Wall clock time and date at job start Tue Mar 31 2020 17:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38087 * 119.58415 * 2 1 4 4 C 1.38792 * 119.28452 * 179.71173 * 3 2 1 5 5 C 1.50701 * 120.75699 * 180.28557 * 4 3 2 6 6 C 1.38420 * 118.48397 * 0.54895 * 4 3 2 7 7 C 1.50702 * 120.44477 * 179.71086 * 6 4 3 8 8 C 1.50695 * 109.47241 * 270.02770 * 7 6 4 9 9 O 1.21281 * 119.99879 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00190 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64957 * 359.68992 * 10 8 7 12 12 C 1.54683 * 104.94325 * 204.07478 * 11 10 8 13 13 C 1.55157 * 101.67843 * 323.27408 * 12 11 10 14 14 H 1.08999 * 110.72232 * 276.97506 * 13 12 11 15 15 N 1.46504 * 110.71812 * 153.69792 * 13 12 11 16 16 C 1.36934 * 119.99627 * 91.48049 * 15 13 12 17 17 H 1.08001 * 120.00372 * 0.02562 * 16 15 13 18 18 C 1.38810 * 119.99799 * 179.97438 * 16 15 13 19 19 N 1.31620 * 120.00324 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00052 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46930 * 90.00247 * 20 18 16 22 22 H 1.48503 * 109.47469 * 210.00008 * 20 18 16 23 23 H 1.48496 * 109.47341 * 330.00390 * 20 18 16 24 24 C 1.47024 * 125.65081 * 179.97438 * 10 8 7 25 25 H 1.09010 * 109.87762 * 59.33230 * 24 10 8 26 26 C 1.52999 * 109.88209 * 298.32293 * 24 10 8 27 27 C 1.38875 * 119.11476 * 359.73839 * 6 4 3 28 28 O 1.35680 * 119.68421 * 179.97438 * 27 6 4 29 29 N 1.31938 * 119.58031 * 180.27429 * 2 1 3 30 30 H 1.08999 * 109.47015 * 269.72955 * 1 2 3 31 31 H 1.09000 * 109.46646 * 29.72108 * 1 2 3 32 32 H 1.09000 * 109.47248 * 149.72825 * 1 2 3 33 33 H 1.07998 * 120.35885 * 359.97438 * 3 2 1 34 34 H 1.08998 * 109.46792 * 270.27168 * 5 4 3 35 35 H 1.09000 * 109.46874 * 30.27339 * 5 4 3 36 36 H 1.08996 * 109.47178 * 150.27200 * 5 4 3 37 37 H 1.09000 * 109.46695 * 30.02367 * 7 6 4 38 38 H 1.08998 * 109.47032 * 150.02459 * 7 6 4 39 39 H 1.09008 * 110.36507 * 323.00688 * 11 10 8 40 40 H 1.09000 * 110.36437 * 85.32268 * 11 10 8 41 41 H 1.09009 * 111.10166 * 205.10785 * 12 11 10 42 42 H 1.09003 * 110.85110 * 81.33618 * 12 11 10 43 43 H 0.96996 * 119.99743 * 271.48047 * 15 13 12 44 44 H 0.96996 * 120.00551 * 180.02562 * 19 18 16 45 45 H 1.08998 * 109.47167 * 61.45492 * 26 24 10 46 46 H 1.08999 * 109.46841 * 181.45139 * 26 24 10 47 47 H 1.08995 * 109.47016 * 301.45173 * 26 24 10 48 48 H 0.96694 * 113.99768 * 269.97638 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5767 1.1936 0.0061 5 6 4.3541 2.4846 0.0127 6 6 4.2305 -0.0264 0.0003 7 6 5.7363 -0.0858 0.0000 8 6 6.2383 -0.0983 -1.4208 9 8 5.4508 -0.0629 -2.3425 10 7 7.5623 -0.1487 -1.6674 11 6 8.6255 -0.1888 -0.6468 12 6 9.8802 0.3734 -1.3556 13 6 9.7145 -0.1988 -2.7882 14 1 10.0894 -1.2209 -2.8411 15 7 10.3909 0.6543 -3.7685 16 6 11.6924 0.4032 -4.1121 17 1 12.2202 -0.4240 -3.6607 18 6 12.3332 1.2112 -5.0413 19 7 11.6900 2.2189 -5.5917 20 14 14.1085 0.8682 -5.5105 21 1 14.1438 -0.0636 -6.6662 22 1 14.7776 2.1413 -5.8806 23 1 14.8155 0.2543 -4.3580 24 6 8.1860 -0.1668 -2.9987 25 1 7.9044 0.7291 -3.5521 26 6 7.7398 -1.4134 -3.7653 27 6 3.4803 -1.1951 -0.0057 28 8 4.1092 -2.3973 -0.0120 29 7 2.1584 -1.1474 -0.0055 30 1 -0.3633 -0.0049 1.0277 31 1 -0.3632 0.8925 -0.5095 32 1 -0.3634 -0.8875 -0.5180 33 1 1.6479 2.1356 -0.0004 34 1 4.5418 2.8009 -1.0133 35 1 3.7789 3.2524 0.5302 36 1 5.3037 2.3342 0.5261 37 1 6.1344 0.7865 0.5183 38 1 6.0643 -0.9921 0.5092 39 1 8.3578 0.4370 0.2046 40 1 8.8026 -1.2147 -0.3238 41 1 10.7933 0.0024 -0.8899 42 1 9.8644 1.4632 -1.3659 43 1 9.9168 1.3969 -4.1741 44 1 12.1376 2.7833 -6.2413 45 1 6.6583 -1.3902 -3.8988 46 1 8.2259 -1.4334 -4.7407 47 1 8.0175 -2.3047 -3.2027 48 1 4.2912 -2.7413 -0.8971 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986688582.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:38 Heat of formation + Delta-G solvation = -57.504447 kcal Electronic energy + Delta-G solvation = -29083.525733 eV Core-core repulsion = 25137.722992 eV Total energy + Delta-G solvation = -3945.802741 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.96747 -40.98899 -38.81100 -38.25164 -35.91054 -35.79259 -33.50904 -32.88962 -32.31340 -31.42357 -30.37394 -28.66438 -26.93119 -26.83517 -24.82840 -24.04818 -23.41582 -22.02645 -21.49252 -20.03098 -19.34238 -19.13075 -18.32679 -18.07057 -17.33054 -16.79703 -16.57841 -16.33000 -15.83272 -15.45266 -15.42939 -15.12276 -14.77324 -14.59553 -14.46826 -14.25646 -14.03814 -13.84601 -13.82171 -13.52518 -13.32600 -13.18870 -13.12182 -12.93962 -12.87199 -12.76159 -12.64893 -12.54197 -12.47182 -12.44603 -12.17464 -12.07553 -11.71557 -11.53513 -10.98518 -10.87523 -10.44376 -10.38202 -9.65467 -9.62212 -9.02273 -7.94103 -5.23795 -0.03267 0.19641 1.49529 1.50728 1.58881 1.61329 1.94297 2.42736 2.57679 2.83211 3.37160 3.44874 3.56028 3.67259 3.77996 3.80615 3.87713 3.88648 4.07731 4.20096 4.23714 4.34499 4.39438 4.43878 4.44992 4.53519 4.56177 4.64574 4.67242 4.72185 4.75280 4.79582 4.81859 4.94411 4.99874 5.05639 5.10632 5.21758 5.22233 5.26370 5.32127 5.35830 5.47383 5.55447 5.63741 6.26431 6.48870 6.59089 6.95139 7.15150 7.32926 8.05336 8.28624 9.29375 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025668 B = 0.002422 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.591564 B =11558.043742 C =11777.028264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.184 4.184 4 C -0.022 4.022 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.083 4.083 8 C 0.530 3.470 9 O -0.580 6.580 10 N -0.607 5.607 11 C 0.103 3.897 12 C -0.148 4.148 13 C 0.170 3.830 14 H 0.071 0.929 15 N -0.729 5.729 16 C -0.235 4.235 17 H 0.083 0.917 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.290 1.290 22 H -0.300 1.300 23 H -0.265 1.265 24 C 0.133 3.867 25 H 0.042 0.958 26 C -0.143 4.143 27 C 0.311 3.689 28 O -0.489 6.489 29 N -0.539 5.539 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.070 0.930 33 H 0.167 0.833 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.130 0.870 38 H 0.125 0.875 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.057 0.943 43 H 0.371 0.629 44 H 0.250 0.750 45 H 0.051 0.949 46 H 0.054 0.946 47 H 0.069 0.931 48 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.682 -3.300 17.542 25.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.002 4.002 3 C -0.204 4.204 4 C -0.029 4.029 5 C -0.175 4.175 6 C -0.153 4.153 7 C -0.122 4.122 8 C 0.320 3.680 9 O -0.460 6.460 10 N -0.340 5.340 11 C -0.019 4.019 12 C -0.189 4.189 13 C 0.060 3.940 14 H 0.089 0.911 15 N -0.368 5.368 16 C -0.367 4.367 17 H 0.101 0.899 18 C -0.269 4.269 19 N -0.622 5.622 20 Si 0.801 3.199 21 H -0.218 1.218 22 H -0.227 1.227 23 H -0.189 1.189 24 C 0.028 3.972 25 H 0.061 0.939 26 C -0.202 4.202 27 C 0.132 3.868 28 O -0.298 6.298 29 N -0.260 5.260 30 H 0.111 0.889 31 H 0.118 0.882 32 H 0.089 0.911 33 H 0.185 0.815 34 H 0.087 0.913 35 H 0.117 0.883 36 H 0.102 0.898 37 H 0.148 0.852 38 H 0.143 0.857 39 H 0.121 0.879 40 H 0.112 0.888 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.203 0.797 44 H 0.059 0.941 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges -18.425 -4.138 17.664 25.858 hybrid contribution 1.427 0.812 -1.629 2.313 sum -16.998 -3.326 16.035 23.604 Atomic orbital electron populations 1.20824 0.86326 1.04373 1.04232 1.21596 0.98317 0.87064 0.93258 1.22148 0.93842 1.00267 1.04119 1.20452 0.94501 0.95375 0.92587 1.20950 1.00550 0.92929 1.03092 1.20268 0.96106 0.92971 1.05918 1.20514 0.90955 1.07608 0.93148 1.20612 0.80193 0.75392 0.91768 1.90687 1.55431 1.52028 1.47868 1.48609 1.05353 1.72050 1.08028 1.22532 0.85496 1.02890 0.90979 1.23348 0.97914 1.00644 0.97011 1.21446 0.88445 0.94751 0.89371 0.91085 1.42518 1.11351 1.34213 1.48682 1.19621 0.89063 1.10153 1.17823 0.89892 1.25566 1.02414 0.98391 1.00485 1.69825 1.38083 1.20924 1.33360 0.85158 0.80172 0.76284 0.78252 1.21776 1.22657 1.18928 1.21623 0.93631 0.97808 0.84089 0.93949 1.21920 1.00955 0.97216 1.00060 1.19061 0.86919 0.85426 0.95369 1.84632 1.76516 1.33620 1.35002 1.66994 1.09951 1.32185 1.16850 0.88881 0.88245 0.91122 0.81548 0.91266 0.88319 0.89803 0.85217 0.85692 0.87861 0.88838 0.89292 0.92466 0.79739 0.94139 0.93009 0.92744 0.91173 0.73056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.17 71.24 0.72 -0.62 16 2 C 0.13 2.86 6.78 42.51 0.29 3.14 16 3 C -0.18 -3.40 9.44 22.37 0.21 -3.19 16 4 C -0.02 -0.44 5.91 -19.69 -0.12 -0.56 16 5 C -0.12 -1.84 9.67 71.24 0.69 -1.15 16 6 C -0.15 -3.45 4.40 -19.67 -0.09 -3.54 16 7 C -0.08 -1.60 4.26 29.10 0.12 -1.48 16 8 C 0.53 14.39 7.64 87.66 0.67 15.06 16 9 O -0.58 -20.54 15.08 -3.03 -0.05 -20.58 16 10 N -0.61 -16.32 3.07 -788.48 -2.42 -18.73 16 11 C 0.10 2.10 6.68 86.78 0.58 2.68 16 12 C -0.15 -4.24 6.76 31.91 0.22 -4.02 16 13 C 0.17 6.11 3.14 46.18 0.15 6.26 16 14 H 0.07 2.52 7.80 -2.39 -0.02 2.50 16 15 N -0.73 -34.95 5.22 -317.32 -1.66 -36.61 16 16 C -0.23 -12.34 9.96 84.03 0.84 -11.50 16 17 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 18 C -0.08 -4.25 5.50 84.86 0.47 -3.79 16 19 N -0.97 -58.59 13.06 21.65 0.28 -58.31 16 20 Si 0.97 44.80 29.55 68.60 2.03 46.82 16 21 H -0.29 -13.31 7.11 99.48 0.71 -12.60 16 22 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 23 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 24 C 0.13 4.54 3.21 45.34 0.15 4.68 16 25 H 0.04 1.73 7.72 -2.38 -0.02 1.71 16 26 C -0.14 -4.67 9.10 71.98 0.66 -4.01 16 27 C 0.31 8.14 7.72 84.78 0.65 8.79 16 28 O -0.49 -11.57 12.62 -89.98 -1.14 -12.71 16 29 N -0.54 -14.51 10.30 -296.97 -3.06 -17.57 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.10 0.86 8.07 -2.39 -0.02 0.84 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.17 1.92 8.06 -2.91 -0.02 1.89 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 1.02 8.10 -2.39 -0.02 1.00 16 36 H 0.08 1.10 6.08 -2.39 -0.01 1.08 16 37 H 0.13 1.84 5.77 -2.39 -0.01 1.83 16 38 H 0.13 2.05 7.55 -2.39 -0.02 2.03 16 39 H 0.10 1.48 7.48 -2.38 -0.02 1.46 16 40 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.09 2.34 8.14 -2.38 -0.02 2.33 16 42 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 43 H 0.37 19.78 7.57 -92.71 -0.70 19.07 16 44 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 45 H 0.05 1.77 6.89 -2.39 -0.02 1.75 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.41 7.57 9.06 -74.06 -0.67 6.90 16 Total: -1.00 -74.52 391.99 -0.18 -74.71 By element: Atomic # 1 Polarization: 36.62 SS G_CDS: -0.38 Total: 36.24 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.20 Total: 6.74 kcal Atomic # 7 Polarization: -124.37 SS G_CDS: -6.85 Total: -131.22 kcal Atomic # 8 Polarization: -32.11 SS G_CDS: -1.18 Total: -33.29 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.52 -0.18 -74.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986688582.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.201 kcal (2) G-P(sol) polarization free energy of solvation -74.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds