Wall clock time and date at job start Tue Mar 31 2020 17:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38087 * 119.58415 * 2 1 4 4 C 1.38792 * 119.28452 * 179.71173 * 3 2 1 5 5 C 1.50701 * 120.75699 * 180.28557 * 4 3 2 6 6 C 1.38420 * 118.48397 * 0.54895 * 4 3 2 7 7 C 1.50702 * 120.44477 * 179.71086 * 6 4 3 8 8 C 1.50695 * 109.47241 * 270.02770 * 7 6 4 9 9 O 1.21281 * 119.99879 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00190 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64957 * 359.68992 * 10 8 7 12 12 C 1.54683 * 104.94325 * 204.07478 * 11 10 8 13 13 C 1.55157 * 101.67843 * 323.27408 * 12 11 10 14 14 H 1.08999 * 110.72232 * 276.97506 * 13 12 11 15 15 N 1.46504 * 110.71812 * 153.69792 * 13 12 11 16 16 C 1.36934 * 119.99627 * 91.48049 * 15 13 12 17 17 H 1.08001 * 120.00372 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99799 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00324 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46930 * 90.00247 * 20 18 16 22 22 H 1.48503 * 109.47469 * 210.00008 * 20 18 16 23 23 H 1.48496 * 109.47341 * 330.00390 * 20 18 16 24 24 C 1.47024 * 125.65081 * 179.97438 * 10 8 7 25 25 H 1.09010 * 109.87762 * 59.33230 * 24 10 8 26 26 C 1.52999 * 109.88209 * 298.32293 * 24 10 8 27 27 C 1.38875 * 119.11476 * 359.73839 * 6 4 3 28 28 O 1.35680 * 119.68421 * 179.97438 * 27 6 4 29 29 N 1.31938 * 119.58031 * 180.27429 * 2 1 3 30 30 H 1.08999 * 109.47015 * 269.72955 * 1 2 3 31 31 H 1.09000 * 109.46646 * 29.72108 * 1 2 3 32 32 H 1.09000 * 109.47248 * 149.72825 * 1 2 3 33 33 H 1.07998 * 120.35885 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.46792 * 270.27168 * 5 4 3 35 35 H 1.09000 * 109.46874 * 30.27339 * 5 4 3 36 36 H 1.08996 * 109.47178 * 150.27200 * 5 4 3 37 37 H 1.09000 * 109.46695 * 30.02367 * 7 6 4 38 38 H 1.08998 * 109.47032 * 150.02459 * 7 6 4 39 39 H 1.09008 * 110.36507 * 323.00688 * 11 10 8 40 40 H 1.09000 * 110.36437 * 85.32268 * 11 10 8 41 41 H 1.09009 * 111.10166 * 205.10785 * 12 11 10 42 42 H 1.09003 * 110.85110 * 81.33618 * 12 11 10 43 43 H 0.96996 * 119.99743 * 271.48047 * 15 13 12 44 44 H 0.96996 * 120.00551 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47167 * 61.45492 * 26 24 10 46 46 H 1.08999 * 109.46841 * 181.45139 * 26 24 10 47 47 H 1.08995 * 109.47016 * 301.45173 * 26 24 10 48 48 H 0.96694 * 113.99768 * 269.97638 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5767 1.1936 0.0061 5 6 4.3541 2.4846 0.0127 6 6 4.2305 -0.0264 0.0003 7 6 5.7363 -0.0858 0.0000 8 6 6.2383 -0.0983 -1.4208 9 8 5.4508 -0.0629 -2.3425 10 7 7.5623 -0.1487 -1.6674 11 6 8.6255 -0.1888 -0.6468 12 6 9.8802 0.3734 -1.3556 13 6 9.7145 -0.1988 -2.7882 14 1 10.0894 -1.2209 -2.8411 15 7 10.3909 0.6543 -3.7685 16 6 11.6924 0.4032 -4.1121 17 1 12.2202 -0.4240 -3.6607 18 6 12.3332 1.2112 -5.0413 19 7 11.6900 2.2189 -5.5917 20 14 14.1085 0.8682 -5.5105 21 1 14.1438 -0.0636 -6.6662 22 1 14.7776 2.1413 -5.8806 23 1 14.8155 0.2543 -4.3580 24 6 8.1860 -0.1668 -2.9987 25 1 7.9044 0.7291 -3.5521 26 6 7.7398 -1.4134 -3.7653 27 6 3.4803 -1.1951 -0.0057 28 8 4.1092 -2.3973 -0.0120 29 7 2.1584 -1.1474 -0.0055 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3632 0.8925 -0.5095 32 1 -0.3634 -0.8875 -0.5180 33 1 1.6479 2.1356 -0.0004 34 1 4.5418 2.8009 -1.0133 35 1 3.7789 3.2524 0.5302 36 1 5.3037 2.3342 0.5261 37 1 6.1344 0.7865 0.5183 38 1 6.0643 -0.9921 0.5092 39 1 8.3578 0.4370 0.2046 40 1 8.8026 -1.2147 -0.3238 41 1 10.7933 0.0024 -0.8899 42 1 9.8644 1.4632 -1.3659 43 1 9.9168 1.3969 -4.1741 44 1 12.1376 2.7833 -6.2413 45 1 6.6583 -1.3902 -3.8988 46 1 8.2259 -1.4334 -4.7407 47 1 8.0175 -2.3047 -3.2027 48 1 4.2912 -2.7413 -0.8971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986688582.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:38 Heat of formation + Delta-G solvation = -32.785068 kcal Electronic energy + Delta-G solvation = -29082.453820 eV Core-core repulsion = 25137.722992 eV Total energy + Delta-G solvation = -3944.730828 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.07020 -39.83696 -37.54813 -37.37217 -34.94478 -34.17368 -32.21906 -31.75108 -31.00214 -30.32954 -29.01172 -27.93197 -26.05503 -25.25607 -23.23422 -22.96291 -22.37925 -21.10299 -20.13903 -18.81879 -18.46203 -17.46502 -17.31773 -16.93771 -16.08752 -15.81352 -15.51776 -14.81188 -14.71977 -14.43304 -14.04597 -13.73195 -13.68831 -13.49188 -13.43221 -13.21011 -13.14154 -12.93731 -12.71663 -12.51870 -12.22787 -12.10961 -12.05560 -11.85120 -11.73138 -11.70453 -11.60057 -11.21451 -11.07549 -10.86818 -10.64131 -10.28874 -10.08361 -9.85069 -9.74157 -9.58756 -9.49417 -8.99455 -8.77972 -8.45521 -7.08311 -5.86009 -3.16674 0.80831 1.03358 2.71605 3.04508 3.28349 3.38093 3.43569 3.45116 3.66150 4.25304 4.38829 4.50911 4.61509 4.63334 4.66363 4.95561 4.97413 5.08311 5.14323 5.19963 5.22973 5.30296 5.30849 5.38275 5.44047 5.46158 5.51125 5.56417 5.62092 5.64569 5.74430 5.83136 5.87750 5.89824 6.04558 6.08153 6.10362 6.24791 6.36767 6.40867 6.53644 6.56470 6.68626 6.86351 7.32110 7.61381 7.70800 7.79292 8.27619 8.31557 9.42775 9.96833 10.31424 11.36086 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.002422 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.591564 B =11558.043742 C =11777.028264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.149 3.851 3 C -0.183 4.183 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.133 4.133 7 C -0.095 4.095 8 C 0.530 3.470 9 O -0.541 6.541 10 N -0.608 5.608 11 C 0.097 3.903 12 C -0.157 4.157 13 C 0.177 3.823 14 H 0.068 0.932 15 N -0.714 5.714 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.010 4.010 19 N -0.930 5.930 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.126 3.874 25 H 0.076 0.924 26 C -0.153 4.153 27 C 0.332 3.668 28 O -0.483 6.483 29 N -0.508 5.508 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.386 0.614 44 H 0.257 0.743 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.050 0.950 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.500 -2.951 14.924 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.012 3.988 3 C -0.203 4.203 4 C -0.018 4.018 5 C -0.177 4.177 6 C -0.137 4.137 7 C -0.135 4.135 8 C 0.318 3.682 9 O -0.418 6.418 10 N -0.342 5.342 11 C -0.026 4.026 12 C -0.198 4.198 13 C 0.065 3.935 14 H 0.086 0.914 15 N -0.354 5.354 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.206 4.206 19 N -0.577 5.577 20 Si 0.739 3.261 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.022 3.978 25 H 0.094 0.906 26 C -0.212 4.212 27 C 0.153 3.847 28 O -0.290 6.290 29 N -0.228 5.228 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.155 0.845 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.123 0.877 38 H 0.127 0.873 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.220 0.780 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.088 0.912 47 H 0.069 0.931 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -18.244 -3.738 14.977 23.898 hybrid contribution 1.493 0.737 -0.846 1.868 sum -16.751 -3.001 14.130 22.119 Atomic orbital electron populations 1.20728 0.88584 1.03611 1.03101 1.20952 0.96671 0.87211 0.94005 1.21771 0.93869 0.99345 1.05337 1.20061 0.93723 0.94869 0.93183 1.20909 0.99865 0.93368 1.03604 1.20106 0.95493 0.92825 1.05277 1.20532 0.91633 1.05704 0.95662 1.20012 0.80853 0.76676 0.90696 1.90698 1.54482 1.50386 1.46283 1.48592 1.04680 1.72095 1.08802 1.22369 0.88225 1.00759 0.91276 1.23542 0.95399 1.01735 0.99140 1.21239 0.88177 0.95359 0.88744 0.91449 1.42346 1.11788 1.33840 1.47408 1.19208 0.88130 1.10995 1.19215 0.90967 1.24772 0.98488 0.97900 0.99487 1.69660 1.36577 1.19408 1.32085 0.86178 0.84508 0.77030 0.78363 1.21624 1.21746 1.20678 1.21968 0.94244 0.99007 0.82565 0.90583 1.22032 1.01801 0.96700 1.00624 1.18788 0.86568 0.84838 0.94498 1.84673 1.76548 1.33636 1.34167 1.66967 1.09497 1.30713 1.15619 0.90338 0.90497 0.90396 0.84513 0.89804 0.90728 0.90796 0.87743 0.87321 0.91360 0.91534 0.90475 0.90704 0.77996 0.93342 0.92143 0.91168 0.93102 0.73936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.17 36.01 0.37 -0.41 16 2 C 0.15 1.67 6.78 -82.60 -0.56 1.11 16 3 C -0.18 -1.87 9.44 -39.43 -0.37 -2.24 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.08 9.67 36.01 0.35 -0.73 16 6 C -0.13 -1.64 4.40 -104.32 -0.46 -2.10 16 7 C -0.10 -1.05 4.26 -29.04 -0.12 -1.17 16 8 C 0.53 7.56 7.64 -10.99 -0.08 7.48 16 9 O -0.54 -9.56 15.08 5.56 0.08 -9.48 16 10 N -0.61 -8.70 3.07 -163.15 -0.50 -9.20 16 11 C 0.10 1.16 6.68 -2.65 -0.02 1.15 16 12 C -0.16 -2.40 6.76 -24.70 -0.17 -2.57 16 13 C 0.18 3.25 3.14 -66.09 -0.21 3.04 16 14 H 0.07 1.24 7.80 -51.93 -0.41 0.84 16 15 N -0.71 -16.86 5.22 -51.65 -0.27 -17.13 16 16 C -0.24 -6.42 9.96 -15.06 -0.15 -6.57 16 17 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 18 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 19 N -0.93 -27.25 13.06 55.49 0.72 -26.53 16 20 Si 0.91 21.63 29.55 -169.99 -5.02 16.61 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 C 0.13 2.14 3.21 -66.95 -0.21 1.92 16 25 H 0.08 1.48 7.72 -51.92 -0.40 1.08 16 26 C -0.15 -2.49 9.10 37.16 0.34 -2.15 16 27 C 0.33 4.44 7.72 -17.12 -0.13 4.31 16 28 O -0.48 -5.83 12.62 -18.74 -0.24 -6.07 16 29 N -0.51 -6.92 10.30 -9.55 -0.10 -7.02 16 30 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.00 8.06 -52.49 -0.42 0.57 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.07 0.50 8.10 -51.93 -0.42 0.08 16 36 H 0.07 0.60 6.08 -51.93 -0.32 0.28 16 37 H 0.10 0.94 5.77 -51.93 -0.30 0.64 16 38 H 0.11 1.07 7.55 -51.93 -0.39 0.68 16 39 H 0.07 0.66 7.48 -51.92 -0.39 0.27 16 40 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.08 1.13 8.14 -51.92 -0.42 0.71 16 42 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 43 H 0.39 9.89 7.57 -40.82 -0.31 9.58 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.06 1.01 6.89 -51.93 -0.36 0.66 16 46 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 47 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 48 H 0.40 3.70 9.06 45.56 0.41 4.12 16 LS Contribution 391.99 15.07 5.91 5.91 Total: -1.00 -33.16 391.99 -8.21 -41.36 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -6.65 Total: 11.60 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.15 Total: -0.06 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.14 Total: -59.88 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.15 Total: -15.54 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.16 -8.21 -41.36 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986688582.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.579 kcal (2) G-P(sol) polarization free energy of solvation -33.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds