Wall clock time and date at job start Tue Mar 31 2020 17:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38092 * 119.58007 * 2 1 4 4 C 1.38786 * 119.28622 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.75563 * 179.97438 * 4 3 2 6 6 C 1.38418 * 118.48598 * 0.02562 * 4 3 2 7 7 C 1.50693 * 120.44419 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47625 * 89.99899 * 7 6 4 9 9 O 1.21284 * 119.99597 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00528 * 180.02562 * 8 7 6 11 11 C 1.47428 * 125.64707 * 0.02562 * 10 8 7 12 12 C 1.54905 * 104.83308 * 155.83470 * 11 10 8 13 13 C 1.55156 * 101.58170 * 37.00861 * 12 11 10 14 14 H 1.08999 * 110.71813 * 82.86204 * 13 12 11 15 15 N 1.46499 * 110.72464 * 205.95628 * 13 12 11 16 16 C 1.36937 * 120.00235 * 273.55056 * 15 13 12 17 17 H 1.07997 * 119.99640 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00266 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99806 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47086 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47094 * 120.00677 * 20 18 16 23 23 H 1.48509 * 109.46889 * 240.00704 * 20 18 16 24 24 C 1.47013 * 125.65102 * 179.71765 * 10 8 7 25 25 H 1.09003 * 109.88235 * 300.51082 * 24 10 8 26 26 C 1.52998 * 109.88431 * 61.67733 * 24 10 8 27 27 C 1.38878 * 119.11524 * 359.97438 * 6 4 3 28 28 O 1.35671 * 119.68741 * 180.02562 * 27 6 4 29 29 N 1.31929 * 119.58762 * 179.72859 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00191 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99343 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00061 * 1 2 3 33 33 H 1.08004 * 120.35871 * 359.95590 * 3 2 1 34 34 H 1.09000 * 109.47340 * 89.99945 * 5 4 3 35 35 H 1.09007 * 109.47327 * 210.00463 * 5 4 3 36 36 H 1.09001 * 109.47582 * 329.99855 * 5 4 3 37 37 H 1.09005 * 109.47562 * 210.00339 * 7 6 4 38 38 H 1.09008 * 109.47376 * 329.99714 * 7 6 4 39 39 H 1.09001 * 110.36557 * 274.67358 * 11 10 8 40 40 H 1.09006 * 110.36771 * 36.88620 * 11 10 8 41 41 H 1.09002 * 111.00534 * 155.08556 * 12 11 10 42 42 H 1.08999 * 111.00429 * 278.90153 * 12 11 10 43 43 H 0.96998 * 119.99916 * 93.54034 * 15 13 12 44 44 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.47374 * 58.54553 * 26 24 10 46 46 H 1.09007 * 109.47348 * 178.54885 * 26 24 10 47 47 H 1.08998 * 109.47287 * 298.54800 * 26 24 10 48 48 H 0.96703 * 113.99981 * 89.99988 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3538 2.4849 0.0000 6 6 4.2305 -0.0261 0.0005 7 6 5.7363 -0.0854 0.0017 8 6 6.2372 -0.1057 1.4228 9 8 5.4490 -0.0756 2.3441 10 7 7.5611 -0.1574 1.6701 11 6 8.6247 -0.1976 0.6501 12 6 9.8791 0.3664 1.3628 13 6 9.7123 -0.2133 2.7922 14 1 10.0873 -1.2356 2.8399 15 7 10.3915 0.6323 3.7771 16 6 11.7211 0.4408 4.0431 17 1 12.2689 -0.3338 3.5271 18 6 12.3648 1.2424 4.9759 19 7 11.6970 2.1861 5.6051 20 14 14.1783 0.9807 5.3391 21 1 14.6942 -0.1349 4.5058 22 1 14.9303 2.2219 5.0244 23 1 14.3523 0.6474 6.7759 24 6 8.1839 -0.1765 3.0017 25 1 7.9051 0.7208 3.5543 26 6 7.7363 -1.4230 3.7677 27 6 3.4804 -1.1949 0.0005 28 8 4.1094 -2.3970 0.0010 29 7 2.1585 -1.1472 0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6477 2.1357 -0.0007 34 1 4.5409 2.7969 1.0275 35 1 5.3039 2.3368 -0.5135 36 1 3.7790 3.2549 -0.5146 37 1 6.0649 -0.9887 -0.5124 38 1 6.1348 0.7899 -0.5115 39 1 8.8013 -1.2234 0.3265 40 1 8.3572 0.4275 -0.2019 41 1 10.7926 -0.0020 0.8958 42 1 9.8628 1.4562 1.3782 43 1 9.8995 1.3278 4.2407 44 1 12.1467 2.7459 6.2571 45 1 8.0134 -2.3144 3.2049 46 1 8.2218 -1.4437 4.7434 47 1 6.6547 -1.3989 3.9005 48 1 4.2914 -2.7453 0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986688578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:33 Heat of formation + Delta-G solvation = -32.583809 kcal Electronic energy + Delta-G solvation = -29083.527376 eV Core-core repulsion = 25138.805275 eV Total energy + Delta-G solvation = -3944.722101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.07326 -39.84236 -37.55171 -37.37472 -34.94789 -34.17428 -32.22205 -31.75483 -30.99656 -30.32879 -29.00587 -27.93300 -26.05699 -25.25365 -23.23958 -22.97916 -22.38358 -21.10309 -20.12820 -18.83401 -18.46786 -17.46697 -17.30103 -16.93186 -16.09720 -15.81441 -15.51614 -14.82007 -14.72057 -14.43325 -14.04592 -13.73335 -13.69709 -13.49721 -13.42484 -13.20802 -13.14314 -12.94085 -12.72167 -12.52009 -12.26487 -12.11616 -12.07347 -11.83950 -11.73392 -11.69638 -11.60372 -11.21064 -11.07893 -10.89052 -10.63478 -10.28151 -10.05495 -9.84815 -9.74400 -9.58752 -9.49695 -8.99684 -8.78203 -8.46253 -7.07762 -5.86002 -3.16583 0.80507 1.03273 2.71041 3.03967 3.28195 3.37720 3.43658 3.45843 3.65840 4.25125 4.38692 4.50840 4.61004 4.63073 4.66070 4.95397 4.97096 5.08129 5.14207 5.19544 5.22578 5.30249 5.30794 5.38101 5.43351 5.45851 5.50960 5.56253 5.61508 5.64069 5.73278 5.82944 5.87593 5.89144 6.03927 6.08038 6.10214 6.25273 6.36570 6.40265 6.53268 6.56133 6.67479 6.87419 7.32048 7.62119 7.70039 7.79072 8.27067 8.31581 9.42938 9.97112 10.31656 11.36220 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.002422 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.496106 B =11558.397550 C =11779.494196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.133 4.133 7 C -0.095 4.095 8 C 0.530 3.470 9 O -0.541 6.541 10 N -0.608 5.608 11 C 0.097 3.903 12 C -0.156 4.156 13 C 0.176 3.824 14 H 0.065 0.935 15 N -0.715 5.715 16 C -0.243 4.243 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.291 1.291 24 C 0.128 3.872 25 H 0.077 0.923 26 C -0.154 4.154 27 C 0.332 3.668 28 O -0.483 6.483 29 N -0.508 5.508 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.074 0.926 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.385 0.615 44 H 0.256 0.744 45 H 0.050 0.950 46 H 0.069 0.931 47 H 0.060 0.940 48 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.618 -2.969 -14.872 23.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.018 4.018 5 C -0.178 4.178 6 C -0.137 4.137 7 C -0.135 4.135 8 C 0.318 3.682 9 O -0.418 6.418 10 N -0.342 5.342 11 C -0.027 4.027 12 C -0.197 4.197 13 C 0.065 3.935 14 H 0.083 0.917 15 N -0.356 5.356 16 C -0.374 4.374 17 H 0.091 0.909 18 C -0.207 4.207 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.205 1.205 22 H -0.218 1.218 23 H -0.218 1.218 24 C 0.024 3.976 25 H 0.095 0.905 26 C -0.212 4.212 27 C 0.153 3.847 28 O -0.290 6.290 29 N -0.228 5.228 30 H 0.097 0.903 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.123 0.877 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.069 0.931 46 H 0.088 0.912 47 H 0.079 0.921 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -18.365 -3.762 -14.936 23.968 hybrid contribution 1.519 0.780 0.805 1.888 sum -16.846 -2.982 -14.131 22.189 Atomic orbital electron populations 1.20729 0.88584 1.03620 1.03098 1.20951 0.96672 0.87211 0.93995 1.21773 0.93868 0.99347 1.05339 1.20057 0.93722 0.94872 0.93176 1.20911 0.99870 0.93363 1.03609 1.20103 0.95487 0.92839 1.05272 1.20533 0.91644 1.05712 0.95640 1.20014 0.80839 0.76665 0.90706 1.90699 1.54425 1.50401 1.46317 1.48584 1.04705 1.72108 1.08765 1.22422 0.88204 1.00764 0.91276 1.23571 0.95359 1.01744 0.99043 1.21244 0.88155 0.95328 0.88817 0.91726 1.42353 1.08560 1.38914 1.45727 1.19237 0.85703 1.14091 1.18350 0.90928 1.24774 0.98285 0.98378 0.99268 1.69674 1.35486 1.22718 1.29850 0.86109 0.84913 0.77292 0.77786 1.20476 1.21828 1.21799 1.21887 0.94038 0.99016 0.82619 0.90536 1.22040 1.01837 0.96706 1.00618 1.18790 0.86565 0.84852 0.94481 1.84674 1.76544 1.33580 1.34225 1.66965 1.09500 1.30726 1.15604 0.90334 0.90395 0.90496 0.84512 0.89806 0.90792 0.90725 0.87315 0.87732 0.91516 0.91353 0.90520 0.90630 0.78013 0.93404 0.93064 0.91169 0.92101 0.73939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.01 0.37 -0.41 16 2 C 0.15 1.66 6.78 -82.60 -0.56 1.11 16 3 C -0.18 -1.87 9.44 -39.43 -0.37 -2.24 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.08 9.67 36.00 0.35 -0.73 16 6 C -0.13 -1.64 4.40 -104.32 -0.46 -2.10 16 7 C -0.10 -1.04 4.26 -29.04 -0.12 -1.17 16 8 C 0.53 7.55 7.64 -10.99 -0.08 7.46 16 9 O -0.54 -9.53 15.07 5.55 0.08 -9.45 16 10 N -0.61 -8.68 3.07 -163.03 -0.50 -9.18 16 11 C 0.10 1.16 6.69 -2.53 -0.02 1.14 16 12 C -0.16 -2.40 6.76 -24.59 -0.17 -2.57 16 13 C 0.18 3.24 3.11 -66.10 -0.21 3.03 16 14 H 0.06 1.20 7.84 -51.93 -0.41 0.79 16 15 N -0.72 -16.90 5.25 -51.66 -0.27 -17.17 16 16 C -0.24 -6.38 9.98 -15.06 -0.15 -6.53 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 19 N -0.93 -27.26 13.06 55.49 0.72 -26.54 16 20 Si 0.91 21.64 29.55 -169.99 -5.02 16.62 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 23 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 24 C 0.13 2.17 3.21 -66.96 -0.21 1.95 16 25 H 0.08 1.48 7.70 -51.93 -0.40 1.08 16 26 C -0.15 -2.48 9.10 37.16 0.34 -2.15 16 27 C 0.33 4.43 7.72 -17.12 -0.13 4.30 16 28 O -0.48 -5.82 12.62 -18.72 -0.24 -6.05 16 29 N -0.51 -6.91 10.30 -9.55 -0.10 -7.01 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.43 8.08 -51.93 -0.42 0.01 16 33 H 0.14 0.99 8.06 -52.48 -0.42 0.57 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.60 6.08 -51.93 -0.32 0.28 16 36 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 37 H 0.11 1.07 7.55 -51.93 -0.39 0.68 16 38 H 0.10 0.94 5.77 -51.92 -0.30 0.64 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.66 7.47 -51.93 -0.39 0.27 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.39 9.89 7.51 -40.82 -0.31 9.58 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.06 1.02 6.88 -51.93 -0.36 0.66 16 48 H 0.40 3.69 9.06 45.56 0.41 4.11 16 LS Contribution 391.95 15.07 5.91 5.91 Total: -1.00 -33.18 391.95 -8.20 -41.39 By element: Atomic # 1 Polarization: 18.15 SS G_CDS: -6.64 Total: 11.50 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.15 Total: -0.01 kcal Atomic # 7 Polarization: -59.75 SS G_CDS: -0.14 Total: -59.90 kcal Atomic # 8 Polarization: -15.35 SS G_CDS: -0.15 Total: -15.50 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.18 -8.20 -41.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986688578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.804 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds