Wall clock time and date at job start Tue Mar 31 2020 17:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38091 * 119.58674 * 2 1 4 4 C 1.38787 * 119.28499 * 179.74523 * 3 2 1 5 5 C 1.50703 * 120.75420 * 180.29994 * 4 3 2 6 6 C 1.38413 * 118.48608 * 0.53802 * 4 3 2 7 7 C 1.50706 * 120.44434 * 179.73310 * 6 4 3 8 8 C 1.50698 * 109.47294 * 269.73060 * 7 6 4 9 9 O 1.21282 * 120.00025 * 359.97438 * 8 7 6 10 10 N 1.34776 * 120.00035 * 180.02562 * 8 7 6 11 11 C 1.47427 * 125.64826 * 359.68469 * 10 8 7 12 12 C 1.55126 * 104.71948 * 155.81997 * 11 10 8 13 13 H 1.09006 * 110.90515 * 155.27516 * 12 11 10 14 14 N 1.46497 * 111.22627 * 279.17321 * 12 11 10 15 15 C 1.36936 * 120.00516 * 267.21077 * 14 12 11 16 16 H 1.07996 * 119.99571 * 359.97438 * 15 14 12 17 17 C 1.38816 * 120.00101 * 180.02562 * 15 14 12 18 18 N 1.31615 * 119.99649 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 119.99787 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47568 * 89.99904 * 19 17 15 21 21 H 1.48506 * 109.47151 * 209.99648 * 19 17 15 22 22 H 1.48501 * 109.47649 * 329.99604 * 19 17 15 23 23 C 1.55156 * 101.48932 * 37.29895 * 12 11 10 24 24 C 1.47020 * 125.64880 * 179.97438 * 10 8 7 25 25 H 1.09007 * 109.88253 * 300.43427 * 24 10 8 26 26 C 1.53001 * 109.88415 * 61.44608 * 24 10 8 27 27 C 1.38873 * 119.11239 * 359.46654 * 6 4 3 28 28 O 1.35684 * 119.68366 * 180.24903 * 27 6 4 29 29 N 1.31934 * 119.58166 * 180.02562 * 2 1 3 30 30 H 1.09006 * 109.47424 * 269.98185 * 1 2 3 31 31 H 1.09007 * 109.47018 * 29.97876 * 1 2 3 32 32 H 1.08995 * 109.47676 * 149.97272 * 1 2 3 33 33 H 1.08001 * 120.35301 * 0.02562 * 3 2 1 34 34 H 1.08999 * 109.47101 * 270.24437 * 5 4 3 35 35 H 1.08998 * 109.47259 * 30.24226 * 5 4 3 36 36 H 1.08999 * 109.46854 * 150.24795 * 5 4 3 37 37 H 1.09001 * 109.46953 * 29.72502 * 7 6 4 38 38 H 1.09000 * 109.47318 * 149.72100 * 7 6 4 39 39 H 1.08999 * 110.36438 * 274.75072 * 11 10 8 40 40 H 1.09005 * 110.36351 * 37.07020 * 11 10 8 41 41 H 0.97010 * 119.99429 * 87.20974 * 14 12 11 42 42 H 0.97006 * 119.99508 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.72081 * 205.96687 * 23 12 11 44 44 H 1.08997 * 110.87206 * 82.76453 * 23 12 11 45 45 H 1.08997 * 109.47046 * 58.54766 * 26 24 10 46 46 H 1.09003 * 109.47012 * 178.54685 * 26 24 10 47 47 H 1.09005 * 109.46958 * 298.54785 * 26 24 10 48 48 H 0.96702 * 113.99614 * 89.99397 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1888 1.2008 0.0000 4 6 3.5766 1.1935 0.0054 5 6 4.3540 2.4846 0.0123 6 6 4.2304 -0.0264 -0.0008 7 6 5.7363 -0.0858 -0.0014 8 6 6.2377 -0.1052 -1.4224 9 8 5.4499 -0.0743 -2.3440 10 7 7.5617 -0.1579 -1.6691 11 6 8.6251 -0.1941 -0.6487 12 6 9.8320 -0.8596 -1.3607 13 1 10.7712 -0.5627 -0.8936 14 7 9.6972 -2.3182 -1.3815 15 6 10.2574 -3.0719 -0.3849 16 1 10.7988 -2.5911 0.4163 17 6 10.1300 -4.4541 -0.4049 18 7 9.4714 -5.0401 -1.3822 19 14 10.8947 -5.4822 0.9542 20 1 9.9133 -5.6564 2.0550 21 1 11.2744 -6.8126 0.4145 22 1 12.1045 -4.7953 1.4737 23 6 9.7112 -0.2693 -2.7905 24 6 8.1848 -0.1827 -3.0005 25 1 7.8370 -1.0534 -3.5565 26 6 7.8333 1.0961 -3.7635 27 6 3.4801 -1.1951 -0.0009 28 8 4.1091 -2.3973 -0.0018 29 7 2.1583 -1.1474 -0.0005 30 1 -0.3634 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3634 -0.8897 -0.5142 33 1 1.6478 2.1356 0.0004 34 1 4.5417 2.8012 -1.0136 35 1 3.7789 3.2522 0.5300 36 1 5.3038 2.3340 0.5256 37 1 6.1346 0.7891 0.5124 38 1 6.0645 -0.9895 0.5122 39 1 8.8797 0.8167 -0.3302 40 1 8.3109 -0.7941 0.2054 41 1 9.2111 -2.7500 -2.1014 42 1 9.3821 -6.0059 -1.3960 43 1 10.1638 -0.9376 -3.5231 44 1 10.1647 0.7205 -2.8416 45 1 8.1770 1.9624 -3.1984 46 1 8.3195 1.0824 -4.7390 47 1 6.7530 1.1544 -3.8967 48 1 4.2920 -2.7461 0.8814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000989339315.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:08 Heat of formation + Delta-G solvation = -59.634679 kcal Electronic energy + Delta-G solvation = -29637.705400 eV Core-core repulsion = 25691.810286 eV Total energy + Delta-G solvation = -3945.895115 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.95108 -40.94261 -38.75047 -38.33237 -35.88114 -35.68691 -33.32211 -33.07685 -32.66971 -30.89912 -30.08720 -28.65288 -26.97995 -26.66251 -25.68232 -24.01346 -23.15676 -21.89494 -21.29581 -19.85251 -19.42148 -19.23979 -18.34556 -18.06906 -17.38132 -16.68608 -16.41903 -16.33630 -15.91510 -15.53967 -15.31953 -15.03397 -14.88134 -14.57037 -14.41203 -14.20450 -14.03153 -13.84254 -13.77686 -13.46363 -13.27845 -13.20026 -13.14244 -12.89361 -12.85253 -12.80071 -12.67203 -12.51551 -12.43268 -12.23797 -12.18500 -12.04693 -11.61864 -11.46677 -11.04223 -10.85872 -10.45019 -10.37154 -9.64552 -9.60096 -8.95908 -7.91390 -5.20813 -0.02962 0.20056 1.49572 1.50455 1.59046 1.67703 2.10260 2.54397 2.58025 2.70450 3.40062 3.43632 3.58367 3.68019 3.82666 3.84883 3.91367 3.96275 4.04394 4.15526 4.20300 4.35683 4.38947 4.45880 4.49635 4.56343 4.63607 4.70891 4.71712 4.77947 4.79636 4.80868 4.84256 4.96433 5.00018 5.10200 5.12643 5.19318 5.22667 5.25169 5.32518 5.37146 5.54678 5.57519 5.67236 6.28673 6.55848 6.66113 6.96710 7.23824 7.35003 8.10650 8.32681 9.32031 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011934 B = 0.003659 C = 0.003049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.704458 B = 7650.788312 C = 9179.738601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.132 3.868 3 C -0.182 4.182 4 C -0.018 4.018 5 C -0.115 4.115 6 C -0.150 4.150 7 C -0.080 4.080 8 C 0.529 3.471 9 O -0.586 6.586 10 N -0.601 5.601 11 C 0.076 3.924 12 C 0.156 3.844 13 H 0.092 0.908 14 N -0.727 5.727 15 C -0.233 4.233 16 H 0.089 0.911 17 C -0.078 4.078 18 N -0.973 5.973 19 Si 0.970 3.030 20 H -0.290 1.290 21 H -0.305 1.305 22 H -0.262 1.262 23 C -0.123 4.123 24 C 0.133 3.867 25 H 0.028 0.972 26 C -0.145 4.145 27 C 0.304 3.696 28 O -0.499 6.499 29 N -0.543 5.543 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.175 0.825 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.099 0.901 39 H 0.102 0.898 40 H 0.065 0.935 41 H 0.367 0.633 42 H 0.247 0.753 43 H 0.070 0.930 44 H 0.115 0.885 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.039 0.961 48 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.867 21.231 6.089 24.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.005 4.005 3 C -0.201 4.201 4 C -0.026 4.026 5 C -0.171 4.171 6 C -0.154 4.154 7 C -0.120 4.120 8 C 0.319 3.681 9 O -0.467 6.467 10 N -0.334 5.334 11 C -0.049 4.049 12 C 0.046 3.954 13 H 0.110 0.890 14 N -0.365 5.365 15 C -0.365 4.365 16 H 0.106 0.894 17 C -0.270 4.270 18 N -0.624 5.624 19 Si 0.800 3.200 20 H -0.218 1.218 21 H -0.232 1.232 22 H -0.187 1.187 23 C -0.162 4.162 24 C 0.030 3.970 25 H 0.046 0.954 26 C -0.203 4.203 27 C 0.126 3.874 28 O -0.308 6.308 29 N -0.264 5.264 30 H 0.114 0.886 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.192 0.808 34 H 0.093 0.907 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.153 0.847 38 H 0.117 0.883 39 H 0.120 0.880 40 H 0.083 0.917 41 H 0.198 0.802 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.134 0.866 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.058 0.942 48 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -10.650 20.439 5.187 23.623 hybrid contribution 0.552 -1.459 0.463 1.627 sum -10.098 18.980 5.650 22.229 Atomic orbital electron populations 1.20827 0.86131 1.04290 1.04366 1.21691 0.98439 0.87124 0.93262 1.22176 0.93711 1.00209 1.04003 1.20489 0.94550 0.95207 0.92333 1.20953 1.00433 0.92367 1.03381 1.20302 0.95788 0.93280 1.06030 1.20420 0.91337 1.06419 0.93843 1.20453 0.80644 0.75389 0.91578 1.90639 1.55614 1.52607 1.47842 1.48515 1.04949 1.71386 1.08518 1.23398 0.88684 1.01426 0.91395 1.21706 0.96228 0.83033 0.94461 0.89047 1.42570 1.64236 1.01308 1.28394 1.19700 1.25592 0.88901 1.02315 0.89353 1.25569 1.02439 0.98285 1.00706 1.69859 1.48548 1.08776 1.35170 0.85185 0.78413 0.77842 0.78578 1.21751 1.23216 1.18678 1.23001 0.92603 1.02941 0.97643 1.21496 0.93851 0.97648 0.84048 0.95350 1.21998 1.01226 0.96424 1.00627 1.19219 0.87159 0.85317 0.95660 1.84854 1.76720 1.34132 1.35143 1.66972 1.09733 1.32624 1.17067 0.88568 0.87871 0.91640 0.80774 0.90725 0.87854 0.89882 0.84651 0.88288 0.87972 0.91670 0.80172 0.94455 0.91172 0.86645 0.90548 0.90381 0.94172 0.72847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.61 10.17 71.24 0.72 -0.89 16 2 C 0.13 3.30 6.78 42.51 0.29 3.59 16 3 C -0.18 -3.76 9.44 22.37 0.21 -3.55 16 4 C -0.02 -0.42 5.91 -19.69 -0.12 -0.54 16 5 C -0.12 -1.78 9.67 71.24 0.69 -1.09 16 6 C -0.15 -4.44 4.40 -19.67 -0.09 -4.53 16 7 C -0.08 -2.26 4.26 29.10 0.12 -2.13 16 8 C 0.53 18.88 7.63 87.66 0.67 19.55 16 9 O -0.59 -25.54 15.06 -3.04 -0.05 -25.59 16 10 N -0.60 -19.83 3.06 -787.61 -2.41 -22.24 16 11 C 0.08 2.20 6.41 86.93 0.56 2.75 16 12 C 0.16 5.23 3.72 46.46 0.17 5.40 16 13 H 0.09 2.78 8.09 -2.38 -0.02 2.76 16 14 N -0.73 -34.33 5.25 -316.02 -1.66 -35.98 16 15 C -0.23 -12.06 9.96 84.03 0.84 -11.23 16 16 H 0.09 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.08 -4.36 5.50 84.86 0.47 -3.90 16 18 N -0.97 -60.10 13.06 21.65 0.28 -59.82 16 19 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 20 H -0.29 -13.31 7.11 99.48 0.71 -12.61 16 21 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 22 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 23 C -0.12 -3.51 6.08 31.78 0.19 -3.32 16 24 C 0.13 4.34 3.45 45.34 0.16 4.50 16 25 H 0.03 1.16 8.14 -2.38 -0.02 1.14 16 26 C -0.14 -3.86 9.11 71.98 0.66 -3.20 16 27 C 0.30 10.48 7.72 84.78 0.65 11.14 16 28 O -0.50 -18.08 12.62 -90.02 -1.14 -19.22 16 29 N -0.54 -17.98 10.30 -296.98 -3.06 -21.04 16 30 H 0.10 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.10 1.08 8.08 -2.38 -0.02 1.06 16 32 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.17 2.11 8.06 -2.91 -0.02 2.08 16 34 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.10 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.08 1.11 6.07 -2.39 -0.01 1.10 16 37 H 0.14 2.69 6.06 -2.39 -0.01 2.67 16 38 H 0.10 2.91 7.26 -2.39 -0.02 2.89 16 39 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 2.09 7.48 -2.38 -0.02 2.07 16 41 H 0.37 19.96 7.87 -92.70 -0.73 19.23 16 42 H 0.25 15.02 8.31 -92.70 -0.77 14.25 16 43 H 0.07 2.20 8.14 -2.39 -0.02 2.19 16 44 H 0.12 2.37 7.85 -2.39 -0.02 2.35 16 45 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.04 1.28 6.87 -2.38 -0.02 1.26 16 48 H 0.41 10.64 9.06 -74.06 -0.67 9.97 16 Total: -1.00 -81.86 392.57 -0.22 -82.08 By element: Atomic # 1 Polarization: 42.64 SS G_CDS: -0.41 Total: 42.23 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 6.20 Total: 12.55 kcal Atomic # 7 Polarization: -132.24 SS G_CDS: -6.85 Total: -139.09 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.18 Total: -44.81 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -81.86 -0.22 -82.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989339315.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.444 kcal (2) G-P(sol) polarization free energy of solvation -81.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds