Wall clock time and date at job start Tue Mar 31 2020 17:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38092 * 119.58007 * 2 1 4 4 C 1.38786 * 119.28622 * 179.97438 * 3 2 1 5 5 C 1.50696 * 120.75563 * 179.97438 * 4 3 2 6 6 C 1.38418 * 118.48598 * 0.02562 * 4 3 2 7 7 C 1.50693 * 120.44419 * 180.02562 * 6 4 3 8 8 C 1.50701 * 109.47625 * 89.99899 * 7 6 4 9 9 O 1.21284 * 119.99597 * 0.02562 * 8 7 6 10 10 N 1.34771 * 120.00528 * 180.02562 * 8 7 6 11 11 C 1.47428 * 125.64707 * 0.02562 * 10 8 7 12 12 C 1.54905 * 104.83308 * 155.83470 * 11 10 8 13 13 C 1.55156 * 101.58170 * 37.00861 * 12 11 10 14 14 H 1.08999 * 110.71813 * 82.86204 * 13 12 11 15 15 N 1.46499 * 110.72464 * 205.95628 * 13 12 11 16 16 C 1.36937 * 120.00235 * 273.55056 * 15 13 12 17 17 H 1.07997 * 119.99640 * 359.97438 * 16 15 13 18 18 C 1.38811 * 120.00266 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99806 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00116 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47086 * 0.02562 * 20 18 16 22 22 H 1.48493 * 109.47094 * 120.00677 * 20 18 16 23 23 H 1.48509 * 109.46889 * 240.00704 * 20 18 16 24 24 C 1.47013 * 125.65102 * 179.71765 * 10 8 7 25 25 H 1.09003 * 109.88235 * 300.51082 * 24 10 8 26 26 C 1.52998 * 109.88431 * 61.67733 * 24 10 8 27 27 C 1.38878 * 119.11524 * 359.97438 * 6 4 3 28 28 O 1.35671 * 119.68741 * 180.02562 * 27 6 4 29 29 N 1.31929 * 119.58762 * 179.72859 * 2 1 3 30 30 H 1.08999 * 109.47015 * 90.00191 * 1 2 3 31 31 H 1.09000 * 109.46646 * 209.99343 * 1 2 3 32 32 H 1.09000 * 109.47248 * 330.00061 * 1 2 3 33 33 H 1.08004 * 120.35871 * 359.95590 * 3 2 1 34 34 H 1.09000 * 109.47340 * 89.99945 * 5 4 3 35 35 H 1.09007 * 109.47327 * 210.00463 * 5 4 3 36 36 H 1.09001 * 109.47582 * 329.99855 * 5 4 3 37 37 H 1.09005 * 109.47562 * 210.00339 * 7 6 4 38 38 H 1.09008 * 109.47376 * 329.99714 * 7 6 4 39 39 H 1.09001 * 110.36557 * 274.67358 * 11 10 8 40 40 H 1.09006 * 110.36771 * 36.88620 * 11 10 8 41 41 H 1.09002 * 111.00534 * 155.08556 * 12 11 10 42 42 H 1.08999 * 111.00429 * 278.90153 * 12 11 10 43 43 H 0.96998 * 119.99916 * 93.54034 * 15 13 12 44 44 H 0.96996 * 119.99912 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.47374 * 58.54553 * 26 24 10 46 46 H 1.09007 * 109.47348 * 178.54885 * 26 24 10 47 47 H 1.08998 * 109.47287 * 298.54800 * 26 24 10 48 48 H 0.96703 * 113.99981 * 89.99988 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1887 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3538 2.4849 0.0000 6 6 4.2305 -0.0261 0.0005 7 6 5.7363 -0.0854 0.0017 8 6 6.2372 -0.1057 1.4228 9 8 5.4490 -0.0756 2.3441 10 7 7.5611 -0.1574 1.6701 11 6 8.6247 -0.1976 0.6501 12 6 9.8791 0.3664 1.3628 13 6 9.7123 -0.2133 2.7922 14 1 10.0873 -1.2356 2.8399 15 7 10.3915 0.6323 3.7771 16 6 11.7211 0.4408 4.0431 17 1 12.2689 -0.3338 3.5271 18 6 12.3648 1.2424 4.9759 19 7 11.6970 2.1861 5.6051 20 14 14.1783 0.9807 5.3391 21 1 14.6942 -0.1349 4.5058 22 1 14.9303 2.2219 5.0244 23 1 14.3523 0.6474 6.7759 24 6 8.1839 -0.1765 3.0017 25 1 7.9051 0.7208 3.5543 26 6 7.7363 -1.4230 3.7677 27 6 3.4804 -1.1949 0.0005 28 8 4.1094 -2.3970 0.0010 29 7 2.1585 -1.1472 0.0054 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3632 -0.8901 0.5137 32 1 -0.3634 0.8900 0.5138 33 1 1.6477 2.1357 -0.0007 34 1 4.5409 2.7969 1.0275 35 1 5.3039 2.3368 -0.5135 36 1 3.7790 3.2549 -0.5146 37 1 6.0649 -0.9887 -0.5124 38 1 6.1348 0.7899 -0.5115 39 1 8.8013 -1.2234 0.3265 40 1 8.3572 0.4275 -0.2019 41 1 10.7926 -0.0020 0.8958 42 1 9.8628 1.4562 1.3782 43 1 9.8995 1.3278 4.2407 44 1 12.1467 2.7459 6.2571 45 1 8.0134 -2.3144 3.2049 46 1 8.2218 -1.4437 4.7434 47 1 6.6547 -1.3989 3.9005 48 1 4.2914 -2.7453 0.8846 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986688578.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:32 Heat of formation + Delta-G solvation = -57.322419 kcal Electronic energy + Delta-G solvation = -29084.600123 eV Core-core repulsion = 25138.805275 eV Total energy + Delta-G solvation = -3945.794848 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96883 -40.99211 -38.81349 -38.25196 -35.91069 -35.79371 -33.51223 -32.88880 -32.31054 -31.41671 -30.37006 -28.66412 -26.93097 -26.83327 -24.83884 -24.05421 -23.41941 -22.02389 -21.48470 -20.05128 -19.34578 -19.10392 -18.32445 -18.07023 -17.34117 -16.79712 -16.57589 -16.32745 -15.83777 -15.44902 -15.43710 -15.12004 -14.75980 -14.60530 -14.47188 -14.25985 -14.04748 -13.84783 -13.82443 -13.57025 -13.31387 -13.18751 -13.12281 -12.94201 -12.87256 -12.76532 -12.67338 -12.54128 -12.46739 -12.44616 -12.13001 -12.05987 -11.71156 -11.53333 -10.98597 -10.88375 -10.44306 -10.38317 -9.65901 -9.62181 -9.02074 -7.94163 -5.23799 -0.03404 0.19738 1.49406 1.49990 1.59725 1.61061 1.93759 2.42944 2.57610 2.83101 3.37507 3.44844 3.54770 3.67264 3.77582 3.80591 3.87803 3.88582 4.06876 4.19480 4.23647 4.34296 4.38855 4.44021 4.44876 4.53092 4.56132 4.64542 4.66969 4.72072 4.75075 4.79595 4.81851 4.94755 4.99873 5.05119 5.10612 5.21762 5.22205 5.25743 5.32102 5.35667 5.47698 5.56079 5.63729 6.26630 6.48992 6.58617 6.95103 7.14794 7.33041 8.05428 8.28655 9.29591 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025741 B = 0.002422 C = 0.002376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1087.496106 B =11558.397550 C =11779.494196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.022 4.022 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.083 4.083 8 C 0.530 3.470 9 O -0.580 6.580 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.148 4.148 13 C 0.169 3.831 14 H 0.068 0.932 15 N -0.730 5.730 16 C -0.232 4.232 17 H 0.083 0.917 18 C -0.077 4.077 19 N -0.972 5.972 20 Si 0.972 3.028 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.298 1.298 24 C 0.135 3.865 25 H 0.043 0.957 26 C -0.144 4.144 27 C 0.311 3.689 28 O -0.489 6.489 29 N -0.539 5.539 30 H 0.093 0.907 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.094 0.906 40 H 0.103 0.897 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.805 -3.291 -17.528 25.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.002 4.002 3 C -0.204 4.204 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.153 4.153 7 C -0.122 4.122 8 C 0.321 3.679 9 O -0.460 6.460 10 N -0.340 5.340 11 C -0.019 4.019 12 C -0.189 4.189 13 C 0.060 3.940 14 H 0.086 0.914 15 N -0.369 5.369 16 C -0.364 4.364 17 H 0.101 0.899 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.801 3.199 21 H -0.186 1.186 22 H -0.223 1.223 23 H -0.226 1.226 24 C 0.031 3.969 25 H 0.062 0.938 26 C -0.202 4.202 27 C 0.132 3.868 28 O -0.298 6.298 29 N -0.260 5.260 30 H 0.111 0.889 31 H 0.089 0.911 32 H 0.118 0.882 33 H 0.185 0.815 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.112 0.888 40 H 0.121 0.879 41 H 0.106 0.894 42 H 0.075 0.925 43 H 0.202 0.798 44 H 0.058 0.942 45 H 0.088 0.912 46 H 0.073 0.927 47 H 0.070 0.930 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -18.550 -4.134 -17.661 25.944 hybrid contribution 1.454 0.847 1.600 2.322 sum -17.096 -3.287 -16.061 23.686 Atomic orbital electron populations 1.20825 0.86328 1.04368 1.04238 1.21595 0.98317 0.87066 0.93252 1.22150 0.93838 1.00268 1.04116 1.20447 0.94501 0.95378 0.92587 1.20952 1.00553 0.92934 1.03092 1.20264 0.96099 0.92984 1.05910 1.20515 0.90970 1.07613 0.93134 1.20613 0.80178 0.75385 0.91774 1.90688 1.55366 1.52033 1.47894 1.48603 1.05371 1.72069 1.07994 1.22579 0.85463 1.02884 0.90982 1.23377 0.97892 1.00600 0.96990 1.21448 0.88485 0.94711 0.89393 0.91364 1.42530 1.08071 1.39345 1.46967 1.19638 0.86779 1.13024 1.16966 0.89876 1.25566 1.02304 0.98927 1.00128 1.69835 1.36993 1.24279 1.31125 0.85091 0.80306 0.77318 0.77151 1.18553 1.22326 1.22594 1.21554 0.93394 0.97855 0.84141 0.93843 1.21928 1.01003 0.97186 1.00073 1.19062 0.86914 0.85440 0.95351 1.84633 1.76511 1.33563 1.35060 1.66992 1.09957 1.32198 1.16836 0.88872 0.91125 0.88250 0.81545 0.91265 0.89807 0.88319 0.85683 0.85221 0.88825 0.87858 0.89363 0.92458 0.79759 0.94157 0.91175 0.92690 0.92953 0.73057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.17 71.24 0.72 -0.62 16 2 C 0.13 2.85 6.78 42.51 0.29 3.14 16 3 C -0.18 -3.39 9.44 22.37 0.21 -3.18 16 4 C -0.02 -0.44 5.91 -19.69 -0.12 -0.56 16 5 C -0.12 -1.84 9.67 71.23 0.69 -1.15 16 6 C -0.15 -3.44 4.40 -19.67 -0.09 -3.53 16 7 C -0.08 -1.60 4.26 29.10 0.12 -1.48 16 8 C 0.53 14.35 7.64 87.66 0.67 15.02 16 9 O -0.58 -20.46 15.07 -3.04 -0.05 -20.50 16 10 N -0.61 -16.28 3.07 -788.08 -2.42 -18.70 16 11 C 0.10 2.10 6.69 86.85 0.58 2.68 16 12 C -0.15 -4.24 6.76 31.98 0.22 -4.02 16 13 C 0.17 6.10 3.11 46.18 0.14 6.24 16 14 H 0.07 2.43 7.84 -2.39 -0.02 2.41 16 15 N -0.73 -35.00 5.25 -317.35 -1.67 -36.67 16 16 C -0.23 -12.19 9.98 84.03 0.84 -11.35 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 18 C -0.08 -4.30 5.50 84.86 0.47 -3.83 16 19 N -0.97 -58.63 13.06 21.65 0.28 -58.35 16 20 Si 0.97 44.81 29.55 68.60 2.03 46.83 16 21 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 22 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.28 16 24 C 0.14 4.58 3.21 45.34 0.15 4.73 16 25 H 0.04 1.76 7.70 -2.39 -0.02 1.75 16 26 C -0.14 -4.66 9.10 71.98 0.66 -4.00 16 27 C 0.31 8.12 7.72 84.78 0.65 8.78 16 28 O -0.49 -11.54 12.62 -89.88 -1.13 -12.68 16 29 N -0.54 -14.49 10.30 -296.98 -3.06 -17.54 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.85 8.08 -2.39 -0.02 0.84 16 33 H 0.17 1.91 8.06 -2.91 -0.02 1.88 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.08 1.10 6.08 -2.38 -0.01 1.08 16 36 H 0.10 1.02 8.10 -2.39 -0.02 1.00 16 37 H 0.13 2.04 7.55 -2.38 -0.02 2.03 16 38 H 0.13 1.84 5.77 -2.38 -0.01 1.83 16 39 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 40 H 0.10 1.48 7.47 -2.38 -0.02 1.46 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.37 19.77 7.51 -92.71 -0.70 19.08 16 44 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 45 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 47 H 0.05 1.78 6.88 -2.39 -0.02 1.76 16 48 H 0.41 7.54 9.06 -74.06 -0.67 6.87 16 Total: -1.00 -74.53 391.95 -0.18 -74.71 By element: Atomic # 1 Polarization: 36.40 SS G_CDS: -0.38 Total: 36.02 kcal Atomic # 6 Polarization: 0.66 SS G_CDS: 6.20 Total: 6.86 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -6.86 Total: -131.26 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -1.18 Total: -33.18 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Total: -74.53 -0.18 -74.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986688578.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.390 kcal (2) G-P(sol) polarization free energy of solvation -74.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds