Wall clock time and date at job start Tue Mar 31 2020 17:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38093 * 119.57911 * 2 1 4 4 C 1.38782 * 119.28607 * 180.02562 * 3 2 1 5 5 C 1.50700 * 120.76220 * 179.97438 * 4 3 2 6 6 C 1.38423 * 118.48510 * 359.97438 * 4 3 2 7 7 C 1.50704 * 120.44360 * 179.97438 * 6 4 3 8 8 C 1.50703 * 109.47373 * 270.02479 * 7 6 4 9 9 O 1.21282 * 119.99917 * 0.02562 * 8 7 6 10 10 N 1.34779 * 120.00163 * 179.97438 * 8 7 6 11 11 C 1.47425 * 125.64469 * 359.69443 * 10 8 7 12 12 C 1.55130 * 104.71902 * 155.81694 * 11 10 8 13 13 H 1.08992 * 111.19080 * 279.18723 * 12 11 10 14 14 N 1.46500 * 110.93615 * 155.28575 * 12 11 10 15 15 C 1.36942 * 119.99627 * 92.95841 * 14 12 11 16 16 H 1.08001 * 120.00367 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99848 * 179.97438 * 15 14 12 18 18 N 1.31623 * 120.00087 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00135 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47189 * 60.00600 * 19 17 15 21 21 H 1.48507 * 109.47310 * 180.02562 * 19 17 15 22 22 H 1.48494 * 109.47510 * 300.00453 * 19 17 15 23 23 C 1.55152 * 101.48736 * 37.29281 * 12 11 10 24 24 C 1.47015 * 125.65044 * 180.02562 * 10 8 7 25 25 H 1.09005 * 109.88496 * 61.44965 * 24 10 8 26 26 C 1.53005 * 109.88163 * 300.44354 * 24 10 8 27 27 C 1.38872 * 119.11479 * 0.02562 * 6 4 3 28 28 O 1.35677 * 119.68503 * 180.02562 * 27 6 4 29 29 N 1.31933 * 119.58506 * 180.28637 * 2 1 3 30 30 H 1.08992 * 109.46898 * 90.00432 * 1 2 3 31 31 H 1.09004 * 109.46861 * 210.00504 * 1 2 3 32 32 H 1.08993 * 109.47576 * 330.00236 * 1 2 3 33 33 H 1.07997 * 120.36190 * 0.03714 * 3 2 1 34 34 H 1.09000 * 109.47032 * 270.02627 * 5 4 3 35 35 H 1.09006 * 109.46974 * 30.01558 * 5 4 3 36 36 H 1.08992 * 109.47803 * 150.01778 * 5 4 3 37 37 H 1.08997 * 109.46964 * 30.02855 * 7 6 4 38 38 H 1.09000 * 109.46945 * 150.02584 * 7 6 4 39 39 H 1.09000 * 110.36532 * 274.74314 * 11 10 8 40 40 H 1.08997 * 110.36857 * 37.06603 * 11 10 8 41 41 H 0.96998 * 120.00165 * 272.95257 * 14 12 11 42 42 H 0.96993 * 120.00385 * 180.02562 * 18 17 15 43 43 H 1.08994 * 110.72348 * 205.96664 * 23 12 11 44 44 H 1.09006 * 110.87416 * 82.76638 * 23 12 11 45 45 H 1.08997 * 109.47238 * 61.45372 * 26 24 10 46 46 H 1.09004 * 109.47159 * 181.45236 * 26 24 10 47 47 H 1.08997 * 109.46952 * 301.45106 * 26 24 10 48 48 H 0.96700 * 114.00259 * 89.99862 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1887 1.2010 0.0000 4 6 3.5765 1.1939 -0.0005 5 6 4.3539 2.4849 -0.0011 6 6 4.2304 -0.0262 -0.0005 7 6 5.7363 -0.0854 -0.0017 8 6 6.2372 -0.1051 -1.4229 9 8 5.4490 -0.0737 -2.3441 10 7 7.5611 -0.1566 -1.6702 11 6 8.6249 -0.1914 -0.6501 12 6 9.8322 -0.8562 -1.3622 13 1 9.7322 -1.9414 -1.3770 14 7 11.0946 -0.4565 -0.7354 15 6 11.6417 -1.2280 0.2549 16 1 11.1424 -2.1309 0.5742 17 6 12.8382 -0.8496 0.8485 18 7 13.4465 0.2510 0.4598 19 14 13.5841 -1.9016 2.1998 20 1 13.8599 -3.2622 1.6726 21 1 14.8522 -1.2841 2.6648 22 1 12.6333 -1.9946 3.3366 23 6 9.7103 -0.2668 -2.7922 24 6 8.1838 -0.1806 -3.0017 25 1 7.9325 0.7304 -3.5449 26 6 7.6961 -1.4028 -3.7823 27 6 3.4803 -1.1949 -0.0005 28 8 4.1094 -2.3970 0.0000 29 7 2.1584 -1.1473 -0.0057 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8899 0.5137 33 1 1.6477 2.1357 0.0006 34 1 4.5405 2.7961 -1.0289 35 1 3.7792 3.2553 0.5130 36 1 5.3040 2.3372 0.5120 37 1 6.1347 0.7896 0.5119 38 1 6.0648 -0.9889 0.5119 39 1 8.8788 0.8198 -0.3322 40 1 8.3117 -0.7913 0.2044 41 1 11.5430 0.3546 -1.0219 42 1 14.2827 0.5152 0.8742 43 1 10.1632 -0.9350 -3.5247 44 1 10.1629 0.7235 -2.8441 45 1 6.6159 -1.3418 -3.9151 46 1 8.1812 -1.4280 -4.7581 47 1 7.9437 -2.3092 -3.2299 48 1 4.2914 -2.7453 0.8836 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989339312.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:59 Heat of formation + Delta-G solvation = -57.987192 kcal Electronic energy + Delta-G solvation = -29124.119906 eV Core-core repulsion = 25178.296232 eV Total energy + Delta-G solvation = -3945.823674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.96488 -40.98901 -38.77824 -38.30093 -36.01125 -35.75089 -33.40477 -33.10482 -32.68562 -30.93059 -29.95044 -28.67502 -26.99241 -26.70384 -25.72704 -23.98164 -23.11572 -21.98321 -21.39671 -19.95316 -19.38627 -19.28117 -18.29994 -18.16862 -17.04128 -16.90950 -16.42531 -16.29099 -16.11547 -15.61655 -15.13592 -15.06752 -14.72042 -14.54337 -14.41283 -14.30316 -14.17225 -13.92361 -13.84292 -13.75881 -13.30315 -13.17474 -13.10055 -12.98871 -12.84972 -12.77828 -12.74354 -12.51943 -12.44994 -12.29402 -12.12717 -12.05580 -11.70115 -11.45026 -11.06040 -10.84845 -10.45057 -10.37996 -9.67265 -9.62517 -9.02978 -7.92702 -5.22438 -0.02606 0.19254 1.52468 1.53561 1.59541 1.62415 1.98213 2.52680 2.58976 2.70805 3.38812 3.41978 3.47840 3.67158 3.81136 3.84245 3.89401 3.96205 3.99803 4.11957 4.20225 4.34304 4.36367 4.45518 4.47711 4.52327 4.54330 4.61280 4.69048 4.71199 4.76705 4.81365 4.84110 4.91588 4.99462 5.02182 5.10652 5.15056 5.21512 5.24709 5.32183 5.34141 5.47322 5.56838 5.66156 6.28159 6.55219 6.59858 6.96118 7.16645 7.36235 8.07412 8.31860 9.29818 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015595 B = 0.002773 C = 0.002617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1794.972044 B =10096.260667 C =10698.586567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.135 3.865 3 C -0.183 4.183 4 C -0.020 4.020 5 C -0.119 4.119 6 C -0.151 4.151 7 C -0.086 4.086 8 C 0.533 3.467 9 O -0.576 6.576 10 N -0.609 5.609 11 C 0.085 3.915 12 C 0.168 3.832 13 H 0.064 0.936 14 N -0.722 5.722 15 C -0.242 4.242 16 H 0.079 0.921 17 C -0.068 4.068 18 N -0.966 5.966 19 Si 0.968 3.032 20 H -0.281 1.281 21 H -0.300 1.300 22 H -0.276 1.276 23 C -0.126 4.126 24 C 0.139 3.861 25 H 0.071 0.929 26 C -0.152 4.152 27 C 0.313 3.687 28 O -0.493 6.493 29 N -0.539 5.539 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.170 0.830 34 H 0.072 0.928 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.124 0.876 38 H 0.115 0.885 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.377 0.623 42 H 0.251 0.749 43 H 0.089 0.911 44 H 0.075 0.925 45 H 0.046 0.954 46 H 0.082 0.918 47 H 0.052 0.948 48 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.260 3.416 0.211 22.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.002 4.002 3 C -0.203 4.203 4 C -0.028 4.028 5 C -0.175 4.175 6 C -0.155 4.155 7 C -0.125 4.125 8 C 0.323 3.677 9 O -0.456 6.456 10 N -0.342 5.342 11 C -0.040 4.040 12 C 0.057 3.943 13 H 0.082 0.918 14 N -0.361 5.361 15 C -0.374 4.374 16 H 0.097 0.903 17 C -0.261 4.261 18 N -0.616 5.616 19 Si 0.797 3.203 20 H -0.207 1.207 21 H -0.226 1.226 22 H -0.202 1.202 23 C -0.165 4.165 24 C 0.036 3.964 25 H 0.089 0.911 26 C -0.210 4.210 27 C 0.134 3.866 28 O -0.303 6.303 29 N -0.260 5.260 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.187 0.813 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.142 0.858 38 H 0.133 0.867 39 H 0.085 0.915 40 H 0.096 0.904 41 H 0.210 0.790 42 H 0.060 0.940 43 H 0.108 0.892 44 H 0.094 0.906 45 H 0.065 0.935 46 H 0.101 0.899 47 H 0.071 0.929 48 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -23.131 2.525 -0.729 23.280 hybrid contribution 1.541 0.172 0.965 1.827 sum -21.590 2.696 0.236 21.759 Atomic orbital electron populations 1.20825 0.86192 1.04743 1.03934 1.21629 0.98365 0.87061 0.93146 1.22145 0.93644 1.00321 1.04141 1.20443 0.94576 0.95247 0.92524 1.20949 1.00376 0.92939 1.03212 1.20278 0.95689 0.93296 1.06235 1.20466 0.91387 1.06823 0.93850 1.20445 0.80307 0.75281 0.91643 1.90654 1.55275 1.52030 1.47649 1.48627 1.04918 1.72116 1.08553 1.23234 0.87818 1.01413 0.91561 1.21448 0.84866 0.97060 0.90922 0.91782 1.42423 1.22377 1.28364 1.42924 1.19578 1.02995 1.04032 1.10798 0.90277 1.25489 0.98809 0.99074 1.02755 1.69790 1.19111 1.26124 1.46574 0.85303 0.77323 0.78055 0.79602 1.20686 1.22615 1.20179 1.22919 0.93248 1.02382 0.97929 1.21508 0.92259 0.98813 0.83833 0.91127 1.22048 1.01213 0.97165 1.00594 1.19070 0.86969 0.85245 0.95273 1.84787 1.76570 1.33572 1.35343 1.66994 1.09750 1.32248 1.16990 0.89741 0.90744 0.87645 0.81267 0.90894 0.88123 0.90348 0.85839 0.86728 0.91540 0.90351 0.78996 0.94018 0.89203 0.90645 0.93473 0.89936 0.92873 0.72496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.17 71.24 0.72 -0.62 16 2 C 0.14 2.93 6.78 42.51 0.29 3.22 16 3 C -0.18 -3.44 9.44 22.37 0.21 -3.23 16 4 C -0.02 -0.44 5.91 -19.69 -0.12 -0.55 16 5 C -0.12 -1.93 9.67 71.24 0.69 -1.25 16 6 C -0.15 -3.85 4.41 -19.67 -0.09 -3.93 16 7 C -0.09 -2.05 4.25 29.10 0.12 -1.92 16 8 C 0.53 16.38 7.62 87.66 0.67 17.05 16 9 O -0.58 -21.65 14.93 -3.04 -0.05 -21.70 16 10 N -0.61 -18.07 3.08 -787.62 -2.42 -20.49 16 11 C 0.09 2.62 6.40 86.93 0.56 3.18 16 12 C 0.17 5.89 3.73 46.46 0.17 6.07 16 13 H 0.06 2.32 8.09 -2.39 -0.02 2.30 16 14 N -0.72 -32.68 5.24 -316.02 -1.66 -34.33 16 15 C -0.24 -12.28 9.96 84.03 0.84 -11.44 16 16 H 0.08 3.82 7.83 -2.91 -0.02 3.80 16 17 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 18 N -0.97 -55.69 13.06 21.65 0.28 -55.41 16 19 Si 0.97 43.44 29.55 68.60 2.03 45.47 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 H -0.30 -13.78 7.11 99.48 0.71 -13.08 16 22 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 23 C -0.13 -3.74 6.13 31.78 0.19 -3.55 16 24 C 0.14 4.01 3.49 45.34 0.16 4.17 16 25 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 26 C -0.15 -4.24 9.06 71.98 0.65 -3.59 16 27 C 0.31 8.77 7.72 84.78 0.65 9.42 16 28 O -0.49 -12.91 12.62 -89.95 -1.14 -14.05 16 29 N -0.54 -15.05 10.30 -296.97 -3.06 -18.11 16 30 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.10 0.78 8.08 -2.39 -0.02 0.76 16 33 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 34 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.10 1.08 8.10 -2.38 -0.02 1.06 16 36 H 0.08 1.21 6.08 -2.39 -0.01 1.20 16 37 H 0.12 2.43 6.07 -2.39 -0.01 2.42 16 38 H 0.11 2.46 7.26 -2.39 -0.02 2.44 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.08 2.26 7.48 -2.39 -0.02 2.24 16 41 H 0.38 18.48 7.77 -92.71 -0.72 17.76 16 42 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 43 H 0.09 2.49 7.83 -2.39 -0.02 2.47 16 44 H 0.07 2.27 8.01 -2.38 -0.02 2.25 16 45 H 0.05 1.51 6.75 -2.39 -0.02 1.49 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.41 6.33 9.06 -74.06 -0.67 5.66 16 Total: -1.00 -72.31 392.12 -0.22 -72.52 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: -0.40 Total: 36.29 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 6.19 Total: 9.81 kcal Atomic # 7 Polarization: -121.49 SS G_CDS: -6.86 Total: -128.35 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -1.18 Total: -35.74 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -72.31 -0.22 -72.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989339312.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.535 kcal (2) G-P(sol) polarization free energy of solvation -72.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds