Wall clock time and date at job start Tue Mar 31 2020 17:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38093 * 119.57911 * 2 1 4 4 C 1.38782 * 119.28607 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.76220 * 179.97438 * 4 3 2 6 6 C 1.38423 * 118.48510 * 359.97438 * 4 3 2 7 7 C 1.50704 * 120.44360 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47373 * 270.02479 * 7 6 4 9 9 O 1.21282 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00163 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64469 * 359.69443 * 10 8 7 12 12 C 1.55130 * 104.71902 * 155.81694 * 11 10 8 13 13 H 1.08992 * 111.19080 * 279.18723 * 12 11 10 14 14 N 1.46500 * 110.93615 * 155.28575 * 12 11 10 15 15 C 1.36942 * 119.99627 * 92.95841 * 14 12 11 16 16 H 1.08001 * 120.00367 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99848 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47189 * 60.00600 * 19 17 15 21 21 H 1.48507 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47510 * 300.00453 * 19 17 15 23 23 C 1.55152 * 101.48736 * 37.29281 * 12 11 10 24 24 C 1.47015 * 125.65044 * 180.02562 * 10 8 7 25 25 H 1.09005 * 109.88496 * 61.44965 * 24 10 8 26 26 C 1.53005 * 109.88163 * 300.44354 * 24 10 8 27 27 C 1.38872 * 119.11479 * 0.02562 * 6 4 3 28 28 O 1.35677 * 119.68503 * 180.02562 * 27 6 4 29 29 N 1.31933 * 119.58506 * 180.28637 * 2 1 3 30 30 H 1.08992 * 109.46898 * 90.00432 * 1 2 3 31 31 H 1.09004 * 109.46861 * 210.00504 * 1 2 3 32 32 H 1.08993 * 109.47576 * 330.00236 * 1 2 3 33 33 H 1.07997 * 120.36190 * 0.03714 * 3 2 1 34 34 H 1.09000 * 109.47032 * 270.02627 * 5 4 3 35 35 H 1.09006 * 109.46974 * 30.01558 * 5 4 3 36 36 H 1.08992 * 109.47803 * 150.01778 * 5 4 3 37 37 H 1.08997 * 109.46964 * 30.02855 * 7 6 4 38 38 H 1.09000 * 109.46945 * 150.02584 * 7 6 4 39 39 H 1.09000 * 110.36532 * 274.74314 * 11 10 8 40 40 H 1.08997 * 110.36857 * 37.06603 * 11 10 8 41 41 H 0.96998 * 120.00165 * 272.95257 * 14 12 11 42 42 H 0.96993 * 120.00385 * 180.02562 * 18 17 15 43 43 H 1.08994 * 110.72348 * 205.96664 * 23 12 11 44 44 H 1.09006 * 110.87416 * 82.76638 * 23 12 11 45 45 H 1.08997 * 109.47238 * 61.45372 * 26 24 10 46 46 H 1.09004 * 109.47159 * 181.45236 * 26 24 10 47 47 H 1.08997 * 109.46952 * 301.45106 * 26 24 10 48 48 H 0.96700 * 114.00259 * 89.99862 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2010 0.0000 4 6 3.5765 1.1939 -0.0005 5 6 4.3539 2.4849 -0.0011 6 6 4.2304 -0.0262 -0.0005 7 6 5.7363 -0.0854 -0.0017 8 6 6.2372 -0.1051 -1.4229 9 8 5.4490 -0.0737 -2.3441 10 7 7.5611 -0.1566 -1.6702 11 6 8.6249 -0.1914 -0.6501 12 6 9.8322 -0.8562 -1.3622 13 1 9.7322 -1.9414 -1.3770 14 7 11.0946 -0.4565 -0.7354 15 6 11.6417 -1.2280 0.2549 16 1 11.1424 -2.1309 0.5742 17 6 12.8382 -0.8496 0.8485 18 7 13.4465 0.2510 0.4598 19 14 13.5841 -1.9016 2.1998 20 1 13.8599 -3.2622 1.6726 21 1 14.8522 -1.2841 2.6648 22 1 12.6333 -1.9946 3.3366 23 6 9.7103 -0.2668 -2.7922 24 6 8.1838 -0.1806 -3.0017 25 1 7.9325 0.7304 -3.5449 26 6 7.6961 -1.4028 -3.7823 27 6 3.4803 -1.1949 -0.0005 28 8 4.1094 -2.3970 0.0000 29 7 2.1584 -1.1473 -0.0057 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.6477 2.1357 0.0006 34 1 4.5405 2.7961 -1.0289 35 1 3.7792 3.2553 0.5130 36 1 5.3040 2.3372 0.5120 37 1 6.1347 0.7896 0.5119 38 1 6.0648 -0.9889 0.5119 39 1 8.8788 0.8198 -0.3322 40 1 8.3117 -0.7913 0.2044 41 1 11.5430 0.3546 -1.0219 42 1 14.2827 0.5152 0.8742 43 1 10.1632 -0.9350 -3.5247 44 1 10.1629 0.7235 -2.8441 45 1 6.6159 -1.3418 -3.9151 46 1 8.1812 -1.4280 -4.7581 47 1 7.9437 -2.3092 -3.2299 48 1 4.2914 -2.7453 0.8836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989339312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:00 Heat of formation + Delta-G solvation = -33.494434 kcal Electronic energy + Delta-G solvation = -29123.057820 eV Core-core repulsion = 25178.296232 eV Total energy + Delta-G solvation = -3944.761589 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.01911 -39.77073 -37.46841 -37.36398 -34.91837 -34.19504 -32.25480 -31.77614 -31.33954 -30.01839 -28.34853 -27.91175 -26.07276 -25.43375 -23.91322 -22.98910 -21.93852 -20.95488 -20.08815 -18.72294 -18.45566 -17.45022 -17.36541 -16.92656 -15.93917 -15.59594 -15.36376 -15.06320 -14.68189 -14.37770 -14.12634 -13.67498 -13.52535 -13.46226 -13.23941 -13.13763 -13.08770 -12.94653 -12.86884 -12.51621 -12.45489 -12.11875 -12.09044 -11.83836 -11.75056 -11.66874 -11.54405 -11.21180 -11.00475 -10.77853 -10.66076 -10.31469 -10.05083 -9.82560 -9.73133 -9.53875 -9.47375 -9.06117 -8.74774 -8.34729 -7.14324 -5.89991 -3.21101 0.85042 1.06347 2.84938 3.15381 3.36160 3.37418 3.41771 3.42138 3.61565 4.28874 4.41633 4.47057 4.69093 4.69961 4.74550 4.97556 5.10718 5.11454 5.15512 5.19422 5.25574 5.27200 5.34766 5.40373 5.45452 5.47961 5.56935 5.58812 5.62825 5.66404 5.84432 5.85370 5.85505 5.90620 6.09961 6.10154 6.14075 6.21014 6.28868 6.41352 6.43847 6.53073 6.66043 6.82370 7.38185 7.57955 7.82122 7.82867 8.27321 8.40862 9.39398 9.92934 10.27870 11.31828 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.002773 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.972044 B =10096.260667 C =10698.586567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.148 3.852 3 C -0.184 4.184 4 C -0.011 4.011 5 C -0.121 4.121 6 C -0.133 4.133 7 C -0.092 4.092 8 C 0.535 3.465 9 O -0.543 6.543 10 N -0.610 5.610 11 C 0.071 3.929 12 C 0.174 3.826 13 H 0.068 0.932 14 N -0.712 5.712 15 C -0.250 4.250 16 H 0.072 0.928 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.138 4.138 24 C 0.140 3.860 25 H 0.068 0.932 26 C -0.161 4.161 27 C 0.333 3.667 28 O -0.476 6.476 29 N -0.508 5.508 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.068 0.932 41 H 0.387 0.613 42 H 0.258 0.742 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.056 0.944 48 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.892 2.980 -0.359 21.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.011 3.989 3 C -0.204 4.204 4 C -0.019 4.019 5 C -0.177 4.177 6 C -0.137 4.137 7 C -0.132 4.132 8 C 0.323 3.677 9 O -0.421 6.421 10 N -0.344 5.344 11 C -0.055 4.055 12 C 0.062 3.938 13 H 0.086 0.914 14 N -0.351 5.351 15 C -0.381 4.381 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.577 5.577 19 Si 0.739 3.261 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.177 4.177 24 C 0.037 3.963 25 H 0.086 0.914 26 C -0.219 4.219 27 C 0.154 3.846 28 O -0.283 6.283 29 N -0.228 5.228 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.100 0.900 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.088 0.912 40 H 0.087 0.913 41 H 0.221 0.779 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.076 0.924 48 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -21.722 2.121 -1.305 21.864 hybrid contribution 1.238 0.324 1.215 1.764 sum -20.484 2.445 -0.090 20.630 Atomic orbital electron populations 1.20720 0.88628 1.03416 1.03226 1.20940 0.96639 0.87242 0.94107 1.21756 0.93862 0.99292 1.05515 1.20053 0.93693 0.94891 0.93237 1.20909 1.00028 0.93358 1.03439 1.20176 0.95612 0.92850 1.05056 1.20464 0.91325 1.05472 0.95927 1.19911 0.80794 0.76368 0.90635 1.90670 1.54630 1.50532 1.46277 1.48609 1.04912 1.72258 1.08622 1.23555 0.88662 1.01720 0.91549 1.21311 0.86017 0.97050 0.89428 0.91368 1.42325 1.20846 1.28932 1.43023 1.19207 1.03448 1.04165 1.11264 0.91000 1.24772 0.97813 0.97712 1.00151 1.69645 1.18792 1.24277 1.44954 0.86260 0.78486 0.79590 0.81767 1.21121 1.21636 1.21136 1.23026 0.92834 1.02383 0.99475 1.21471 0.92778 0.98362 0.83729 0.91437 1.22127 1.02414 0.97752 0.99570 1.18825 0.86559 0.84804 0.94437 1.84850 1.76516 1.33433 1.33452 1.66956 1.09505 1.30686 1.15684 0.90308 0.90453 0.90559 0.84571 0.89997 0.90768 0.90620 0.87715 0.87776 0.91246 0.91339 0.77855 0.93247 0.90197 0.90646 0.91533 0.92081 0.92440 0.74548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 10.17 36.01 0.37 -0.43 16 2 C 0.15 1.70 6.78 -82.60 -0.56 1.14 16 3 C -0.18 -1.93 9.44 -39.43 -0.37 -2.30 16 4 C -0.01 -0.13 5.91 -104.35 -0.62 -0.75 16 5 C -0.12 -1.12 9.67 36.01 0.35 -0.77 16 6 C -0.13 -1.74 4.41 -104.32 -0.46 -2.20 16 7 C -0.09 -1.15 4.25 -29.03 -0.12 -1.27 16 8 C 0.53 8.42 7.62 -10.98 -0.08 8.34 16 9 O -0.54 -10.25 14.93 5.56 0.08 -10.17 16 10 N -0.61 -9.39 3.08 -162.88 -0.50 -9.89 16 11 C 0.07 1.14 6.40 -2.41 -0.02 1.12 16 12 C 0.17 3.16 3.73 -65.66 -0.24 2.92 16 13 H 0.07 1.28 8.09 -51.93 -0.42 0.86 16 14 N -0.71 -16.29 5.24 -51.24 -0.27 -16.56 16 15 C -0.25 -6.42 9.96 -15.06 -0.15 -6.57 16 16 H 0.07 1.79 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -26.54 13.06 55.49 0.72 -25.82 16 19 Si 0.91 21.22 29.55 -169.99 -5.02 16.19 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 23 C -0.14 -2.14 6.13 -24.90 -0.15 -2.29 16 24 C 0.14 2.10 3.49 -66.96 -0.23 1.87 16 25 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 26 C -0.16 -2.32 9.06 37.16 0.34 -1.99 16 27 C 0.33 4.67 7.72 -17.12 -0.13 4.54 16 28 O -0.48 -6.18 12.62 -18.73 -0.24 -6.41 16 29 N -0.51 -7.14 10.30 -9.55 -0.10 -7.24 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.40 8.08 -51.93 -0.42 -0.01 16 33 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.52 8.10 -51.93 -0.42 0.09 16 36 H 0.08 0.67 6.08 -51.93 -0.32 0.35 16 37 H 0.10 1.12 6.07 -51.93 -0.32 0.81 16 38 H 0.10 1.18 7.26 -51.93 -0.38 0.80 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.07 1.05 7.48 -51.93 -0.39 0.66 16 41 H 0.39 9.46 7.77 -40.82 -0.32 9.15 16 42 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 43 H 0.08 1.18 7.83 -51.93 -0.41 0.77 16 44 H 0.07 1.17 8.01 -51.93 -0.42 0.76 16 45 H 0.07 1.08 6.75 -51.93 -0.35 0.73 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 48 H 0.40 3.00 9.06 45.56 0.41 3.41 16 LS Contribution 392.12 15.07 5.91 5.91 Total: -1.00 -33.52 392.12 -8.26 -41.78 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -6.66 Total: 11.16 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -2.19 Total: 1.05 kcal Atomic # 7 Polarization: -59.37 SS G_CDS: -0.14 Total: -59.52 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.15 Total: -16.58 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.52 -8.26 -41.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989339312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.290 kcal (2) G-P(sol) polarization free energy of solvation -33.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds