Wall clock time and date at job start Tue Mar 31 2020 17:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38089 * 119.58431 * 2 1 4 4 C 1.38788 * 119.28462 * 180.27285 * 3 2 1 5 5 C 1.50704 * 120.75241 * 179.72085 * 4 3 2 6 6 C 1.38415 * 118.48474 * 359.46565 * 4 3 2 7 7 C 1.50700 * 120.44512 * 180.28029 * 6 4 3 8 8 C 1.50698 * 109.47506 * 270.28074 * 7 6 4 9 9 O 1.21287 * 119.99727 * 0.02562 * 8 7 6 10 10 N 1.34768 * 120.00329 * 179.97438 * 8 7 6 11 11 C 1.48218 * 119.97049 * 179.72033 * 10 8 7 12 12 C 1.47608 * 110.03440 * 102.55588 * 11 10 8 13 13 C 1.53788 * 111.84730 * 58.43769 * 12 11 10 14 14 N 1.43465 * 107.95952 * 281.53923 * 13 12 11 15 15 C 1.36938 * 118.94342 * 273.63496 * 14 13 12 16 16 H 1.08005 * 119.99545 * 25.10205 * 15 14 13 17 17 C 1.38814 * 120.00301 * 205.10624 * 15 14 13 18 18 N 1.31615 * 119.99655 * 14.42751 * 17 15 14 19 19 Si 1.86803 * 120.00000 * 194.42813 * 17 15 14 20 20 H 1.48500 * 109.47108 * 89.99673 * 19 17 15 21 21 H 1.48502 * 109.46995 * 209.99725 * 19 17 15 22 22 H 1.48504 * 109.46897 * 329.99557 * 19 17 15 23 23 C 1.48859 * 122.12125 * 93.60622 * 14 13 12 24 24 C 1.43624 * 119.96728 * 0.02562 * 10 8 7 25 25 C 1.38875 * 119.11378 * 0.55606 * 6 4 3 26 26 O 1.35685 * 119.68404 * 179.67827 * 25 6 4 27 27 N 1.31935 * 119.57964 * 180.02562 * 2 1 3 28 28 H 1.09005 * 109.47176 * 89.99376 * 1 2 3 29 29 H 1.08995 * 109.47176 * 209.99710 * 1 2 3 30 30 H 1.09006 * 109.47268 * 330.00028 * 1 2 3 31 31 H 1.07995 * 120.35869 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.46521 * 90.01030 * 5 4 3 33 33 H 1.09004 * 109.46876 * 210.00199 * 5 4 3 34 34 H 1.08991 * 109.47417 * 330.00789 * 5 4 3 35 35 H 1.09005 * 109.46815 * 30.28039 * 7 6 4 36 36 H 1.09001 * 109.47296 * 150.27512 * 7 6 4 37 37 H 1.09001 * 109.32346 * 222.78154 * 11 10 8 38 38 H 1.08990 * 109.32410 * 342.25512 * 11 10 8 39 39 H 1.09005 * 109.10435 * 297.75567 * 12 11 10 40 40 H 1.09001 * 108.84071 * 178.93769 * 12 11 10 41 41 H 1.09007 * 109.76674 * 161.92999 * 13 12 11 42 42 H 1.08994 * 109.81299 * 41.17589 * 13 12 11 43 43 H 0.97008 * 119.99594 * 180.02562 * 18 17 15 44 44 H 1.08996 * 109.48192 * 200.66262 * 23 14 13 45 45 H 1.09004 * 109.48840 * 80.63703 * 23 14 13 46 46 H 1.08995 * 108.87380 * 31.42339 * 24 10 8 47 47 H 1.09005 * 108.87156 * 149.86085 * 24 10 8 48 48 H 0.96691 * 113.99988 * 270.02271 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1936 -0.0058 5 6 4.3540 2.4847 -0.0123 6 6 4.2304 -0.0264 0.0000 7 6 5.7362 -0.0858 0.0005 8 6 6.2387 -0.1052 -1.4201 9 8 5.4515 -0.0735 -2.3423 10 7 7.5628 -0.1569 -1.6660 11 6 8.0560 -0.1822 -3.0635 12 6 8.5598 1.1513 -3.4462 13 6 9.6921 1.6232 -2.5187 14 7 9.0984 2.0984 -1.3021 15 6 8.6793 3.4002 -1.2337 16 1 8.4131 3.9299 -2.1365 17 6 8.5965 4.0391 -0.0041 18 7 9.1781 3.5113 1.0521 19 14 7.6597 5.6477 0.1515 20 1 6.2402 5.3639 0.4827 21 1 8.2646 6.4705 1.2296 22 1 7.7296 6.3876 -1.1342 23 6 8.9227 1.2217 -0.1120 24 6 8.4944 -0.1939 -0.5735 25 6 3.4802 -1.1950 -0.0005 26 8 4.1092 -2.3973 -0.0015 27 7 2.1583 -1.1474 -0.0005 28 1 -0.3634 0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6479 2.1356 0.0004 32 1 4.5457 2.7984 1.0139 33 1 5.3017 2.3356 -0.5297 34 1 3.7768 3.2537 -0.5255 35 1 6.1342 0.7892 0.5147 36 1 6.0641 -0.9894 0.5143 37 1 8.8607 -0.9125 -3.1488 38 1 7.2410 -0.4680 -3.7284 39 1 7.7407 1.8690 -3.4000 40 1 8.9343 1.1060 -4.4689 41 1 10.2484 2.4295 -2.9967 42 1 10.3623 0.7916 -2.3012 43 1 9.1199 3.9576 1.9115 44 1 8.1541 1.6403 0.5376 45 1 9.8640 1.1566 0.4339 46 1 8.0331 -0.7144 0.2657 47 1 9.3809 -0.7467 -0.8846 48 1 4.2915 -2.7450 -0.8851 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981811661.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:44 Heat of formation + Delta-G solvation = -37.409684 kcal Electronic energy + Delta-G solvation = -30793.723580 eV Core-core repulsion = 26848.792214 eV Total energy + Delta-G solvation = -3944.931367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.00614 -40.89762 -38.58081 -38.26652 -35.99848 -35.76904 -34.35028 -32.96365 -32.66395 -31.15396 -29.23656 -28.72837 -27.49143 -26.50230 -25.42476 -23.99779 -23.22484 -21.85654 -21.43650 -19.88102 -19.35291 -18.77174 -18.28272 -17.91518 -17.48317 -16.82826 -16.65572 -16.14883 -16.00957 -15.57918 -15.38729 -15.18022 -14.89440 -14.56527 -14.35614 -14.21635 -14.06447 -13.90366 -13.86357 -13.77300 -13.33405 -13.20933 -13.14380 -12.91465 -12.85978 -12.78936 -12.54757 -12.50988 -12.49184 -12.32485 -12.04975 -11.71202 -11.65572 -11.42335 -10.92191 -10.49402 -10.46769 -10.38385 -9.62659 -9.52389 -8.61727 -7.82642 -5.25433 -0.04381 0.15490 1.42832 1.46648 1.52440 1.64031 2.16011 2.42936 2.52720 2.78892 3.30536 3.44976 3.62179 3.67053 3.76497 3.82097 3.87574 4.14511 4.22392 4.24985 4.33980 4.35887 4.43157 4.48304 4.53299 4.56651 4.58615 4.64402 4.76939 4.79891 4.81169 4.87051 4.95438 4.97523 5.06666 5.08522 5.18262 5.25391 5.30254 5.32285 5.49934 5.60443 5.63801 5.75354 5.82695 6.42547 6.49456 6.55235 6.90901 7.21147 7.23902 7.98701 8.36759 9.21493 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011863 B = 0.004870 C = 0.003898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2359.644298 B = 5748.385415 C = 7181.613970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.139 3.861 3 C -0.184 4.184 4 C -0.021 4.021 5 C -0.114 4.114 6 C -0.146 4.146 7 C -0.088 4.088 8 C 0.524 3.476 9 O -0.585 6.585 10 N -0.583 5.583 11 C 0.127 3.873 12 C -0.153 4.153 13 C 0.159 3.841 14 N -0.604 5.604 15 C -0.256 4.256 16 H 0.050 0.950 17 C -0.033 4.033 18 N -0.927 5.927 19 Si 0.938 3.062 20 H -0.277 1.277 21 H -0.296 1.296 22 H -0.281 1.281 23 C 0.172 3.828 24 C 0.086 3.914 25 C 0.316 3.684 26 O -0.485 6.485 27 N -0.530 5.530 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.165 0.835 32 H 0.083 0.917 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.026 0.974 40 H 0.083 0.917 41 H 0.034 0.966 42 H 0.057 0.943 43 H 0.249 0.751 44 H 0.047 0.953 45 H 0.022 0.978 46 H 0.090 0.910 47 H 0.089 0.911 48 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.361 -9.185 -2.304 13.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.002 3.998 3 C -0.203 4.203 4 C -0.029 4.029 5 C -0.171 4.171 6 C -0.150 4.150 7 C -0.128 4.128 8 C 0.314 3.686 9 O -0.466 6.466 10 N -0.313 5.313 11 C 0.006 3.994 12 C -0.194 4.194 13 C 0.031 3.969 14 N -0.326 5.326 15 C -0.386 4.386 16 H 0.067 0.933 17 C -0.228 4.228 18 N -0.574 5.574 19 Si 0.768 3.232 20 H -0.203 1.203 21 H -0.223 1.223 22 H -0.206 1.206 23 C 0.047 3.953 24 C -0.039 4.039 25 C 0.138 3.862 26 O -0.294 6.294 27 N -0.251 5.251 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.119 0.881 31 H 0.182 0.818 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.103 0.897 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.115 0.885 38 H 0.090 0.910 39 H 0.045 0.955 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.076 0.924 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.040 0.960 46 H 0.109 0.891 47 H 0.108 0.892 48 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -10.139 -9.895 -2.041 14.314 hybrid contribution 0.543 1.955 -0.218 2.040 sum -9.597 -7.940 -2.259 12.659 Atomic orbital electron populations 1.20821 0.85718 1.04711 1.04224 1.21606 0.98468 0.86676 0.93068 1.22113 0.93222 1.00659 1.04337 1.20320 0.94719 0.94767 0.93055 1.20802 0.99484 0.93704 1.03070 1.20286 0.95900 0.93191 1.05598 1.20488 0.91411 1.06016 0.94897 1.20542 0.82253 0.74933 0.90907 1.90614 1.56044 1.52626 1.47315 1.47474 1.05090 1.70948 1.07805 1.20773 0.99419 0.97641 0.81555 1.21751 0.99981 0.97096 1.00587 1.20423 0.92763 0.97050 0.86620 1.43856 1.69692 1.07872 1.11213 1.19280 1.37089 0.89707 0.92563 0.93258 1.25393 1.00775 1.00013 0.96666 1.70124 1.46023 1.41150 1.00057 0.85707 0.79449 0.81145 0.76905 1.20295 1.22269 1.20649 1.21729 0.98262 0.87350 0.88004 1.22120 0.93640 0.98412 0.89711 1.18897 0.86890 0.85078 0.95342 1.84632 1.76556 1.33112 1.35100 1.67022 1.09446 1.31824 1.16772 0.89167 0.90410 0.88055 0.81757 0.89892 0.93062 0.89726 0.88329 0.85941 0.88502 0.90992 0.95465 0.89899 0.94801 0.92433 0.94182 0.93494 0.96014 0.89145 0.89240 0.72905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 10.17 71.24 0.72 -0.94 16 2 C 0.14 3.68 6.78 42.51 0.29 3.96 16 3 C -0.18 -4.86 9.44 22.37 0.21 -4.65 16 4 C -0.02 -0.67 5.91 -19.69 -0.12 -0.79 16 5 C -0.11 -3.73 9.28 71.24 0.66 -3.07 16 6 C -0.15 -4.81 4.40 -19.67 -0.09 -4.90 16 7 C -0.09 -2.83 3.51 29.10 0.10 -2.73 16 8 C 0.52 18.59 7.33 87.66 0.64 19.24 16 9 O -0.58 -24.00 15.47 -3.05 -0.05 -24.04 16 10 N -0.58 -18.98 2.45 -830.30 -2.03 -21.01 16 11 C 0.13 3.78 5.74 84.36 0.48 4.26 16 12 C -0.15 -5.12 5.65 29.17 0.16 -4.96 16 13 C 0.16 5.96 5.63 87.21 0.49 6.45 16 14 N -0.60 -27.50 2.54 -697.97 -1.77 -29.28 16 15 C -0.26 -13.38 9.27 84.03 0.78 -12.60 16 16 H 0.05 2.67 7.87 -2.91 -0.02 2.65 16 17 C -0.03 -1.72 4.95 84.86 0.42 -1.30 16 18 N -0.93 -50.61 10.90 21.65 0.24 -50.37 16 19 Si 0.94 43.17 29.58 68.60 2.03 45.20 16 20 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 23 C 0.17 7.20 5.18 86.58 0.45 7.65 16 24 C 0.09 2.65 5.05 87.57 0.44 3.10 16 25 C 0.32 10.18 7.72 84.78 0.65 10.83 16 26 O -0.49 -13.62 12.62 -90.03 -1.14 -14.76 16 27 N -0.53 -16.68 10.30 -296.97 -3.06 -19.74 16 28 H 0.09 1.34 8.14 -2.38 -0.02 1.33 16 29 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.10 1.20 8.08 -2.38 -0.02 1.18 16 31 H 0.16 3.23 8.06 -2.91 -0.02 3.21 16 32 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 33 H 0.05 2.02 6.56 -2.38 -0.02 2.00 16 34 H 0.08 2.46 8.10 -2.39 -0.02 2.44 16 35 H 0.10 3.46 6.00 -2.38 -0.01 3.45 16 36 H 0.12 3.38 6.78 -2.39 -0.02 3.37 16 37 H 0.10 2.23 8.05 -2.39 -0.02 2.21 16 38 H 0.07 2.24 7.13 -2.39 -0.02 2.23 16 39 H 0.03 1.12 7.91 -2.38 -0.02 1.10 16 40 H 0.08 2.28 8.14 -2.39 -0.02 2.27 16 41 H 0.03 1.33 8.02 -2.38 -0.02 1.32 16 42 H 0.06 1.89 7.59 -2.39 -0.02 1.87 16 43 H 0.25 13.35 8.31 -92.70 -0.77 12.58 16 44 H 0.05 2.23 5.73 -2.39 -0.01 2.22 16 45 H 0.02 0.99 8.00 -2.38 -0.02 0.98 16 46 H 0.09 2.39 6.38 -2.39 -0.02 2.37 16 47 H 0.09 2.32 7.73 -2.38 -0.02 2.30 16 48 H 0.41 8.78 9.06 -74.06 -0.67 8.10 16 Total: -1.00 -68.96 379.09 0.84 -68.12 By element: Atomic # 1 Polarization: 26.01 SS G_CDS: 0.31 Total: 26.32 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.31 Total: 19.56 kcal Atomic # 7 Polarization: -113.77 SS G_CDS: -6.62 Total: -120.40 kcal Atomic # 8 Polarization: -37.62 SS G_CDS: -1.18 Total: -38.80 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.20 kcal Total: -68.96 0.84 -68.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981811661.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.713 kcal (2) G-P(sol) polarization free energy of solvation -68.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds