Wall clock time and date at job start Tue Mar 31 2020 17:48:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38347 * 119.40950 * 2 1 4 4 C 1.38336 * 119.46255 * 180.02562 * 3 2 1 5 5 C 1.50698 * 120.83033 * 179.97438 * 4 3 2 6 6 C 1.39995 * 118.34577 * 359.74449 * 4 3 2 7 7 C 1.47525 * 120.59404 * 180.26832 * 6 4 3 8 8 O 1.21593 * 119.99837 * 270.20561 * 7 6 4 9 9 N 1.34775 * 119.99951 * 90.21290 * 7 6 4 10 10 C 1.46508 * 119.99719 * 179.97438 * 9 7 6 11 11 H 1.08999 * 109.49828 * 34.93676 * 10 9 7 12 12 C 1.53034 * 109.49457 * 274.83537 * 10 9 7 13 13 C 1.53040 * 109.54044 * 301.41213 * 12 10 9 14 14 C 1.53193 * 109.31440 * 298.64220 * 13 12 10 15 15 N 1.46918 * 108.77784 * 54.63122 * 14 13 12 16 16 C 1.36934 * 120.63254 * 126.41497 * 15 14 13 17 17 H 1.08001 * 120.00011 * 221.18349 * 16 15 14 18 18 C 1.38813 * 119.99671 * 41.18336 * 16 15 14 19 19 N 1.31620 * 119.99847 * 214.88544 * 18 16 15 20 20 Si 1.86797 * 120.00410 * 34.88654 * 18 16 15 21 21 H 1.48504 * 109.46844 * 84.62453 * 20 18 16 22 22 H 1.48494 * 109.47356 * 204.62543 * 20 18 16 23 23 H 1.48500 * 109.46975 * 324.62845 * 20 18 16 24 24 C 1.46930 * 118.73988 * 306.39205 * 15 14 13 25 25 H 1.09000 * 109.70482 * 293.75697 * 24 15 14 26 26 C 1.52997 * 109.58878 * 173.39491 * 24 15 14 27 27 C 1.40278 * 118.80425 * 0.47384 * 6 4 3 28 28 O 1.35423 * 119.79780 * 179.79724 * 27 6 4 29 29 N 1.31891 * 119.40586 * 179.97438 * 2 1 3 30 30 H 1.08993 * 109.46702 * 270.02289 * 1 2 3 31 31 H 1.08993 * 109.46410 * 30.02787 * 1 2 3 32 32 H 1.09001 * 109.46632 * 150.02142 * 1 2 3 33 33 H 1.07998 * 120.27094 * 0.02562 * 3 2 1 34 34 H 1.09006 * 109.47068 * 90.00086 * 5 4 3 35 35 H 1.08994 * 109.47697 * 209.99570 * 5 4 3 36 36 H 1.09006 * 109.47357 * 330.00276 * 5 4 3 37 37 H 0.97001 * 119.99810 * 359.97438 * 9 7 6 38 38 H 1.08995 * 109.46276 * 61.43949 * 12 10 9 39 39 H 1.09006 * 109.45419 * 181.39645 * 12 10 9 40 40 H 1.09000 * 109.49779 * 178.68420 * 13 12 10 41 41 H 1.08999 * 109.52316 * 58.60324 * 13 12 10 42 42 H 1.09009 * 109.58053 * 294.84282 * 14 13 12 43 43 H 1.09000 * 109.58914 * 174.42244 * 14 13 12 44 44 H 0.96992 * 120.00356 * 179.97438 * 19 18 16 45 45 H 1.09000 * 109.47409 * 300.71045 * 26 24 15 46 46 H 1.09004 * 109.47394 * 60.71133 * 26 24 15 47 47 H 1.09001 * 109.47195 * 180.71588 * 26 24 15 48 48 H 0.96699 * 114.00403 * 269.72231 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2065 -0.0005 5 6 4.3409 2.5012 -0.0011 6 6 4.2356 -0.0250 0.0044 7 6 5.7098 -0.0815 0.0100 8 8 6.3213 -0.1031 -1.0407 9 7 6.3786 -0.1093 1.1798 10 6 7.8426 -0.1659 1.1853 11 1 8.2321 0.4092 0.3453 12 6 8.2978 -1.6219 1.0633 13 6 7.7237 -2.4367 2.2246 14 6 8.2517 -1.8743 3.5481 15 7 7.9444 -0.4388 3.6081 16 6 7.2725 0.0866 4.6793 17 1 6.5050 0.8304 4.5234 18 6 7.5778 -0.3367 5.9656 19 7 6.6269 -0.4302 6.8707 20 14 9.3383 -0.7735 6.4120 21 1 10.0743 0.4604 6.7878 22 1 9.3387 -1.7184 7.5575 23 1 10.0015 -1.4095 5.2454 24 6 8.3720 0.4223 2.4970 25 1 9.4606 0.4666 2.4644 26 6 7.8069 1.8305 2.6926 27 6 3.4758 -1.2042 -0.0004 28 8 4.0992 -2.4064 0.0001 29 7 2.1546 -1.1490 0.0005 30 1 -0.3632 0.0004 1.0276 31 1 -0.3632 0.8897 -0.5143 32 1 -0.3632 -0.8902 -0.5135 33 1 1.6412 2.1375 0.0004 34 1 4.5272 2.8136 1.0264 35 1 5.2913 2.3579 -0.5152 36 1 3.7620 3.2687 -0.5149 37 1 5.8907 -0.0918 2.0180 38 1 7.9431 -2.0354 0.1192 39 1 9.3866 -1.6656 1.0924 40 1 8.0290 -3.4783 2.1242 41 1 6.6356 -2.3737 2.2110 42 1 9.3307 -2.0195 3.6021 43 1 7.7698 -2.3863 4.3810 44 1 6.8401 -0.7263 7.7694 45 1 6.7185 1.7834 2.7299 46 1 8.1847 2.2473 3.6263 47 1 8.1147 2.4643 1.8610 48 1 4.2799 -2.7562 -0.8832 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993677303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:48:05 Heat of formation + Delta-G solvation = -25.369718 kcal Electronic energy + Delta-G solvation = -30551.019839 eV Core-core repulsion = 26606.610565 eV Total energy + Delta-G solvation = -3944.409275 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.97315 -39.46164 -37.66372 -37.37227 -34.27301 -33.94514 -32.58657 -31.93595 -31.68342 -30.15445 -28.35288 -27.64900 -26.36413 -24.89290 -23.60790 -22.45850 -21.74981 -20.91341 -20.34229 -18.88735 -18.46510 -17.72359 -17.23115 -16.55520 -15.80177 -15.50310 -15.09517 -14.79473 -14.54424 -14.30586 -14.12515 -13.80125 -13.54546 -13.42369 -13.34495 -13.12134 -13.05391 -12.83304 -12.54781 -12.50006 -12.23618 -12.08734 -11.95817 -11.77772 -11.68915 -11.35698 -11.23696 -10.78243 -10.69552 -10.55829 -10.26877 -10.09626 -9.94595 -9.68378 -9.63610 -9.49057 -9.34938 -8.86916 -8.62390 -8.38051 -6.76474 -6.13286 -3.44882 0.72438 1.02013 2.75200 3.24819 3.37790 3.41493 3.48706 3.53732 3.70351 4.36952 4.42257 4.53817 4.83555 4.88391 4.89300 5.07583 5.16740 5.19768 5.27119 5.38715 5.43233 5.46034 5.46343 5.50172 5.58328 5.68902 5.79737 5.82589 5.90144 5.99696 6.03879 6.11941 6.15083 6.31592 6.34373 6.36191 6.44410 6.53439 6.59002 6.77614 6.87806 6.92967 6.97598 7.10095 7.38205 7.78127 7.90558 7.98131 8.34130 8.47544 8.94187 9.66586 10.15274 11.01734 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013910 B = 0.004034 C = 0.003820 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.427755 B = 6939.649839 C = 7327.516946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.165 3.835 3 C -0.188 4.188 4 C 0.012 3.988 5 C -0.125 4.125 6 C -0.197 4.197 7 C 0.573 3.427 8 O -0.551 6.551 9 N -0.685 5.685 10 C 0.133 3.867 11 H 0.079 0.921 12 C -0.120 4.120 13 C -0.135 4.135 14 C 0.143 3.857 15 N -0.594 5.594 16 C -0.280 4.280 17 H 0.076 0.924 18 C 0.054 3.946 19 N -0.877 5.877 20 Si 0.844 3.156 21 H -0.289 1.289 22 H -0.298 1.298 23 H -0.260 1.260 24 C 0.155 3.845 25 H 0.042 0.958 26 C -0.133 4.133 27 C 0.356 3.644 28 O -0.471 6.471 29 N -0.507 5.507 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.143 0.857 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.055 0.945 39 H 0.062 0.938 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.066 0.934 44 H 0.264 0.736 45 H 0.055 0.945 46 H 0.066 0.934 47 H 0.039 0.961 48 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 3.158 -14.905 16.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.027 3.973 3 C -0.208 4.208 4 C 0.004 3.996 5 C -0.181 4.181 6 C -0.203 4.203 7 C 0.357 3.643 8 O -0.430 6.430 9 N -0.334 5.334 10 C 0.027 3.973 11 H 0.097 0.903 12 C -0.159 4.159 13 C -0.174 4.174 14 C 0.018 3.982 15 N -0.319 5.319 16 C -0.408 4.408 17 H 0.093 0.907 18 C -0.149 4.149 19 N -0.515 5.515 20 Si 0.671 3.329 21 H -0.216 1.216 22 H -0.225 1.225 23 H -0.185 1.185 24 C 0.049 3.951 25 H 0.059 0.941 26 C -0.191 4.191 27 C 0.176 3.824 28 O -0.279 6.279 29 N -0.227 5.227 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.161 0.839 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.249 0.751 38 H 0.073 0.927 39 H 0.081 0.919 40 H 0.068 0.932 41 H 0.083 0.917 42 H 0.042 0.958 43 H 0.084 0.916 44 H 0.073 0.927 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.058 0.942 48 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -7.419 2.361 -14.819 16.740 hybrid contribution 1.356 0.222 0.474 1.453 sum -6.063 2.583 -14.345 15.787 Atomic orbital electron populations 1.20785 0.88282 1.03632 1.03596 1.21137 0.96899 0.87119 0.92137 1.21748 0.93673 0.99542 1.05847 1.20259 0.93641 0.94260 0.91440 1.20949 1.00328 0.92975 1.03874 1.20944 0.95438 0.94000 1.09960 1.17730 0.85760 0.76314 0.84479 1.90765 1.69057 1.51501 1.31657 1.46014 1.07754 1.71377 1.08288 1.21558 0.79278 0.96677 0.99776 0.90307 1.21757 1.00079 0.95497 0.98536 1.21996 1.01348 0.97619 0.96426 1.21310 0.96888 0.84816 0.95218 1.44404 1.66514 1.01421 1.19562 1.18515 1.13518 1.25489 0.83238 0.90681 1.25571 0.96569 0.97043 0.95752 1.70072 1.31560 1.44892 1.05021 0.87366 0.89538 0.77791 0.78198 1.21601 1.22490 1.18469 1.20858 0.96123 0.91087 0.87051 0.94062 1.21748 1.01381 0.95145 1.00789 1.18986 0.86311 0.84488 0.92593 1.84742 1.76640 1.32624 1.33856 1.67023 1.09200 1.30399 1.16117 0.89833 0.90343 0.90254 0.83943 0.89375 0.90454 0.90347 0.75051 0.92658 0.91901 0.93153 0.91728 0.95826 0.91552 0.92678 0.92576 0.91535 0.94186 0.73860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.16 36.01 0.37 -0.48 16 2 C 0.16 1.95 6.78 -82.52 -0.56 1.39 16 3 C -0.19 -2.05 9.41 -39.50 -0.37 -2.42 16 4 C 0.01 0.15 5.95 -103.93 -0.62 -0.47 16 5 C -0.12 -1.33 9.68 36.00 0.35 -0.98 16 6 C -0.20 -2.97 5.66 -104.69 -0.59 -3.56 16 7 C 0.57 9.47 5.39 -12.48 -0.07 9.40 16 8 O -0.55 -10.28 16.77 5.28 0.09 -10.19 16 9 N -0.68 -11.48 3.46 -54.73 -0.19 -11.67 16 10 C 0.13 2.24 2.33 -67.81 -0.16 2.08 16 11 H 0.08 1.31 7.58 -51.93 -0.39 0.92 16 12 C -0.12 -1.99 5.58 -26.69 -0.15 -2.14 16 13 C -0.13 -2.42 5.93 -26.61 -0.16 -2.57 16 14 C 0.14 2.99 4.59 -3.71 -0.02 2.97 16 15 N -0.59 -12.89 2.12 -164.77 -0.35 -13.24 16 16 C -0.28 -7.09 8.43 -15.06 -0.13 -7.22 16 17 H 0.08 2.02 6.81 -52.49 -0.36 1.66 16 18 C 0.05 1.46 4.82 -17.43 -0.08 1.38 16 19 N -0.88 -25.35 13.97 55.49 0.78 -24.57 16 20 Si 0.84 20.74 27.40 -169.99 -4.66 16.08 16 21 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.30 -7.51 7.11 56.52 0.40 -7.10 16 23 H -0.26 -6.14 5.24 56.52 0.30 -5.84 16 24 C 0.16 2.86 3.20 -67.60 -0.22 2.65 16 25 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 26 C -0.13 -2.30 7.85 37.16 0.29 -2.00 16 27 C 0.36 5.45 7.77 -16.61 -0.13 5.32 16 28 O -0.47 -6.91 13.01 -17.96 -0.23 -7.14 16 29 N -0.51 -7.41 10.28 -9.21 -0.09 -7.50 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.08 0.43 8.07 -51.93 -0.42 0.02 16 32 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.08 0.94 7.20 -51.93 -0.37 0.56 16 36 H 0.08 0.63 8.10 -51.93 -0.42 0.21 16 37 H 0.41 7.57 7.76 -40.82 -0.32 7.26 16 38 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 1.25 7.53 -51.93 -0.39 0.86 16 42 H 0.02 0.50 6.71 -51.92 -0.35 0.15 16 43 H 0.07 1.52 7.02 -51.93 -0.36 1.16 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 45 H 0.06 0.99 6.36 -51.93 -0.33 0.66 16 46 H 0.07 1.25 7.71 -51.93 -0.40 0.85 16 47 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 48 H 0.40 4.10 9.06 45.56 0.41 4.51 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -31.73 381.40 -7.90 -39.64 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -6.75 Total: 9.51 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: -2.24 Total: 3.34 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: 0.14 Total: -56.98 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.15 Total: -17.33 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.66 Total: 16.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -31.73 -7.90 -39.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993677303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.267 kcal (2) G-P(sol) polarization free energy of solvation -31.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds