061 0.939 33 H 0.176 0.824 34 H 0.426 0.574 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.065 0.935 38 H 0.415 0.585 39 H 0.094 0.906 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.027 0.973 43 H 0.039 0.961 44 H 0.086 0.914 45 H 0.371 0.629 46 H 0.246 0.754 47 H 0.109 0.891 48 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.396 14.777 -10.729 25.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.003 3.997 3 C -0.208 4.208 4 C 0.152 3.848 5 O -0.297 6.297 6 N -0.247 5.247 7 C 0.051 3.949 8 C -0.168 4.168 9 C -0.213 4.213 10 C 0.361 3.639 11 O -0.452 6.452 12 N -0.347 5.347 13 C 0.048 3.952 14 H 0.064 0.936 15 C -0.149 4.149 16 C -0.145 4.145 17 C -0.167 4.167 18 C 0.059 3.941 19 H 0.072 0.928 20 N -0.375 5.375 21 C -0.360 4.360 22 H 0.096 0.904 23 C -0.273 4.273 24 N -0.623 5.623 25 Si 0.797 3.203 26 H -0.188 1.188 27 H -0.228 1.228 28 H -0.225 1.225 29 C -0.153 4.153 30 H 0.097 0.903 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.127 0.873 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.252 0.748 39 H 0.113 0.887 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.104 0.896 45 H 0.204 0.796 46 H 0.055 0.945 47 H 0.127 0.873 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 17.933 14.315 -9.520 24.842 hybrid contribution -1.846 -0.272 0.353 1.899 sum 16.087 14.043 -9.167 23.239 Atomic orbital electron populations 1.20989 0.88616 1.04774 1.03781 1.20419 0.97484 0.90879 0.90947 1.22097 0.93320 0.99923 1.05494 1.19464 0.87605 0.85157 0.92592 1.84695 1.75765 1.33099 1.36130 1.67030 1.42277 0.98298 1.17145 1.21206 0.88995 0.93768 0.90965 1.20896 1.00233 0.90620 1.05015 1.20668 0.95205 0.93891 1.11491 1.18131 0.77756 0.84021 0.83979 1.90867 1.55268 1.66200 1.32896 1.45961 1.58137 1.22287 1.08303 1.20821 0.93184 0.82221 0.99003 0.93584 1.21760 0.97513 0.93530 1.02077 1.21289 0.98125 0.96802 0.98257 1.22061 0.98078 0.99178 0.97343 1.20503 0.89855 0.93193 0.90540 0.92823 1.42754 1.25857 1.51122 1.17768 1.19673 0.99826 1.16258 1.00202 0.90425 1.25506 1.02553 1.02455 0.96786 1.69855 1.39611 1.45590 1.07282 0.85157 0.79658 0.78116 0.77390 1.18761 1.22770 1.22455 1.21965 0.99032 0.97721 0.96592 0.90342 0.87022 0.92005 0.80677 0.71201 0.87280 0.89134 0.91621 0.74771 0.88730 0.93624 0.91386 0.95414 0.94237 0.89551 0.79638 0.94475 0.87266 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.44 9.69 71.23 0.69 -1.75 16 2 C 0.01 0.22 5.95 -19.43 -0.12 0.11 16 3 C -0.19 -3.15 9.73 22.43 0.22 -2.94 16 4 C 0.33 6.33 7.74 84.81 0.66 6.99 16 5 O -0.49 -7.08 13.55 -88.01 -1.19 -8.27 16 6 N -0.53 -12.10 10.28 -295.88 -3.04 -15.14 16 7 C 0.19 4.38 6.82 42.91 0.29 4.67 16 8 C -0.11 -2.14 9.78 71.24 0.70 -1.45 16 9 C -0.21 -5.12 5.65 -19.99 -0.11 -5.23 16 10 C 0.58 17.10 4.29 86.72 0.37 17.47 16 11 O -0.57 -23.47 16.76 -3.96 -0.07 -23.53 16 12 N -0.70 -16.95 5.07 -445.62 -2.26 -19.21 16 13 C 0.15 4.63 2.28 44.99 0.10 4.73 16 14 H 0.05 1.96 5.94 -2.38 -0.01 1.95 16 15 C -0.11 -3.11 5.49 30.60 0.17 -2.94 16 16 C -0.11 -3.51 5.77 30.60 0.18 -3.34 16 17 C -0.13 -4.01 5.61 30.60 0.17 -3.84 16 18 C 0.17 5.97 3.10 45.01 0.14 6.11 16 19 H 0.05 1.90 8.08 -2.39 -0.02 1.88 16 20 N -0.73 -35.85 4.28 -322.85 -1.38 -37.23 16 21 C -0.23 -12.42 9.93 84.03 0.83 -11.59 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 24 N -0.97 -61.19 13.06 21.65 0.28 -60.90 16 25 Si 0.97 46.84 29.55 68.60 2.03 48.87 16 26 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 27 H -0.30 -14.77 7.11 99.48 0.71 -14.06 16 28 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 29 C -0.11 -3.14 5.08 30.61 0.16 -2.99 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.69 16 31 H 0.11 1.40 8.10 -2.38 -0.02 1.38 16 32 H 0.06 1.42 7.18 -2.39 -0.02 1.40 16 33 H 0.18 1.84 8.06 -2.91 -0.02 1.82 16 34 H 0.43 1.43 9.06 -74.05 -0.67 0.76 16 35 H 0.11 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.06 1.52 7.06 -2.39 -0.02 1.50 16 38 H 0.42 6.98 8.59 -92.71 -0.80 6.18 16 39 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 40 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 42 H 0.03 1.19 7.60 -2.39 -0.02 1.17 16 43 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 45 H 0.37 20.19 6.06 -92.70 -0.56 19.62 16 46 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 47 H 0.11 2.02 8.14 -2.39 -0.02 2.01 16 48 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -79.40 389.57 -1.75 -81.14 By element: Atomic # 1 Polarization: 35.52 SS G_CDS: -1.02 Total: 34.50 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 4.91 Total: -0.23 kcal Atomic # 7 Polarization: -126.08 SS G_CDS: -6.40 Total: -132.48 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -1.26 Total: -31.80 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -79.40 -1.75 -81.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537875.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.042 kcal (2) G-P(sol) polarization free energy of solvation -79.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds