Wall clock time and date at job start Tue Mar 31 2020 17:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38004 * 120.81891 * 2 1 4 4 C 1.39122 * 119.26581 * 180.02562 * 3 2 1 5 5 O 1.35498 * 119.52554 * 179.97438 * 4 3 2 6 6 N 1.32439 * 120.94857 * 359.97438 * 4 3 2 7 7 C 1.31644 * 121.80215 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.68573 * 179.72417 * 7 6 4 9 9 C 1.39565 * 120.62100 * 0.02562 * 7 6 4 10 10 C 1.47620 * 120.49590 * 179.97438 * 9 7 6 11 11 O 1.21574 * 119.99731 * 90.00039 * 10 9 7 12 12 N 1.34775 * 120.00018 * 270.00020 * 10 9 7 13 13 C 1.46500 * 120.00180 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.46777 * 34.99713 * 13 12 10 15 15 C 1.52996 * 109.46904 * 275.00187 * 13 12 10 16 16 C 1.53001 * 109.47206 * 179.97438 * 15 13 12 17 17 C 1.53001 * 109.46937 * 59.99775 * 16 15 13 18 18 C 1.53004 * 109.47056 * 299.99817 * 17 16 15 19 19 H 1.09000 * 109.47424 * 300.00500 * 18 17 16 20 20 N 1.46498 * 109.47270 * 179.97438 * 18 17 16 21 21 C 1.36943 * 119.99820 * 85.00216 * 20 18 17 22 22 H 1.07999 * 119.99868 * 359.97438 * 21 20 18 23 23 C 1.38811 * 119.99789 * 180.02562 * 21 20 18 24 24 N 1.31618 * 120.00219 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 119.99650 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47194 * 59.99796 * 25 23 21 27 27 H 1.48505 * 109.46810 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47231 * 299.99205 * 25 23 21 29 29 C 1.52992 * 109.47382 * 154.99781 * 13 12 10 30 30 H 1.08994 * 109.47330 * 90.00089 * 1 2 3 31 31 H 1.09004 * 109.46824 * 209.99891 * 1 2 3 32 32 H 1.08999 * 109.47069 * 329.99763 * 1 2 3 33 33 H 1.08000 * 120.36555 * 0.04065 * 3 2 1 34 34 H 0.96693 * 114.00252 * 269.97600 * 5 4 3 35 35 H 1.08992 * 109.47445 * 90.00630 * 8 7 6 36 36 H 1.09002 * 109.46595 * 210.00393 * 8 7 6 37 37 H 1.08998 * 109.47438 * 329.99904 * 8 7 6 38 38 H 0.96999 * 119.99774 * 359.97438 * 12 10 9 39 39 H 1.09000 * 109.47016 * 299.99379 * 15 13 12 40 40 H 1.08996 * 109.47578 * 59.99403 * 15 13 12 41 41 H 1.09001 * 109.47178 * 179.97438 * 16 15 13 42 42 H 1.09003 * 109.47300 * 299.99737 * 16 15 13 43 43 H 1.09000 * 109.47412 * 60.00324 * 17 16 15 44 44 H 1.09005 * 109.47024 * 180.02562 * 17 16 15 45 45 H 0.97003 * 120.00450 * 265.01170 * 20 18 17 46 46 H 0.97001 * 120.00033 * 180.02562 * 24 23 21 47 47 H 1.09002 * 109.47336 * 299.99971 * 29 13 12 48 48 H 1.09000 * 109.47220 * 60.00203 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1475 -0.0005 5 8 4.3042 2.3079 -0.0011 6 7 4.2548 -0.0064 -0.0005 7 6 3.6205 -1.1600 -0.0005 8 6 4.4082 -2.4447 -0.0069 9 6 2.2256 -1.2043 -0.0011 10 6 1.5172 -2.4994 -0.0016 11 8 1.2251 -3.0329 1.0510 12 7 1.1943 -3.0904 -1.1691 13 6 0.4907 -4.3754 -1.1697 14 1 -0.2012 -4.4111 -0.3282 15 6 1.5062 -5.5128 -1.0435 16 6 0.7715 -6.8548 -1.0435 17 6 -0.0078 -7.0096 -2.3510 18 6 -1.0234 -5.8722 -2.4771 19 1 -1.7151 -5.9076 -1.6354 20 7 -1.7692 -6.0200 -3.7293 21 6 -2.8703 -6.8326 -3.7786 22 1 -3.1886 -7.3649 -2.8944 23 6 -3.5766 -6.9731 -4.9653 24 7 -3.1884 -6.3248 -6.0430 25 14 -5.0791 -8.0811 -5.0323 26 1 -6.0957 -7.5956 -4.0649 27 1 -5.6501 -8.0583 -6.4030 28 1 -4.6861 -9.4697 -4.6824 29 6 -0.2882 -4.5298 -2.4774 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6935 2.1314 0.0007 34 1 4.5072 2.6444 -0.8845 35 1 4.6023 -2.7570 1.0192 36 1 3.8371 -3.2184 -0.5202 37 1 5.3546 -2.2882 -0.5243 38 1 1.4270 -2.6645 -2.0089 39 1 2.1982 -5.4770 -1.8849 40 1 2.0612 -5.4027 -0.1119 41 1 1.4951 -7.6652 -0.9540 42 1 0.0798 -6.8904 -0.2018 43 1 0.6839 -6.9741 -3.1927 44 1 -0.5316 -7.9655 -2.3508 45 1 -1.4830 -5.5423 -4.5236 46 1 -3.6822 -6.4227 -6.8721 47 1 -1.0117 -3.7195 -2.5673 48 1 0.4038 -4.4941 -3.3188 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981537877.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:14 Heat of formation + Delta-G solvation = -51.530285 kcal Electronic energy + Delta-G solvation = -28767.498078 eV Core-core repulsion = 24821.954396 eV Total energy + Delta-G solvation = -3945.543682 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.29368 -39.79099 -38.14350 -37.35821 -34.73564 -34.66977 -33.40639 -32.15165 -31.16356 -29.50109 -28.42165 -28.13799 -27.58916 -24.27284 -23.70018 -22.13054 -21.71606 -21.50154 -20.47117 -19.57570 -18.79864 -17.96455 -17.54993 -16.98549 -16.45184 -16.03050 -15.23689 -14.72614 -14.49458 -14.45255 -14.34532 -14.01769 -13.82186 -13.67882 -13.58673 -13.50852 -13.21477 -13.06593 -12.73280 -12.67201 -12.45372 -12.26087 -12.19289 -12.10474 -11.98952 -11.02904 -11.00399 -10.89298 -10.76667 -10.48780 -10.39334 -10.26531 -10.20116 -9.95523 -9.87867 -9.71450 -9.58723 -9.18130 -9.08059 -8.89389 -6.99505 -5.79743 -3.08479 0.39327 0.75032 2.36987 2.82581 3.13619 3.26687 3.42202 3.46954 3.47508 4.06209 4.14204 4.42194 4.55209 4.64149 4.79831 4.91801 4.96421 5.03909 5.08961 5.18617 5.21229 5.27320 5.28673 5.46322 5.51370 5.55658 5.59526 5.64178 5.68389 5.74219 5.79209 5.83099 5.92689 5.97582 6.04230 6.09950 6.23628 6.27502 6.46144 6.48802 6.56810 6.68774 6.93078 7.03412 7.08868 7.35069 7.48332 7.67679 8.02704 8.39019 9.50192 10.07138 10.41749 11.42880 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019039 B = 0.002427 C = 0.002281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.334116 B =11534.603312 C =12271.316030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.014 3.986 3 C -0.197 4.197 4 C 0.331 3.669 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.195 3.805 8 C -0.112 4.112 9 C -0.192 4.192 10 C 0.573 3.427 11 O -0.527 6.527 12 N -0.714 5.714 13 C 0.147 3.853 14 H 0.089 0.911 15 C -0.125 4.125 16 C -0.114 4.114 17 C -0.137 4.137 18 C 0.184 3.816 19 H 0.048 0.952 20 N -0.724 5.724 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.934 5.934 25 Si 0.906 3.094 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 C -0.129 4.129 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.401 0.599 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.383 0.617 46 H 0.255 0.745 47 H 0.068 0.932 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.521 14.399 10.179 22.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.006 3.994 3 C -0.218 4.218 4 C 0.153 3.847 5 O -0.289 6.289 6 N -0.228 5.228 7 C 0.056 3.944 8 C -0.170 4.170 9 C -0.198 4.198 10 C 0.357 3.643 11 O -0.403 6.403 12 N -0.364 5.364 13 C 0.043 3.957 14 H 0.107 0.893 15 C -0.163 4.163 16 C -0.153 4.153 17 C -0.178 4.178 18 C 0.073 3.927 19 H 0.066 0.934 20 N -0.364 5.364 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.583 5.583 25 Si 0.737 3.263 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.213 1.213 29 C -0.168 4.168 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.262 0.738 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.104 0.896 38 H 0.235 0.765 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.217 0.783 46 H 0.065 0.935 47 H 0.087 0.913 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.993 13.927 11.544 23.495 hybrid contribution -1.329 0.007 -1.283 1.847 sum 13.664 13.934 10.261 22.049 Atomic orbital electron populations 1.20980 0.89086 1.04422 1.03879 1.20239 0.97087 0.90813 0.91243 1.21892 0.93714 0.99429 1.06732 1.19246 0.87049 0.85030 0.93389 1.84730 1.75988 1.34024 1.34110 1.66994 1.41850 0.97832 1.16089 1.21040 0.89133 0.93172 0.91035 1.20875 1.00435 0.91501 1.04145 1.20744 0.94858 0.94499 1.09655 1.17847 0.78440 0.83652 0.84390 1.90833 1.53584 1.64685 1.31194 1.46244 1.58989 1.23116 1.08040 1.21108 0.93581 0.81060 0.99917 0.89264 1.21892 0.98016 0.94811 1.01608 1.21485 0.98961 0.95687 0.99186 1.22299 0.98546 1.01420 0.95500 1.20102 0.91519 0.90116 0.90920 0.93353 1.42393 1.31267 1.55311 1.07477 1.19195 1.02761 1.19322 0.95628 0.91200 1.24732 0.99655 1.00669 0.95881 1.69645 1.41864 1.46068 1.00677 0.86284 0.82943 0.80488 0.76580 1.21268 1.21727 1.21256 1.22103 0.99109 1.00259 0.95326 0.89380 0.90196 0.90112 0.83551 0.73843 0.89398 0.90145 0.89587 0.76527 0.91929 0.92088 0.92436 0.92145 0.92640 0.91872 0.78341 0.93482 0.91291 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.04 9.69 36.01 0.35 -0.69 16 2 C 0.01 0.14 5.95 -103.96 -0.62 -0.48 16 3 C -0.20 -1.70 9.72 -39.34 -0.38 -2.08 16 4 C 0.33 3.28 7.74 -16.96 -0.13 3.15 16 5 O -0.48 -3.87 13.55 -18.19 -0.25 -4.11 16 6 N -0.51 -5.82 10.29 -9.20 -0.09 -5.91 16 7 C 0.19 2.14 6.82 -82.18 -0.56 1.58 16 8 C -0.11 -1.03 9.79 36.00 0.35 -0.67 16 9 C -0.19 -2.13 5.65 -104.82 -0.59 -2.72 16 10 C 0.57 7.07 4.29 -12.43 -0.05 7.02 16 11 O -0.53 -8.41 16.77 5.30 0.09 -8.32 16 12 N -0.71 -7.79 5.07 -54.83 -0.28 -8.07 16 13 C 0.15 1.89 2.45 -67.94 -0.17 1.73 16 14 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 15 C -0.12 -1.55 5.49 -26.73 -0.15 -1.70 16 16 C -0.11 -1.55 5.92 -26.73 -0.16 -1.71 16 17 C -0.14 -2.31 5.50 -26.73 -0.15 -2.46 16 18 C 0.18 3.41 2.77 -67.90 -0.19 3.22 16 19 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 20 N -0.72 -17.29 5.12 -53.40 -0.27 -17.57 16 21 C -0.24 -6.41 9.93 -15.06 -0.15 -6.56 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -27.57 13.06 55.49 0.72 -26.84 16 25 Si 0.91 22.03 29.55 -169.99 -5.02 17.01 16 26 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 28 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 29 C -0.13 -1.90 4.86 -26.71 -0.13 -2.03 16 30 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.80 7.19 -51.93 -0.37 0.43 16 32 H 0.08 0.52 8.10 -51.93 -0.42 0.10 16 33 H 0.15 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.40 1.13 9.06 45.56 0.41 1.54 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.08 0.71 7.06 -51.93 -0.37 0.35 16 37 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.40 3.60 8.59 -40.82 -0.35 3.25 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 45 H 0.38 9.71 7.80 -40.82 -0.32 9.39 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 394.00 15.07 5.94 5.94 Total: -1.00 -33.59 394.00 -8.83 -42.43 By element: Atomic # 1 Polarization: 17.18 SS G_CDS: -6.85 Total: 10.33 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -2.82 Total: -4.88 kcal Atomic # 7 Polarization: -58.47 SS G_CDS: 0.08 Total: -58.39 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: -0.16 Total: -12.43 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.59 -8.83 -42.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981537877.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.105 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds