Wall clock time and date at job start Tue Mar 31 2020 17:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38091 * 119.58674 * 2 1 4 4 C 1.38787 * 119.28499 * 179.74523 * 3 2 1 5 5 C 1.50703 * 120.75420 * 180.29994 * 4 3 2 6 6 C 1.38413 * 118.48608 * 0.53802 * 4 3 2 7 7 C 1.50706 * 120.44434 * 179.73310 * 6 4 3 8 8 C 1.50698 * 109.47294 * 269.73060 * 7 6 4 9 9 O 1.21282 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.47427 * 125.64826 * 359.68469 * 10 8 7 12 12 C 1.55126 * 104.71948 * 155.81997 * 11 10 8 13 13 H 1.09006 * 110.90515 * 155.27516 * 12 11 10 14 14 N 1.46497 * 111.22627 * 279.17321 * 12 11 10 15 15 C 1.36936 * 120.00516 * 267.21077 * 14 12 11 16 16 H 1.07996 * 119.99571 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00101 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99649 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47568 * 89.99904 * 19 17 15 21 21 H 1.48506 * 109.47151 * 209.99648 * 19 17 15 22 22 H 1.48501 * 109.47649 * 329.99604 * 19 17 15 23 23 C 1.55156 * 101.48932 * 37.29895 * 12 11 10 24 24 C 1.47020 * 125.64880 * 179.97438 * 10 8 7 25 25 H 1.09007 * 109.88253 * 300.43427 * 24 10 8 26 26 C 1.53001 * 109.88415 * 61.44608 * 24 10 8 27 27 C 1.38873 * 119.11239 * 359.46654 * 6 4 3 28 28 O 1.35684 * 119.68366 * 180.24903 * 27 6 4 29 29 N 1.31934 * 119.58166 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47424 * 269.98185 * 1 2 3 31 31 H 1.09007 * 109.47018 * 29.97876 * 1 2 3 32 32 H 1.08995 * 109.47676 * 149.97272 * 1 2 3 33 33 H 1.08001 * 120.35301 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47101 * 270.24437 * 5 4 3 35 35 H 1.08998 * 109.47259 * 30.24226 * 5 4 3 36 36 H 1.08999 * 109.46854 * 150.24795 * 5 4 3 37 37 H 1.09001 * 109.46953 * 29.72502 * 7 6 4 38 38 H 1.09000 * 109.47318 * 149.72100 * 7 6 4 39 39 H 1.08999 * 110.36438 * 274.75072 * 11 10 8 40 40 H 1.09005 * 110.36351 * 37.07020 * 11 10 8 41 41 H 0.97010 * 119.99429 * 87.20974 * 14 12 11 42 42 H 0.97006 * 119.99508 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.72081 * 205.96687 * 23 12 11 44 44 H 1.08997 * 110.87206 * 82.76453 * 23 12 11 45 45 H 1.08997 * 109.47046 * 58.54766 * 26 24 10 46 46 H 1.09003 * 109.47012 * 178.54685 * 26 24 10 47 47 H 1.09005 * 109.46958 * 298.54785 * 26 24 10 48 48 H 0.96702 * 113.99614 * 89.99397 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1935 0.0054 5 6 4.3540 2.4846 0.0123 6 6 4.2304 -0.0264 -0.0008 7 6 5.7363 -0.0858 -0.0014 8 6 6.2377 -0.1052 -1.4224 9 8 5.4499 -0.0743 -2.3440 10 7 7.5617 -0.1579 -1.6691 11 6 8.6251 -0.1941 -0.6487 12 6 9.8320 -0.8596 -1.3607 13 1 10.7712 -0.5627 -0.8936 14 7 9.6972 -2.3182 -1.3815 15 6 10.2574 -3.0719 -0.3849 16 1 10.7988 -2.5911 0.4163 17 6 10.1300 -4.4541 -0.4049 18 7 9.4714 -5.0401 -1.3822 19 14 10.8947 -5.4822 0.9542 20 1 9.9133 -5.6564 2.0550 21 1 11.2744 -6.8126 0.4145 22 1 12.1045 -4.7953 1.4737 23 6 9.7112 -0.2693 -2.7905 24 6 8.1848 -0.1827 -3.0005 25 1 7.8370 -1.0534 -3.5565 26 6 7.8333 1.0961 -3.7635 27 6 3.4801 -1.1951 -0.0009 28 8 4.1091 -2.3973 -0.0018 29 7 2.1583 -1.1474 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6478 2.1356 0.0004 34 1 4.5417 2.8012 -1.0136 35 1 3.7789 3.2522 0.5300 36 1 5.3038 2.3340 0.5256 37 1 6.1346 0.7891 0.5124 38 1 6.0645 -0.9895 0.5122 39 1 8.8797 0.8167 -0.3302 40 1 8.3109 -0.7941 0.2054 41 1 9.2111 -2.7500 -2.1014 42 1 9.3821 -6.0059 -1.3960 43 1 10.1638 -0.9376 -3.5231 44 1 10.1647 0.7205 -2.8416 45 1 8.1770 1.9624 -3.1984 46 1 8.3195 1.0824 -4.7390 47 1 6.7530 1.1544 -3.8967 48 1 4.2920 -2.7461 0.8814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989339315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:09 Heat of formation + Delta-G solvation = -32.460062 kcal Electronic energy + Delta-G solvation = -29636.527021 eV Core-core repulsion = 25691.810286 eV Total energy + Delta-G solvation = -3944.716735 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.87296 -39.63683 -37.35126 -37.17281 -34.79794 -33.95766 -32.11347 -31.62978 -31.30492 -29.89173 -28.43500 -27.83499 -25.94197 -25.43500 -23.75448 -22.88448 -21.95308 -20.83019 -19.93137 -18.53531 -18.26470 -17.33074 -17.26800 -16.76241 -16.00022 -15.50074 -15.29452 -14.79863 -14.51811 -14.23068 -13.98504 -13.69104 -13.56988 -13.41072 -13.31601 -13.05021 -13.00392 -12.86101 -12.66851 -12.42953 -12.20016 -12.06786 -11.93401 -11.67914 -11.63557 -11.56033 -11.39625 -11.13735 -10.96917 -10.77094 -10.64576 -10.31449 -10.02449 -9.73766 -9.59820 -9.39478 -9.34348 -9.04845 -8.60444 -8.18742 -7.05346 -5.83150 -3.14222 0.98875 1.18544 3.03704 3.32761 3.38354 3.43505 3.46220 3.55995 3.75768 4.41886 4.50682 4.51573 4.81187 4.82632 4.85542 5.08201 5.14555 5.22136 5.24189 5.27496 5.33655 5.36990 5.41266 5.48501 5.51858 5.58127 5.62508 5.67290 5.69477 5.74835 5.80620 5.88925 5.94092 6.00695 6.01642 6.19121 6.22688 6.24855 6.41299 6.43811 6.54816 6.59980 6.70395 6.84915 7.60675 7.62093 7.98600 7.99534 8.33549 8.59583 9.45274 10.01059 10.35477 11.38460 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.003659 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.704458 B = 7650.788312 C = 9179.738601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.147 3.853 3 C -0.187 4.187 4 C -0.014 4.014 5 C -0.118 4.118 6 C -0.132 4.132 7 C -0.091 4.091 8 C 0.538 3.462 9 O -0.545 6.545 10 N -0.599 5.599 11 C 0.067 3.933 12 C 0.170 3.830 13 H 0.073 0.927 14 N -0.711 5.711 15 C -0.250 4.250 16 H 0.072 0.928 17 C -0.007 4.007 18 N -0.925 5.925 19 Si 0.907 3.093 20 H -0.290 1.290 21 H -0.291 1.291 22 H -0.281 1.281 23 C -0.139 4.139 24 C 0.139 3.861 25 H 0.072 0.928 26 C -0.158 4.158 27 C 0.336 3.664 28 O -0.471 6.471 29 N -0.508 5.508 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.135 0.865 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.055 0.945 40 H 0.078 0.922 41 H 0.386 0.614 42 H 0.257 0.743 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.051 0.949 46 H 0.060 0.940 47 H 0.064 0.936 48 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.418 17.197 4.426 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.010 3.990 3 C -0.207 4.207 4 C -0.022 4.022 5 C -0.175 4.175 6 C -0.136 4.136 7 C -0.131 4.131 8 C 0.326 3.674 9 O -0.422 6.422 10 N -0.332 5.332 11 C -0.059 4.059 12 C 0.057 3.943 13 H 0.091 0.909 14 N -0.350 5.350 15 C -0.381 4.381 16 H 0.090 0.910 17 C -0.204 4.204 18 N -0.572 5.572 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.178 4.178 24 C 0.036 3.964 25 H 0.090 0.910 26 C -0.216 4.216 27 C 0.157 3.843 28 O -0.278 6.278 29 N -0.228 5.228 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.153 0.847 34 H 0.099 0.901 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.220 0.780 42 H 0.067 0.933 43 H 0.101 0.899 44 H 0.091 0.909 45 H 0.070 0.930 46 H 0.079 0.921 47 H 0.083 0.917 48 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -11.244 16.334 3.477 20.133 hybrid contribution 0.771 -0.314 1.013 1.311 sum -10.474 16.020 4.490 19.660 Atomic orbital electron populations 1.20713 0.88732 1.03531 1.02971 1.20932 0.96607 0.87293 0.94199 1.21718 0.93844 0.99193 1.05931 1.20011 0.93670 0.94782 0.93706 1.20876 0.99885 0.93428 1.03270 1.20189 0.95685 0.92830 1.04917 1.20451 0.91257 1.05283 0.96079 1.19819 0.80764 0.76269 0.90553 1.90666 1.54611 1.50680 1.46288 1.48383 1.04758 1.72012 1.08088 1.23457 0.90499 0.99349 0.92628 1.21339 0.94674 0.86022 0.92266 0.90877 1.42337 1.64506 0.98741 1.29437 1.19215 1.27825 0.88667 1.02392 0.90992 1.24777 1.00673 0.96689 0.98308 1.69673 1.45561 1.09398 1.32596 0.86213 0.78734 0.79986 0.81312 1.21684 1.21765 1.20704 1.23079 0.93678 1.01294 0.99776 1.21451 0.92994 0.97962 0.84035 0.90983 1.22123 1.02679 0.97136 0.99709 1.18908 0.86493 0.85104 0.93794 1.84912 1.76333 1.33090 1.33470 1.66983 1.09620 1.30614 1.15615 0.90414 0.90653 0.90420 0.84717 0.90132 0.90927 0.90815 0.88163 0.87500 0.92727 0.90361 0.77953 0.93328 0.89879 0.90857 0.92986 0.92127 0.91690 0.74350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 10.17 36.00 0.37 -0.55 16 2 C 0.15 1.90 6.78 -82.60 -0.56 1.34 16 3 C -0.19 -2.15 9.44 -39.43 -0.37 -2.53 16 4 C -0.01 -0.18 5.91 -104.35 -0.62 -0.79 16 5 C -0.12 -1.12 9.67 36.01 0.35 -0.77 16 6 C -0.13 -1.96 4.40 -104.32 -0.46 -2.42 16 7 C -0.09 -1.29 4.26 -29.03 -0.12 -1.42 16 8 C 0.54 9.56 7.63 -10.99 -0.08 9.48 16 9 O -0.54 -11.50 15.06 5.56 0.08 -11.42 16 10 N -0.60 -10.13 3.06 -162.88 -0.50 -10.63 16 11 C 0.07 1.06 6.41 -2.41 -0.02 1.04 16 12 C 0.17 3.02 3.72 -65.67 -0.24 2.78 16 13 H 0.07 1.25 8.09 -51.93 -0.42 0.83 16 14 N -0.71 -16.71 5.25 -51.24 -0.27 -16.98 16 15 C -0.25 -6.51 9.96 -15.06 -0.15 -6.66 16 16 H 0.07 1.78 7.83 -52.49 -0.41 1.37 16 17 C -0.01 -0.21 5.50 -17.43 -0.10 -0.30 16 18 N -0.93 -27.45 13.06 55.49 0.72 -26.73 16 19 Si 0.91 21.58 29.55 -169.99 -5.02 16.56 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 C -0.14 -2.13 6.08 -24.90 -0.15 -2.28 16 24 C 0.14 2.30 3.45 -66.95 -0.23 2.06 16 25 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 26 C -0.16 -2.25 9.11 37.16 0.34 -1.91 16 27 C 0.34 5.53 7.72 -17.13 -0.13 5.39 16 28 O -0.47 -7.87 12.62 -18.75 -0.24 -8.11 16 29 N -0.51 -8.14 10.30 -9.55 -0.10 -8.24 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 36 H 0.07 0.64 6.07 -51.93 -0.32 0.32 16 37 H 0.10 1.13 6.06 -51.93 -0.31 0.81 16 38 H 0.11 1.54 7.26 -51.93 -0.38 1.16 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 1.32 7.48 -51.93 -0.39 0.93 16 41 H 0.39 10.10 7.87 -40.82 -0.32 9.78 16 42 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 43 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 44 H 0.07 0.92 7.85 -51.93 -0.41 0.52 16 45 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.06 1.05 6.87 -51.93 -0.36 0.69 16 48 H 0.40 4.56 9.06 45.56 0.41 4.97 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -35.17 392.57 -8.26 -43.43 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: -6.68 Total: 13.73 kcal Atomic # 6 Polarization: 4.65 SS G_CDS: -2.18 Total: 2.47 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: -0.14 Total: -62.58 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -0.15 Total: -19.53 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.17 -8.26 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989339315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.971 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds